Wall clock time and date at job start Sun Mar 29 2020 21:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.07999 * 119.99964 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00047 * 180.02562 * 7 2 1 10 10 N 1.46895 * 109.47051 * 180.02562 * 9 7 2 11 11 C 1.46846 * 111.00322 * 66.04398 * 10 9 7 12 12 C 1.53041 * 109.52008 * 174.15976 * 11 10 9 13 13 C 1.53117 * 109.27735 * 59.18108 * 12 11 10 14 14 C 1.53119 * 109.16174 * 302.33944 * 13 12 11 15 15 H 1.08996 * 109.50469 * 297.68152 * 14 13 12 16 16 C 1.50698 * 109.50262 * 177.59712 * 14 13 12 17 17 C 1.39869 * 125.90089 * 325.00054 * 16 14 13 18 18 C 1.35316 * 107.92109 * 180.02562 * 17 16 14 19 19 N 1.34944 * 107.74485 * 359.97438 * 18 17 16 20 20 H 0.97000 * 126.03445 * 180.02562 * 19 18 17 21 21 N 1.30836 * 125.89646 * 144.69657 * 16 14 13 22 22 C 1.46847 * 110.99890 * 301.83128 * 10 9 7 23 23 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 24 24 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 25 25 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 26 26 H 1.08997 * 109.46177 * 294.17368 * 11 10 9 27 27 H 1.08997 * 109.45850 * 54.14723 * 11 10 9 28 28 H 1.09003 * 109.49884 * 179.12106 * 12 11 10 29 29 H 1.09004 * 109.50584 * 299.23807 * 12 11 10 30 30 H 1.08998 * 109.52449 * 62.24504 * 13 12 11 31 31 H 1.08998 * 109.52128 * 182.43872 * 13 12 11 32 32 H 1.07998 * 126.03784 * 0.02562 * 17 16 14 33 33 H 1.08007 * 126.12218 * 179.97438 * 18 17 16 34 34 H 1.09009 * 109.46441 * 305.86091 * 22 10 9 35 35 H 1.08998 * 109.46181 * 65.82103 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 1.4646 -2.1294 0.0099 9 6 3.5116 -1.1941 0.0064 10 7 4.0012 -2.5791 0.0123 11 6 3.6523 -3.2661 -1.2378 12 6 4.3005 -4.6523 -1.2576 13 6 3.8049 -5.4593 -0.0544 14 6 4.1378 -4.6989 1.2323 15 1 5.2190 -4.5960 1.3248 16 6 3.6012 -5.4580 2.4184 17 6 2.4168 -6.2013 2.4489 18 6 2.2872 -6.7274 3.6888 19 7 3.3521 -6.3315 4.4170 20 1 3.5256 -6.5582 5.3440 21 7 4.1656 -5.5400 3.5959 22 6 3.4944 -3.3114 1.1799 23 1 -0.4850 0.8401 -0.0041 24 1 3.8752 -0.6844 -0.8859 25 1 3.8746 -0.6762 0.8940 26 1 2.5694 -3.3705 -1.3047 27 1 4.0140 -2.6838 -2.0852 28 1 4.0285 -5.1680 -2.1786 29 1 5.3842 -4.5481 -1.2045 30 1 2.7262 -5.5969 -0.1274 31 1 4.2971 -6.4317 -0.0405 32 1 1.7275 -6.3322 1.6278 33 1 1.4766 -7.3522 4.0338 34 1 3.7414 -2.7620 2.0885 35 1 2.4122 -3.4155 1.1017 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373937345.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:53 Heat of formation + Delta-G solvation = 68.715247 kcal Electronic energy + Delta-G solvation = -16740.107992 eV Core-core repulsion = 14160.208070 eV Total energy + Delta-G solvation = -2579.899922 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.03272 -38.24238 -34.02921 -32.30503 -31.49275 -29.79254 -29.20943 -27.28381 -23.71197 -23.13735 -21.46590 -21.03640 -19.42109 -18.72204 -17.94150 -16.71955 -15.12960 -14.71745 -14.31460 -14.10579 -14.01735 -13.47871 -13.43412 -13.06883 -12.56997 -12.39606 -12.00220 -11.83424 -11.24219 -11.00806 -10.81156 -10.57656 -10.31857 -10.29003 -9.99392 -9.88145 -9.76739 -9.44860 -9.06901 -8.56520 -8.54934 -7.13225 -6.07337 -4.06585 2.04438 2.98696 3.01946 3.30438 3.37957 3.42848 4.42944 4.69713 4.93955 5.13449 5.26131 5.30426 5.43255 5.55066 5.78223 5.86571 5.89692 6.06108 6.10667 6.17414 6.31011 6.37223 6.52113 6.56058 6.71868 6.83236 6.84892 6.96370 7.02889 7.13802 7.39973 7.60865 7.87424 8.11490 8.18965 8.48730 8.95723 9.55994 11.05632 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.027104 B = 0.007008 C = 0.006255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.797814 B = 3994.423892 C = 4475.612074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.549 4.549 8 H 0.076 0.924 9 C 0.154 3.846 10 N -0.534 5.534 11 C 0.059 3.941 12 C -0.116 4.116 13 C -0.106 4.106 14 C -0.008 4.008 15 H 0.085 0.915 16 C 0.098 3.902 17 C -0.261 4.261 18 C 0.050 3.950 19 N -0.486 5.486 20 H 0.435 0.565 21 N -0.297 5.297 22 C 0.079 3.921 23 H 0.263 0.737 24 H 0.025 0.975 25 H 0.029 0.971 26 H 0.043 0.957 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.146 0.854 33 H 0.173 0.827 34 H 0.064 0.936 35 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.893 -13.083 3.939 14.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.588 4.588 8 H 0.094 0.906 9 C 0.027 3.973 10 N -0.258 5.258 11 C -0.070 4.070 12 C -0.153 4.153 13 C -0.144 4.144 14 C -0.029 4.029 15 H 0.104 0.896 16 C -0.070 4.070 17 C -0.291 4.291 18 C -0.097 4.097 19 N -0.193 5.193 20 H 0.278 0.722 21 N -0.120 5.120 22 C -0.051 4.051 23 H 0.072 0.928 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.164 0.836 33 H 0.190 0.810 34 H 0.083 0.917 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.227 -12.602 4.691 15.266 hybrid contribution -1.438 0.529 0.064 1.534 sum 5.789 -12.073 4.755 14.208 Atomic orbital electron populations 1.69932 1.06359 1.26918 1.50666 1.24971 0.94687 0.99199 0.94239 0.86812 0.80497 0.83604 0.78621 1.20192 1.21365 1.18763 1.21724 0.90739 0.94692 1.51638 0.90640 1.20180 0.94582 0.85626 0.96916 1.62324 1.58637 1.03572 1.01218 1.21924 0.98751 0.93276 0.93036 1.21616 1.00806 0.95979 0.96946 1.21550 1.01326 0.97755 0.93760 1.19679 1.00617 0.94073 0.88560 0.89630 1.22405 0.93969 0.96852 0.93741 1.21475 1.01544 1.07539 0.98525 1.22526 0.93210 1.01127 0.92878 1.46311 1.18161 1.41600 1.13262 0.72221 1.77303 1.17419 1.14557 1.02722 1.21784 0.97952 0.90979 0.94354 0.92759 0.95677 0.95286 0.93873 0.91765 0.92104 0.91749 0.91731 0.92440 0.83579 0.81006 0.91700 0.93318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.55 -15.41 8.29 -34.44 -0.29 -15.69 16 8 H 0.08 2.29 6.08 -52.49 -0.32 1.97 16 9 C 0.15 3.76 4.20 -4.98 -0.02 3.74 16 10 N -0.53 -11.35 4.86 -236.11 -1.15 -12.50 16 11 C 0.06 1.12 5.14 -3.83 -0.02 1.10 16 12 C -0.12 -1.74 6.09 -26.65 -0.16 -1.90 16 13 C -0.11 -1.56 4.92 -26.61 -0.13 -1.69 16 14 C -0.01 -0.14 2.81 -91.69 -0.26 -0.40 16 15 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 16 C 0.10 1.60 6.13 -82.41 -0.51 1.10 16 17 C -0.26 -3.74 9.97 -40.01 -0.40 -4.14 16 18 C 0.05 0.57 11.99 -17.23 -0.21 0.36 16 19 N -0.49 -5.94 7.36 30.45 0.22 -5.72 16 20 H 0.43 3.67 8.96 -182.61 -1.64 2.03 16 21 N -0.30 -4.85 12.70 33.67 0.43 -4.42 16 22 C 0.08 1.60 4.27 -3.83 -0.02 1.59 16 23 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.03 0.61 7.50 -51.93 -0.39 0.22 16 25 H 0.03 0.73 7.19 -51.93 -0.37 0.36 16 26 H 0.04 0.92 7.03 -51.93 -0.37 0.55 16 27 H 0.06 1.20 8.06 -51.93 -0.42 0.78 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.97 7.19 -51.93 -0.37 0.59 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.15 1.94 7.37 -52.49 -0.39 1.55 16 33 H 0.17 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.06 1.40 8.12 -51.92 -0.42 0.98 16 35 H 0.05 1.11 6.57 -51.93 -0.34 0.77 16 LS Contribution 279.40 15.07 4.21 4.21 Total: -1.00 -32.39 279.40 -8.59 -40.98 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.31 Total: 1.23 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -2.10 Total: -13.96 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 0.28 Total: -49.44 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.39 -8.59 -40.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373937345.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.697 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds