Wall clock time and date at job start Sun Mar 29 2020 22:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36879 * 126.39875 * 2 1 4 4 C 1.34666 * 106.82021 * 180.25541 * 3 2 1 5 5 N 1.34127 * 108.02009 * 359.74026 * 4 3 2 6 6 C 1.30505 * 109.25343 * 0.02562 * 5 4 3 7 7 C 1.50702 * 125.64524 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.49389 * 180.02562 * 7 6 5 9 9 C 1.53040 * 109.49580 * 59.96849 * 7 6 5 10 10 C 1.53043 * 109.53711 * 178.64920 * 9 7 6 11 11 C 1.53187 * 109.31278 * 61.36055 * 10 9 7 12 12 N 1.46918 * 108.77613 * 305.36368 * 11 10 9 13 13 C 1.36938 * 120.63373 * 233.58564 * 12 11 10 14 14 H 1.08004 * 119.99712 * 27.69303 * 13 12 11 15 15 C 1.38807 * 120.00472 * 207.68621 * 13 12 11 16 16 N 1.31618 * 119.99851 * 17.37207 * 15 13 12 17 17 Si 1.86797 * 120.00235 * 197.36766 * 15 13 12 18 18 H 1.48497 * 109.47170 * 90.00356 * 17 15 13 19 19 H 1.48506 * 109.47392 * 209.99993 * 17 15 13 20 20 H 1.48498 * 109.47322 * 330.00431 * 17 15 13 21 21 C 1.46925 * 118.74022 * 53.61161 * 12 11 10 22 22 H 1.09001 * 109.47384 * 270.18283 * 1 2 3 23 23 H 1.08999 * 109.47381 * 30.18974 * 1 2 3 24 24 H 1.09000 * 109.46979 * 150.18539 * 1 2 3 25 25 H 1.08006 * 126.59120 * 0.02562 * 3 2 1 26 26 H 1.07998 * 125.99384 * 179.72712 * 4 3 2 27 27 H 1.09008 * 109.45832 * 298.66637 * 9 7 6 28 28 H 1.08995 * 109.46529 * 58.62557 * 9 7 6 29 29 H 1.09001 * 109.49760 * 181.31475 * 10 9 7 30 30 H 1.09000 * 109.49721 * 301.37443 * 10 9 7 31 31 H 1.08996 * 109.58826 * 65.15527 * 11 10 9 32 32 H 1.09003 * 109.58336 * 185.57984 * 11 10 9 33 33 H 0.97004 * 120.00023 * 179.97438 * 16 15 13 34 34 H 1.08997 * 109.58918 * 186.60000 * 21 12 11 35 35 H 1.09003 * 109.58424 * 66.17526 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1017 0.0000 4 6 3.5460 0.6505 -0.0057 5 7 3.5096 -0.6903 -0.0034 6 6 2.2663 -1.0870 0.0031 7 6 1.8019 -2.5206 0.0070 8 1 0.7123 -2.5500 0.0118 9 6 2.3373 -3.2275 1.2543 10 6 1.8385 -4.6742 1.2765 11 6 2.3641 -5.4104 0.0403 12 7 1.9759 -4.6567 -1.1596 13 6 1.3001 -5.2700 -2.1806 14 1 0.6679 -6.1212 -1.9750 15 6 1.4275 -4.7977 -3.4796 16 7 2.4298 -4.0057 -3.7965 17 14 0.1764 -5.2860 -4.7779 18 1 -0.9330 -4.2990 -4.7923 19 1 0.8311 -5.3142 -6.1105 20 1 -0.3637 -6.6330 -4.4631 21 6 2.3270 -3.2325 -1.2436 22 1 -0.3634 0.0033 1.0277 23 1 -0.3634 0.8883 -0.5168 24 1 -0.3633 -0.8916 -0.5110 25 1 1.9613 2.1346 0.0004 26 1 4.4368 1.2611 -0.0115 27 1 3.4272 -3.2195 1.2365 28 1 1.9851 -2.7082 2.1455 29 1 2.2010 -5.1702 2.1769 30 1 0.7485 -4.6833 1.2700 31 1 3.4505 -5.4814 0.0917 32 1 1.9321 -6.4103 -0.0006 33 1 2.5191 -3.6759 -4.7044 34 1 1.8706 -2.7954 -2.1317 35 1 3.4105 -3.1258 -1.2969 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365618150.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:39 Heat of formation + Delta-G solvation = 57.338097 kcal Electronic energy + Delta-G solvation = -17128.539259 eV Core-core repulsion = 14548.145986 eV Total energy + Delta-G solvation = -2580.393273 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.97207 -39.13476 -35.12877 -34.85169 -33.09552 -31.73014 -29.27398 -27.75089 -27.20647 -24.29490 -23.84991 -22.29711 -21.13062 -20.04847 -18.71451 -17.88566 -16.88523 -16.50873 -15.84420 -15.61913 -15.23398 -14.83070 -14.63323 -14.27995 -14.16677 -14.03143 -13.63197 -13.48578 -13.18664 -12.91265 -12.61919 -12.33503 -12.02733 -11.95494 -11.61679 -11.41249 -11.22515 -10.79412 -10.56900 -10.46682 -9.23299 -8.69269 -7.86844 -5.34602 1.17544 1.46194 1.46610 1.57029 1.99326 2.27341 2.50949 3.26208 3.48073 3.79678 3.93067 3.99307 4.17428 4.18628 4.36474 4.40787 4.44695 4.61956 4.64889 4.72333 4.82785 4.84527 5.02714 5.11790 5.21406 5.27297 5.34577 5.46897 5.53511 5.64857 5.73051 5.96598 6.31773 6.37650 7.12089 7.30148 7.83818 8.37536 9.18829 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023717 B = 0.008781 C = 0.007486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.294520 B = 3187.948341 C = 3739.523289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.462 5.462 3 C -0.052 4.052 4 C -0.064 4.064 5 N -0.530 5.530 6 C 0.204 3.796 7 C -0.016 4.016 8 H 0.081 0.919 9 C -0.087 4.087 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.610 5.610 13 C -0.263 4.263 14 H 0.075 0.925 15 C -0.054 4.054 16 N -0.937 5.937 17 Si 0.969 3.031 18 H -0.283 1.283 19 H -0.299 1.299 20 H -0.264 1.264 21 C 0.208 3.792 22 H 0.098 0.902 23 H 0.111 0.889 24 H 0.077 0.923 25 H 0.215 0.785 26 H 0.184 0.816 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.007 0.993 32 H 0.061 0.939 33 H 0.248 0.752 34 H 0.047 0.953 35 H -0.012 1.012 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.257 8.761 10.379 14.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.144 5.144 3 C -0.186 4.186 4 C -0.212 4.212 5 N -0.249 5.249 6 C -0.059 4.059 7 C -0.038 4.038 8 H 0.100 0.900 9 C -0.125 4.125 10 C -0.158 4.158 11 C 0.010 3.990 12 N -0.333 5.333 13 C -0.393 4.393 14 H 0.092 0.908 15 C -0.250 4.250 16 N -0.583 5.583 17 Si 0.797 3.203 18 H -0.209 1.209 19 H -0.225 1.225 20 H -0.188 1.188 21 C 0.081 3.919 22 H 0.116 0.884 23 H 0.130 0.870 24 H 0.096 0.904 25 H 0.231 0.769 26 H 0.201 0.799 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.025 0.975 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.006 0.994 Dipole moment (debyes) X Y Z Total from point charges -5.715 8.288 10.226 14.350 hybrid contribution -0.648 0.434 -1.208 1.438 sum -6.363 8.722 9.018 14.067 Atomic orbital electron populations 1.22321 0.74727 1.05605 1.05072 1.45608 1.08969 1.06118 1.53726 1.23228 0.90628 0.93637 1.11065 1.22771 0.98244 0.90703 1.09455 1.70159 1.20086 1.13599 1.21061 1.23289 0.86000 0.91328 1.05276 1.20168 0.99733 0.85200 0.98720 0.90030 1.21290 0.99967 0.95868 0.95403 1.21905 1.00961 0.94858 0.98126 1.21152 0.95982 0.95036 0.86836 1.44359 1.66154 1.05301 1.17532 1.19596 1.19433 1.13656 0.86579 0.90785 1.25903 0.98940 1.00909 0.99204 1.70258 1.30409 1.39028 1.18624 0.85236 0.78532 0.78600 0.77941 1.20917 1.22544 1.18788 1.20260 0.94688 0.83382 0.93579 0.88364 0.87044 0.90377 0.76880 0.79889 0.93480 0.91249 0.89399 0.91553 0.97472 0.92058 0.94317 0.93500 0.99371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.31 10.83 127.77 1.38 2.69 16 2 N -0.46 -13.95 3.15 -537.60 -1.69 -15.65 16 3 C -0.05 -1.40 11.58 83.09 0.96 -0.44 16 4 C -0.06 -2.11 11.87 83.52 0.99 -1.12 16 5 N -0.53 -22.22 11.25 -188.13 -2.12 -24.33 16 6 C 0.20 7.96 6.42 138.13 0.89 8.84 16 7 C -0.02 -0.66 2.66 -11.46 -0.03 -0.69 16 8 H 0.08 3.09 6.73 -2.39 -0.02 3.07 16 9 C -0.09 -3.10 5.15 30.62 0.16 -2.94 16 10 C -0.12 -4.01 6.08 30.67 0.19 -3.82 16 11 C 0.14 5.79 6.52 86.36 0.56 6.35 16 12 N -0.61 -31.90 2.99 -699.15 -2.09 -34.00 16 13 C -0.26 -14.67 9.58 84.03 0.81 -13.87 16 14 H 0.07 3.95 7.89 -2.91 -0.02 3.92 16 15 C -0.05 -3.11 4.91 84.86 0.42 -2.70 16 16 N -0.94 -58.17 11.19 21.65 0.24 -57.92 16 17 Si 0.97 45.28 29.59 68.60 2.03 47.31 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 20 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 21 C 0.21 10.86 4.58 86.36 0.40 11.25 16 22 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.08 1.82 7.05 -2.39 -0.02 1.81 16 25 H 0.21 3.49 8.06 -2.91 -0.02 3.47 16 26 H 0.18 4.89 8.06 -2.91 -0.02 4.87 16 27 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.06 2.49 7.93 -2.39 -0.02 2.47 16 33 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 34 H 0.05 2.77 6.04 -2.39 -0.01 2.75 16 35 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 Total: -1.00 -73.99 284.86 4.14 -69.85 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 1.06 Total: 11.17 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 6.72 Total: 3.56 kcal Atomic # 7 Polarization: -126.24 SS G_CDS: -5.66 Total: -131.90 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -73.99 4.14 -69.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365618150.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.187 kcal (2) G-P(sol) polarization free energy of solvation -73.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds