Wall clock time and date at job start Sun Mar 29 2020 21:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.07999 * 119.99964 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00047 * 180.02562 * 7 2 1 10 10 N 1.46895 * 109.47051 * 180.02562 * 9 7 2 11 11 C 1.46846 * 111.00322 * 66.04398 * 10 9 7 12 12 C 1.53041 * 109.52008 * 174.15976 * 11 10 9 13 13 C 1.53117 * 109.27735 * 59.18108 * 12 11 10 14 14 C 1.53119 * 109.16174 * 302.33944 * 13 12 11 15 15 H 1.08996 * 109.50469 * 297.68152 * 14 13 12 16 16 C 1.50698 * 109.50262 * 177.59712 * 14 13 12 17 17 C 1.39869 * 125.90089 * 325.00054 * 16 14 13 18 18 C 1.35316 * 107.92109 * 180.02562 * 17 16 14 19 19 N 1.34944 * 107.74485 * 359.97438 * 18 17 16 20 20 H 0.97000 * 126.03445 * 180.02562 * 19 18 17 21 21 N 1.30836 * 125.89646 * 144.69657 * 16 14 13 22 22 C 1.46847 * 110.99890 * 301.83128 * 10 9 7 23 23 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 24 24 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 25 25 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 26 26 H 1.08997 * 109.46177 * 294.17368 * 11 10 9 27 27 H 1.08997 * 109.45850 * 54.14723 * 11 10 9 28 28 H 1.09003 * 109.49884 * 179.12106 * 12 11 10 29 29 H 1.09004 * 109.50584 * 299.23807 * 12 11 10 30 30 H 1.08998 * 109.52449 * 62.24504 * 13 12 11 31 31 H 1.08998 * 109.52128 * 182.43872 * 13 12 11 32 32 H 1.07998 * 126.03784 * 0.02562 * 17 16 14 33 33 H 1.08007 * 126.12218 * 179.97438 * 18 17 16 34 34 H 1.09009 * 109.46441 * 305.86091 * 22 10 9 35 35 H 1.08998 * 109.46181 * 65.82103 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 1.4646 -2.1294 0.0099 9 6 3.5116 -1.1941 0.0064 10 7 4.0012 -2.5791 0.0123 11 6 3.6523 -3.2661 -1.2378 12 6 4.3005 -4.6523 -1.2576 13 6 3.8049 -5.4593 -0.0544 14 6 4.1378 -4.6989 1.2323 15 1 5.2190 -4.5960 1.3248 16 6 3.6012 -5.4580 2.4184 17 6 2.4168 -6.2013 2.4489 18 6 2.2872 -6.7274 3.6888 19 7 3.3521 -6.3315 4.4170 20 1 3.5256 -6.5582 5.3440 21 7 4.1656 -5.5400 3.5959 22 6 3.4944 -3.3114 1.1799 23 1 -0.4850 0.8401 -0.0041 24 1 3.8752 -0.6844 -0.8859 25 1 3.8746 -0.6762 0.8940 26 1 2.5694 -3.3705 -1.3047 27 1 4.0140 -2.6838 -2.0852 28 1 4.0285 -5.1680 -2.1786 29 1 5.3842 -4.5481 -1.2045 30 1 2.7262 -5.5969 -0.1274 31 1 4.2971 -6.4317 -0.0405 32 1 1.7275 -6.3322 1.6278 33 1 1.4766 -7.3522 4.0338 34 1 3.7414 -2.7620 2.0885 35 1 2.4122 -3.4155 1.1017 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373937345.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:53 Heat of formation + Delta-G solvation = 44.903464 kcal Electronic energy + Delta-G solvation = -16741.140548 eV Core-core repulsion = 14160.208070 eV Total energy + Delta-G solvation = -2580.932479 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.12482 -39.78712 -35.72069 -34.17095 -32.96929 -30.87711 -30.52886 -29.22898 -25.48677 -24.56437 -22.93832 -22.30275 -20.91861 -20.11294 -19.01057 -18.74061 -16.86724 -16.15509 -15.94175 -15.55346 -15.37134 -15.10910 -14.67144 -14.49523 -14.30720 -13.76771 -13.56070 -13.38500 -12.98251 -12.87733 -12.30198 -12.18702 -12.02090 -11.73882 -11.69734 -11.47042 -11.31423 -11.14392 -10.78699 -10.27046 -9.61076 -8.97757 -8.31389 -6.36105 1.00543 1.34926 1.36804 1.48981 1.84071 2.08432 2.34029 3.03606 3.29744 3.73565 3.90018 4.08939 4.20701 4.27850 4.43860 4.57594 4.65961 4.73177 4.86269 4.88325 4.92857 4.98698 5.06678 5.11980 5.14528 5.21674 5.31033 5.33472 5.45760 5.61162 5.69963 6.11291 6.35302 6.46652 6.54375 6.70305 6.78403 7.30649 8.84799 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.027104 B = 0.007008 C = 0.006255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.797814 B = 3994.423892 C = 4475.612074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.011 3.989 3 Si 0.947 3.053 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.249 1.249 7 C -0.549 4.549 8 H 0.036 0.964 9 C 0.159 3.841 10 N -0.530 5.530 11 C 0.057 3.943 12 C -0.106 4.106 13 C -0.100 4.100 14 C 0.002 3.998 15 H 0.085 0.915 16 C 0.077 3.923 17 C -0.293 4.293 18 C 0.075 3.925 19 N -0.473 5.473 20 H 0.452 0.548 21 N -0.334 5.334 22 C 0.089 3.911 23 H 0.266 0.734 24 H 0.034 0.966 25 H 0.025 0.975 26 H 0.011 0.989 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.149 0.851 33 H 0.222 0.778 34 H 0.044 0.956 35 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.224 -14.081 4.172 16.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.187 4.187 3 Si 0.771 3.229 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.173 1.173 7 C -0.588 4.588 8 H 0.055 0.945 9 C 0.031 3.969 10 N -0.253 5.253 11 C -0.072 4.072 12 C -0.143 4.143 13 C -0.138 4.138 14 C -0.019 4.019 15 H 0.103 0.897 16 C -0.089 4.089 17 C -0.323 4.323 18 C -0.073 4.073 19 N -0.183 5.183 20 H 0.298 0.702 21 N -0.158 5.158 22 C -0.040 4.040 23 H 0.075 0.925 24 H 0.052 0.948 25 H 0.043 0.957 26 H 0.030 0.970 27 H 0.087 0.913 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.167 0.833 33 H 0.238 0.762 34 H 0.062 0.938 35 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 8.586 -13.622 4.931 16.840 hybrid contribution -1.935 0.736 0.065 2.071 sum 6.652 -12.886 4.996 15.338 Atomic orbital electron populations 1.70079 1.08260 1.28106 1.52293 1.25912 0.95542 1.03365 0.93880 0.85705 0.79422 0.78408 0.79413 1.18748 1.21009 1.17299 1.21915 0.92667 0.93311 1.50886 0.94538 1.20058 0.91995 0.87962 0.96867 1.62372 1.57894 1.02533 1.02500 1.22030 0.97293 0.95842 0.91988 1.21586 1.01082 0.93289 0.98375 1.21530 1.01260 0.98603 0.92398 1.19511 1.00009 0.92005 0.90401 0.89696 1.22375 0.95131 0.97741 0.93697 1.21697 1.01483 1.08822 1.00264 1.23195 0.93159 0.99449 0.91487 1.46349 1.17701 1.40348 1.13873 0.70193 1.77200 1.19151 1.16224 1.03206 1.21647 0.96129 0.93137 0.93126 0.92541 0.94812 0.95740 0.97023 0.91317 0.89353 0.90439 0.92374 0.89732 0.83329 0.76195 0.93773 0.96752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.76 13.96 21.45 0.30 -59.46 16 2 C 0.01 0.64 5.47 84.66 0.46 1.11 16 3 Si 0.95 44.79 27.47 68.60 1.88 46.67 16 4 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 6 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 7 C -0.55 -31.91 8.29 25.60 0.21 -31.70 16 8 H 0.04 2.36 6.08 -2.91 -0.02 2.34 16 9 C 0.16 7.86 4.20 85.56 0.36 8.22 16 10 N -0.53 -22.82 4.86 -900.93 -4.38 -27.20 16 11 C 0.06 2.17 5.14 86.33 0.44 2.61 16 12 C -0.11 -2.99 6.09 30.65 0.19 -2.80 16 13 C -0.10 -2.83 4.92 30.67 0.15 -2.68 16 14 C 0.00 0.05 2.81 -11.49 -0.03 0.02 16 15 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 16 C 0.08 2.50 6.13 43.10 0.26 2.76 16 17 C -0.29 -8.11 9.97 21.99 0.22 -7.89 16 18 C 0.08 1.53 11.99 83.54 1.00 2.53 16 19 N -0.47 -10.59 7.36 -57.59 -0.42 -11.02 16 20 H 0.45 6.50 8.96 -213.33 -1.91 4.58 16 21 N -0.33 -10.66 12.70 -47.39 -0.60 -11.26 16 22 C 0.09 3.78 4.27 86.33 0.37 4.14 16 23 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 24 H 0.03 1.61 7.50 -2.38 -0.02 1.60 16 25 H 0.02 1.23 7.19 -2.39 -0.02 1.21 16 26 H 0.01 0.51 7.03 -2.39 -0.02 0.49 16 27 H 0.07 2.53 8.06 -2.39 -0.02 2.52 16 28 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.06 1.72 7.19 -2.39 -0.02 1.71 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.15 3.90 7.37 -2.91 -0.02 3.88 16 33 H 0.22 2.17 8.06 -2.91 -0.02 2.15 16 34 H 0.04 1.99 8.12 -2.38 -0.02 1.98 16 35 H 0.01 0.70 6.57 -2.39 -0.02 0.68 16 Total: -1.00 -72.73 279.40 -0.46 -73.19 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -0.88 Total: 12.75 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: 3.64 Total: -23.68 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -5.10 Total: -108.94 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.67 kcal Total: -72.73 -0.46 -73.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373937345.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.095 kcal (2) G-P(sol) polarization free energy of solvation -72.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds