Wall clock time and date at job start Sun Mar 29 2020 21:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30837 * 125.90084 * 2 1 4 4 N 1.40083 * 108.20468 * 180.25705 * 3 2 1 5 5 C 1.46498 * 126.03738 * 179.69615 * 4 3 2 6 6 C 1.34945 * 107.92525 * 359.72098 * 4 3 2 7 7 C 1.35313 * 107.74760 * 359.97438 * 6 4 3 8 8 C 1.50698 * 126.04151 * 180.02562 * 7 6 4 9 9 H 1.09000 * 109.87292 * 144.58152 * 8 7 6 10 10 C 1.54321 * 109.88669 * 265.76306 * 8 7 6 11 11 C 1.55153 * 102.94671 * 141.60712 * 10 8 7 12 12 C 1.55131 * 101.48647 * 324.33222 * 11 10 8 13 13 N 1.47026 * 109.88249 * 23.56876 * 8 7 6 14 14 C 1.36945 * 125.64697 * 61.60536 * 13 8 7 15 15 H 1.07997 * 119.99756 * 0.02562 * 14 13 8 16 16 C 1.38805 * 119.99878 * 179.97438 * 14 13 8 17 17 N 1.31624 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47174 * 270.00277 * 18 16 14 20 20 H 1.48501 * 109.47062 * 30.00228 * 18 16 14 21 21 H 1.48499 * 109.46981 * 150.00382 * 18 16 14 22 22 H 1.09004 * 109.46887 * 270.21545 * 1 2 3 23 23 H 1.08997 * 109.47093 * 30.21224 * 1 2 3 24 24 H 1.08998 * 109.47362 * 150.21520 * 1 2 3 25 25 H 1.09003 * 109.47226 * 270.03088 * 5 4 3 26 26 H 1.09006 * 109.46973 * 30.02642 * 5 4 3 27 27 H 1.08996 * 109.47594 * 150.02644 * 5 4 3 28 28 H 1.08006 * 126.12762 * 180.02562 * 6 4 3 29 29 H 1.09000 * 110.72011 * 259.97410 * 10 8 7 30 30 H 1.09003 * 110.71917 * 23.06399 * 10 8 7 31 31 H 1.08999 * 111.00098 * 82.57596 * 11 10 8 32 32 H 1.08999 * 111.00620 * 206.38773 * 11 10 8 33 33 H 1.08994 * 110.50226 * 278.45550 * 12 11 10 34 34 H 1.09001 * 110.34274 * 156.05220 * 12 11 10 35 35 H 0.97001 * 119.99885 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0060 5 6 4.7899 1.5006 -0.0143 6 6 3.6142 -0.7154 -0.0033 7 6 2.3272 -1.1330 0.0047 8 6 1.8599 -2.5657 0.0107 9 1 0.9540 -2.6575 0.6100 10 6 1.5873 -3.0351 -1.4339 11 6 2.1008 -4.4991 -1.4264 12 6 3.3257 -4.3921 -0.4804 13 7 2.9126 -3.4327 0.5600 14 6 3.4284 -3.3576 1.8264 15 1 3.0599 -2.6128 2.5162 16 6 4.4239 -4.2395 2.2237 17 7 4.8726 -5.1476 1.3832 18 14 5.1279 -4.1367 3.9510 19 1 6.2896 -3.2117 3.9577 20 1 4.0865 -3.6302 4.8806 21 1 5.5673 -5.4863 4.3876 22 1 -0.3633 0.0039 1.0277 23 1 -0.3633 0.8880 -0.5171 24 1 -0.3634 -0.8919 -0.5105 25 1 5.0772 1.7135 -1.0440 26 1 4.5592 2.4342 0.4990 27 1 5.6122 0.9991 0.4960 28 1 4.4891 -1.3487 -0.0061 29 1 0.5206 -3.0016 -1.6555 30 1 2.1471 -2.4308 -2.1478 31 1 1.3479 -5.1752 -1.0214 32 1 2.4062 -4.8112 -2.4252 33 1 4.1937 -4.0151 -1.0210 34 1 3.5467 -5.3623 -0.0355 35 1 5.5686 -5.7636 1.6608 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366093667.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:02 Heat of formation + Delta-G solvation = 82.978757 kcal Electronic energy + Delta-G solvation = -17144.068165 eV Core-core repulsion = 14564.786755 eV Total energy + Delta-G solvation = -2579.281410 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.09871 -38.89877 -34.92973 -34.31109 -31.89622 -30.84163 -30.40823 -28.36842 -26.52729 -25.68808 -22.55294 -21.75300 -20.90012 -20.21374 -18.68960 -17.52323 -16.86700 -16.32787 -15.86619 -15.63204 -14.95135 -14.46513 -14.21972 -13.98860 -13.65384 -13.61097 -13.37042 -13.04037 -12.93627 -12.85311 -12.79213 -12.69177 -12.20665 -12.00319 -11.75926 -11.38220 -11.31281 -11.21331 -10.68516 -10.00956 -9.13527 -8.72518 -7.69715 -5.12099 1.04489 1.45048 1.46491 1.54999 1.76757 1.94837 2.52369 3.38799 3.66477 3.82922 4.12546 4.21257 4.30334 4.32138 4.39110 4.40863 4.56886 4.61992 4.75487 4.82733 4.88704 5.03045 5.10345 5.17517 5.18490 5.31708 5.32703 5.57652 5.68292 5.76342 5.91013 5.95192 6.25086 6.40859 6.88504 7.20559 7.89472 8.53544 9.31311 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.020386 B = 0.010197 C = 0.008061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.147252 B = 2745.136127 C = 3472.873572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.065 3.935 3 N -0.331 5.331 4 N -0.391 5.391 5 C 0.099 3.901 6 C 0.072 3.928 7 C -0.244 4.244 8 C 0.228 3.772 9 H 0.038 0.962 10 C -0.106 4.106 11 C -0.134 4.134 12 C 0.153 3.847 13 N -0.609 5.609 14 C -0.209 4.209 15 H 0.066 0.934 16 C -0.064 4.064 17 N -0.946 5.946 18 Si 0.965 3.035 19 H -0.290 1.290 20 H -0.277 1.277 21 H -0.294 1.294 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.154 0.846 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.078 0.922 33 H -0.016 1.016 34 H 0.072 0.928 35 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.061 8.734 -5.498 11.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.102 4.102 3 N -0.155 5.155 4 N -0.173 5.173 5 C -0.041 4.041 6 C -0.073 4.073 7 C -0.257 4.257 8 C 0.120 3.880 9 H 0.056 0.944 10 C -0.144 4.144 11 C -0.173 4.173 12 C 0.028 3.972 13 N -0.332 5.332 14 C -0.338 4.338 15 H 0.084 0.916 16 C -0.256 4.256 17 N -0.597 5.597 18 Si 0.795 3.205 19 H -0.218 1.218 20 H -0.202 1.202 21 H -0.221 1.221 22 H 0.097 0.903 23 H 0.101 0.899 24 H 0.108 0.892 25 H 0.105 0.895 26 H 0.115 0.885 27 H 0.111 0.889 28 H 0.172 0.828 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.002 0.998 34 H 0.090 0.910 35 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.721 10.003 -5.354 12.289 hybrid contribution 1.141 -0.962 1.082 1.843 sum -3.580 9.042 -4.272 10.622 Atomic orbital electron populations 1.20236 0.84599 1.04118 1.03427 1.22718 0.98267 0.89781 0.99408 1.77036 0.87237 1.23503 1.27705 1.48612 1.05826 1.04804 1.58108 1.22044 0.83094 0.94722 1.04264 1.22168 0.99838 0.84284 1.01038 1.20915 0.92266 0.97504 1.15031 1.19380 0.90399 0.84455 0.93760 0.94391 1.22499 1.01592 0.95616 0.94655 1.22910 0.98292 0.96509 0.99553 1.21771 0.92147 0.95290 0.87956 1.44782 1.42522 1.36078 1.09835 1.19142 1.14150 1.12070 0.88448 0.91597 1.25395 1.00315 0.98812 1.01117 1.70043 1.32247 1.22569 1.34864 0.85261 0.78180 0.76323 0.80717 1.21778 1.20206 1.22068 0.90274 0.89947 0.89202 0.89525 0.88544 0.88853 0.82843 0.88964 0.92291 0.91629 0.90296 0.99822 0.90969 0.94595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.69 10.24 71.24 0.73 -0.96 16 2 C 0.06 2.30 7.22 43.10 0.31 2.61 16 3 N -0.33 -12.20 12.58 -47.38 -0.60 -12.80 16 4 N -0.39 -13.87 4.01 -369.56 -1.48 -15.35 16 5 C 0.10 2.42 11.47 127.77 1.47 3.88 16 6 C 0.07 2.95 10.45 83.54 0.87 3.82 16 7 C -0.24 -9.77 4.87 -20.14 -0.10 -9.87 16 8 C 0.23 9.35 3.22 44.59 0.14 9.49 16 9 H 0.04 1.58 8.12 -2.39 -0.02 1.56 16 10 C -0.11 -3.57 6.46 31.78 0.21 -3.36 16 11 C -0.13 -4.91 7.10 32.06 0.23 -4.68 16 12 C 0.15 7.45 5.91 86.93 0.51 7.96 16 13 N -0.61 -30.43 2.71 -671.95 -1.82 -32.25 16 14 C -0.21 -11.50 9.52 84.03 0.80 -10.70 16 15 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 16 C -0.06 -3.60 5.49 84.86 0.47 -3.13 16 17 N -0.95 -55.54 10.08 21.65 0.22 -55.32 16 18 Si 0.97 45.96 29.55 68.60 2.03 47.99 16 19 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 22 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 23 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.09 2.05 7.96 -2.39 -0.02 2.03 16 25 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 27 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.15 6.83 7.99 -2.91 -0.02 6.80 16 29 H 0.09 2.49 8.14 -2.39 -0.02 2.48 16 30 H 0.06 2.00 7.84 -2.39 -0.02 1.98 16 31 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 33 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 34 H 0.07 4.01 5.85 -2.39 -0.01 4.00 16 35 H 0.24 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -66.84 289.39 5.04 -61.80 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 1.06 Total: 10.87 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 5.64 Total: -4.94 kcal Atomic # 7 Polarization: -112.04 SS G_CDS: -3.68 Total: -115.72 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -66.84 5.04 -61.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366093667.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.775 kcal (2) G-P(sol) polarization free energy of solvation -66.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds