Wall clock time and date at job start Sun Mar 29 2020 22:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36879 * 126.39875 * 2 1 4 4 C 1.34666 * 106.82021 * 180.25541 * 3 2 1 5 5 N 1.34127 * 108.02009 * 359.74026 * 4 3 2 6 6 C 1.30505 * 109.25343 * 0.02562 * 5 4 3 7 7 C 1.50702 * 125.64524 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.49389 * 180.02562 * 7 6 5 9 9 C 1.53040 * 109.49580 * 59.96849 * 7 6 5 10 10 C 1.53043 * 109.53711 * 178.64920 * 9 7 6 11 11 C 1.53187 * 109.31278 * 61.36055 * 10 9 7 12 12 N 1.46918 * 108.77613 * 305.36368 * 11 10 9 13 13 C 1.36938 * 120.63373 * 233.58564 * 12 11 10 14 14 H 1.08004 * 119.99712 * 27.69303 * 13 12 11 15 15 C 1.38807 * 120.00472 * 207.68621 * 13 12 11 16 16 N 1.31618 * 119.99851 * 17.37207 * 15 13 12 17 17 Si 1.86797 * 120.00235 * 197.36766 * 15 13 12 18 18 H 1.48497 * 109.47170 * 90.00356 * 17 15 13 19 19 H 1.48506 * 109.47392 * 209.99993 * 17 15 13 20 20 H 1.48498 * 109.47322 * 330.00431 * 17 15 13 21 21 C 1.46925 * 118.74022 * 53.61161 * 12 11 10 22 22 H 1.09001 * 109.47384 * 270.18283 * 1 2 3 23 23 H 1.08999 * 109.47381 * 30.18974 * 1 2 3 24 24 H 1.09000 * 109.46979 * 150.18539 * 1 2 3 25 25 H 1.08006 * 126.59120 * 0.02562 * 3 2 1 26 26 H 1.07998 * 125.99384 * 179.72712 * 4 3 2 27 27 H 1.09008 * 109.45832 * 298.66637 * 9 7 6 28 28 H 1.08995 * 109.46529 * 58.62557 * 9 7 6 29 29 H 1.09001 * 109.49760 * 181.31475 * 10 9 7 30 30 H 1.09000 * 109.49721 * 301.37443 * 10 9 7 31 31 H 1.08996 * 109.58826 * 65.15527 * 11 10 9 32 32 H 1.09003 * 109.58336 * 185.57984 * 11 10 9 33 33 H 0.97004 * 120.00023 * 179.97438 * 16 15 13 34 34 H 1.08997 * 109.58918 * 186.60000 * 21 12 11 35 35 H 1.09003 * 109.58424 * 66.17526 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1017 0.0000 4 6 3.5460 0.6505 -0.0057 5 7 3.5096 -0.6903 -0.0034 6 6 2.2663 -1.0870 0.0031 7 6 1.8019 -2.5206 0.0070 8 1 0.7123 -2.5500 0.0118 9 6 2.3373 -3.2275 1.2543 10 6 1.8385 -4.6742 1.2765 11 6 2.3641 -5.4104 0.0403 12 7 1.9759 -4.6567 -1.1596 13 6 1.3001 -5.2700 -2.1806 14 1 0.6679 -6.1212 -1.9750 15 6 1.4275 -4.7977 -3.4796 16 7 2.4298 -4.0057 -3.7965 17 14 0.1764 -5.2860 -4.7779 18 1 -0.9330 -4.2990 -4.7923 19 1 0.8311 -5.3142 -6.1105 20 1 -0.3637 -6.6330 -4.4631 21 6 2.3270 -3.2325 -1.2436 22 1 -0.3634 0.0033 1.0277 23 1 -0.3634 0.8883 -0.5168 24 1 -0.3633 -0.8916 -0.5110 25 1 1.9613 2.1346 0.0004 26 1 4.4368 1.2611 -0.0115 27 1 3.4272 -3.2195 1.2365 28 1 1.9851 -2.7082 2.1455 29 1 2.2010 -5.1702 2.1769 30 1 0.7485 -4.6833 1.2700 31 1 3.4505 -5.4814 0.0917 32 1 1.9321 -6.4103 -0.0006 33 1 2.5191 -3.6759 -4.7044 34 1 1.8706 -2.7954 -2.1317 35 1 3.4105 -3.1258 -1.2969 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365618150.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:39 Heat of formation + Delta-G solvation = 77.465652 kcal Electronic energy + Delta-G solvation = -17127.666463 eV Core-core repulsion = 14548.145986 eV Total energy + Delta-G solvation = -2579.520476 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.67822 -37.39711 -33.65116 -33.21690 -31.40504 -29.86402 -27.86751 -26.65674 -25.20398 -22.69041 -22.01548 -21.00493 -19.60757 -18.50022 -16.91513 -16.43874 -15.35179 -14.87363 -14.32861 -14.04380 -13.59831 -13.24851 -13.06321 -12.86538 -12.77201 -12.49377 -12.27911 -12.22343 -11.53146 -10.99339 -10.74758 -10.47915 -10.25823 -10.18619 -9.88805 -9.69988 -9.49007 -9.40067 -9.19640 -8.44573 -7.92272 -6.63676 -5.75228 -3.18581 2.43518 3.13815 3.37371 3.44477 3.46410 3.63343 4.50467 4.88977 4.95562 5.10345 5.22523 5.38055 5.46637 5.55176 5.65953 5.71012 5.76766 5.92870 6.00608 6.18340 6.31828 6.42833 6.55718 6.64788 6.70436 6.86627 6.88119 7.08841 7.16202 7.41478 7.58588 7.76762 7.82259 8.47118 8.61674 9.23270 9.87267 10.44854 11.32356 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023717 B = 0.008781 C = 0.007486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.294520 B = 3187.948341 C = 3739.523289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.464 5.464 3 C -0.080 4.080 4 C -0.030 4.030 5 N -0.487 5.487 6 C 0.240 3.760 7 C -0.031 4.031 8 H 0.072 0.928 9 C -0.093 4.093 10 C -0.133 4.133 11 C 0.143 3.857 12 N -0.592 5.592 13 C -0.255 4.255 14 H 0.067 0.933 15 C 0.002 3.998 16 N -0.897 5.897 17 Si 0.900 3.100 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.278 1.278 21 C 0.189 3.811 22 H 0.072 0.928 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.167 0.833 26 H 0.164 0.836 27 H 0.067 0.933 28 H 0.041 0.959 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.020 0.980 32 H 0.053 0.947 33 H 0.254 0.746 34 H 0.084 0.916 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.109 7.806 8.932 12.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.147 5.147 3 C -0.212 4.212 4 C -0.178 4.178 5 N -0.205 5.205 6 C -0.024 4.024 7 C -0.053 4.053 8 H 0.090 0.910 9 C -0.132 4.132 10 C -0.173 4.173 11 C 0.016 3.984 12 N -0.314 5.314 13 C -0.385 4.385 14 H 0.085 0.915 15 C -0.197 4.197 16 N -0.541 5.541 17 Si 0.730 3.270 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.204 1.204 21 C 0.062 3.938 22 H 0.090 0.910 23 H 0.100 0.900 24 H 0.109 0.891 25 H 0.184 0.816 26 H 0.181 0.819 27 H 0.086 0.914 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.536 7.352 8.739 11.955 hybrid contribution -1.374 0.684 -0.779 1.721 sum -4.910 8.036 7.960 12.331 Atomic orbital electron populations 1.21995 0.77320 1.04721 1.03057 1.45360 1.07323 1.06778 1.55209 1.22510 0.91637 0.92205 1.14823 1.22248 0.96035 0.91678 1.07880 1.70270 1.18719 1.11223 1.20301 1.23615 0.85445 0.90886 1.02415 1.20531 0.99555 0.84523 1.00706 0.91016 1.21343 1.01287 0.95306 0.95263 1.22029 1.00548 0.95686 0.99006 1.20947 0.96507 0.94348 0.86560 1.44058 1.66047 1.04651 1.16665 1.19196 1.19695 1.13707 0.85859 0.91533 1.25073 0.97178 1.00433 0.96995 1.70058 1.28244 1.37175 1.18648 0.86319 0.81088 0.78273 0.81285 1.21584 1.21747 1.20362 1.20715 0.97787 0.82915 0.92389 0.90979 0.90044 0.89076 0.81607 0.81912 0.91405 0.93990 0.92821 0.92541 0.96168 0.92815 0.93597 0.89751 0.94802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.85 10.83 59.85 0.65 1.50 16 2 N -0.46 -7.48 3.15 -121.28 -0.38 -7.86 16 3 C -0.08 -1.18 11.58 -16.56 -0.19 -1.37 16 4 C -0.03 -0.51 11.87 -17.81 -0.21 -0.72 16 5 N -0.49 -10.04 11.25 -10.82 -0.12 -10.16 16 6 C 0.24 4.67 6.42 -155.41 -1.00 3.67 16 7 C -0.03 -0.62 2.66 -91.65 -0.24 -0.86 16 8 H 0.07 1.38 6.73 -51.93 -0.35 1.03 16 9 C -0.09 -1.71 5.15 -26.69 -0.14 -1.85 16 10 C -0.13 -2.37 6.08 -26.61 -0.16 -2.53 16 11 C 0.14 3.06 6.52 -3.72 -0.02 3.03 16 12 N -0.59 -15.11 2.99 -172.33 -0.52 -15.63 16 13 C -0.25 -7.03 9.58 -15.06 -0.14 -7.17 16 14 H 0.07 1.79 7.89 -52.48 -0.41 1.37 16 15 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 16 N -0.90 -26.68 11.19 55.49 0.62 -26.06 16 17 Si 0.90 21.72 29.59 -169.99 -5.03 16.69 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C 0.19 4.71 4.58 -3.71 -0.02 4.69 16 22 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.09 1.14 7.05 -51.93 -0.37 0.78 16 25 H 0.17 1.78 8.06 -52.48 -0.42 1.36 16 26 H 0.16 2.25 8.06 -52.49 -0.42 1.83 16 27 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 33 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.08 2.36 6.04 -51.93 -0.31 2.05 16 35 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 284.86 15.07 4.29 4.29 Total: -1.00 -32.40 284.86 -7.92 -40.32 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -5.22 Total: 0.02 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -1.57 Total: -1.63 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: -0.40 Total: -59.70 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.40 -7.92 -40.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365618150.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.786 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds