Wall clock time and date at job start Sun Mar 29 2020 21:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30837 * 125.90084 * 2 1 4 4 N 1.40083 * 108.20468 * 180.25705 * 3 2 1 5 5 C 1.46498 * 126.03738 * 179.69615 * 4 3 2 6 6 C 1.34945 * 107.92525 * 359.72098 * 4 3 2 7 7 C 1.35313 * 107.74760 * 359.97438 * 6 4 3 8 8 C 1.50698 * 126.04151 * 180.02562 * 7 6 4 9 9 H 1.09000 * 109.87292 * 144.58152 * 8 7 6 10 10 C 1.54321 * 109.88669 * 265.76306 * 8 7 6 11 11 C 1.55153 * 102.94671 * 141.60712 * 10 8 7 12 12 C 1.55131 * 101.48647 * 324.33222 * 11 10 8 13 13 N 1.47026 * 109.88249 * 23.56876 * 8 7 6 14 14 C 1.36945 * 125.64697 * 61.60536 * 13 8 7 15 15 H 1.07997 * 119.99756 * 0.02562 * 14 13 8 16 16 C 1.38805 * 119.99878 * 179.97438 * 14 13 8 17 17 N 1.31624 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47174 * 270.00277 * 18 16 14 20 20 H 1.48501 * 109.47062 * 30.00228 * 18 16 14 21 21 H 1.48499 * 109.46981 * 150.00382 * 18 16 14 22 22 H 1.09004 * 109.46887 * 270.21545 * 1 2 3 23 23 H 1.08997 * 109.47093 * 30.21224 * 1 2 3 24 24 H 1.08998 * 109.47362 * 150.21520 * 1 2 3 25 25 H 1.09003 * 109.47226 * 270.03088 * 5 4 3 26 26 H 1.09006 * 109.46973 * 30.02642 * 5 4 3 27 27 H 1.08996 * 109.47594 * 150.02644 * 5 4 3 28 28 H 1.08006 * 126.12762 * 180.02562 * 6 4 3 29 29 H 1.09000 * 110.72011 * 259.97410 * 10 8 7 30 30 H 1.09003 * 110.71917 * 23.06399 * 10 8 7 31 31 H 1.08999 * 111.00098 * 82.57596 * 11 10 8 32 32 H 1.08999 * 111.00620 * 206.38773 * 11 10 8 33 33 H 1.08994 * 110.50226 * 278.45550 * 12 11 10 34 34 H 1.09001 * 110.34274 * 156.05220 * 12 11 10 35 35 H 0.97001 * 119.99885 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0060 5 6 4.7899 1.5006 -0.0143 6 6 3.6142 -0.7154 -0.0033 7 6 2.3272 -1.1330 0.0047 8 6 1.8599 -2.5657 0.0107 9 1 0.9540 -2.6575 0.6100 10 6 1.5873 -3.0351 -1.4339 11 6 2.1008 -4.4991 -1.4264 12 6 3.3257 -4.3921 -0.4804 13 7 2.9126 -3.4327 0.5600 14 6 3.4284 -3.3576 1.8264 15 1 3.0599 -2.6128 2.5162 16 6 4.4239 -4.2395 2.2237 17 7 4.8726 -5.1476 1.3832 18 14 5.1279 -4.1367 3.9510 19 1 6.2896 -3.2117 3.9577 20 1 4.0865 -3.6302 4.8806 21 1 5.5673 -5.4863 4.3876 22 1 -0.3633 0.0039 1.0277 23 1 -0.3633 0.8880 -0.5171 24 1 -0.3634 -0.8919 -0.5105 25 1 5.0772 1.7135 -1.0440 26 1 4.5592 2.4342 0.4990 27 1 5.6122 0.9991 0.4960 28 1 4.4891 -1.3487 -0.0061 29 1 0.5206 -3.0016 -1.6555 30 1 2.1471 -2.4308 -2.1478 31 1 1.3479 -5.1752 -1.0214 32 1 2.4062 -4.8112 -2.4252 33 1 4.1937 -4.0151 -1.0210 34 1 3.5467 -5.3623 -0.0355 35 1 5.5686 -5.7636 1.6608 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366093667.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:02 Heat of formation + Delta-G solvation = 101.139683 kcal Electronic energy + Delta-G solvation = -17143.280648 eV Core-core repulsion = 14564.786755 eV Total energy + Delta-G solvation = -2578.493893 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.63642 -37.17972 -33.51145 -32.43137 -30.31830 -29.21271 -28.97565 -26.82253 -24.78375 -24.14416 -20.93346 -20.07160 -19.33562 -18.68956 -16.78293 -16.04158 -15.00611 -14.93314 -14.17410 -13.80890 -13.53958 -13.23458 -12.92628 -12.57645 -12.13396 -11.90658 -11.81702 -11.68375 -11.54901 -11.29313 -10.96154 -10.79921 -10.67656 -10.11643 -9.99903 -9.74788 -9.62491 -9.41177 -8.65028 -8.56792 -7.58835 -6.77328 -5.60754 -3.01977 2.52202 3.06018 3.39822 3.44572 3.46579 3.48388 4.51923 4.92407 5.38402 5.41690 5.44656 5.51162 5.59263 5.65364 5.74954 5.82453 5.90511 5.94827 6.03647 6.15877 6.39428 6.40266 6.50127 6.63797 6.70397 6.85073 6.86154 7.20762 7.36117 7.59784 7.69090 7.73613 7.92497 8.33919 8.42919 9.28757 9.89601 10.55422 11.42395 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.020386 B = 0.010197 C = 0.008061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.147252 B = 2745.136127 C = 3472.873572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.068 3.932 3 N -0.319 5.319 4 N -0.391 5.391 5 C 0.109 3.891 6 C 0.087 3.913 7 C -0.228 4.228 8 C 0.232 3.768 9 H 0.040 0.960 10 C -0.118 4.118 11 C -0.148 4.148 12 C 0.152 3.848 13 N -0.594 5.594 14 C -0.208 4.208 15 H 0.074 0.926 16 C -0.013 4.013 17 N -0.923 5.923 18 Si 0.908 3.092 19 H -0.292 1.292 20 H -0.282 1.282 21 H -0.291 1.291 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.174 0.826 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.008 0.992 34 H 0.106 0.894 35 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.778 7.563 -5.034 9.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.098 4.098 3 N -0.143 5.143 4 N -0.174 5.174 5 C -0.033 4.033 6 C -0.057 4.057 7 C -0.240 4.240 8 C 0.123 3.877 9 H 0.058 0.942 10 C -0.157 4.157 11 C -0.186 4.186 12 C 0.027 3.973 13 N -0.318 5.318 14 C -0.337 4.337 15 H 0.092 0.908 16 C -0.208 4.208 17 N -0.572 5.572 18 Si 0.739 3.261 19 H -0.219 1.219 20 H -0.208 1.208 21 H -0.217 1.217 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.192 0.808 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.026 0.974 34 H 0.124 0.876 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.425 8.793 -4.879 10.623 hybrid contribution 0.723 -0.659 0.950 1.364 sum -2.701 8.134 -3.929 9.428 Atomic orbital electron populations 1.20084 0.87493 1.02496 1.02420 1.22170 0.96420 0.90894 1.00359 1.77072 0.86766 1.23044 1.27382 1.48265 1.04915 1.05121 1.59113 1.21673 0.84412 0.94755 1.02439 1.22381 1.00318 0.83168 0.99866 1.20914 0.91769 0.97353 1.14007 1.19216 0.91779 0.84461 0.92203 0.94232 1.22544 0.99429 0.96964 0.96721 1.23039 1.00589 0.95357 0.99640 1.21975 0.90546 0.97302 0.87471 1.44594 1.41922 1.34966 1.10291 1.19031 1.14403 1.12833 0.87409 0.90775 1.24733 0.99502 0.98604 0.97985 1.69811 1.31871 1.21922 1.33596 0.86158 0.78902 0.76759 0.84250 1.21941 1.20802 1.21741 0.91080 0.91734 0.90634 0.91626 0.90115 0.89828 0.80849 0.92539 0.92295 0.92299 0.92737 0.97383 0.87638 0.93906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.24 36.01 0.37 -0.58 16 2 C 0.07 1.28 7.22 -82.40 -0.59 0.68 16 3 N -0.32 -6.16 12.58 33.67 0.42 -5.73 16 4 N -0.39 -7.15 4.01 -68.16 -0.27 -7.42 16 5 C 0.11 1.42 11.47 59.85 0.69 2.11 16 6 C 0.09 1.77 10.45 -17.23 -0.18 1.59 16 7 C -0.23 -4.65 4.87 -105.05 -0.51 -5.16 16 8 C 0.23 4.89 3.22 -68.11 -0.22 4.67 16 9 H 0.04 0.85 8.12 -51.93 -0.42 0.43 16 10 C -0.12 -2.15 6.46 -24.90 -0.16 -2.31 16 11 C -0.15 -2.83 7.10 -24.46 -0.17 -3.00 16 12 C 0.15 3.63 5.91 -2.41 -0.01 3.61 16 13 N -0.59 -14.72 2.71 -163.74 -0.44 -15.16 16 14 C -0.21 -5.65 9.52 -15.06 -0.14 -5.79 16 15 H 0.07 2.04 7.83 -52.49 -0.41 1.63 16 16 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 17 N -0.92 -26.33 10.08 55.49 0.56 -25.77 16 18 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.07 0.99 7.96 -51.93 -0.41 0.58 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.17 3.72 7.99 -52.48 -0.42 3.30 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 1.07 7.84 -51.93 -0.41 0.66 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.11 2.84 5.85 -51.93 -0.30 2.54 16 35 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 289.39 15.07 4.36 4.36 Total: -1.00 -30.85 289.39 -6.75 -37.60 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -5.32 Total: -0.24 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -1.04 Total: -4.65 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.27 Total: -54.08 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.85 -6.75 -37.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366093667.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.739 kcal (2) G-P(sol) polarization free energy of solvation -30.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds