Wall clock time and date at job start Sun Mar 29 2020 21:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99441 * 2 1 4 4 H 1.48507 * 109.46829 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47080 * 299.99941 * 3 2 1 6 6 H 1.48496 * 109.47310 * 60.00157 * 3 2 1 7 7 C 1.37879 * 120.00684 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00497 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99500 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46966 * 179.97438 * 9 7 2 11 11 C 1.46843 * 111.00022 * 65.79105 * 10 9 7 12 12 C 1.53039 * 109.52391 * 185.84211 * 11 10 9 13 13 C 1.53124 * 109.27498 * 300.81655 * 12 11 10 14 14 C 1.53126 * 109.15878 * 57.65601 * 13 12 11 15 15 H 1.08994 * 109.50285 * 62.28827 * 14 13 12 16 16 C 1.50704 * 109.49841 * 182.40228 * 14 13 12 17 17 C 1.39866 * 125.90233 * 34.71834 * 16 14 13 18 18 C 1.35314 * 107.91931 * 179.85922 * 17 16 14 19 19 N 1.34949 * 107.74871 * 0.39528 * 18 17 16 20 20 H 0.96997 * 126.03660 * 179.75027 * 19 18 17 21 21 N 1.30842 * 125.89251 * 215.02135 * 16 14 13 22 22 C 1.46854 * 111.00034 * 189.99984 * 10 9 7 23 23 H 0.96992 * 120.00614 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47421 * 59.99878 * 9 7 2 25 25 H 1.09005 * 109.47110 * 299.99686 * 9 7 2 26 26 H 1.09001 * 109.45906 * 305.85080 * 11 10 9 27 27 H 1.08994 * 109.46526 * 65.83386 * 11 10 9 28 28 H 1.08997 * 109.50468 * 180.87980 * 12 11 10 29 29 H 1.09004 * 109.50358 * 60.75551 * 12 11 10 30 30 H 1.08998 * 109.52745 * 297.74929 * 13 12 11 31 31 H 1.08999 * 109.52030 * 177.55385 * 13 12 11 32 32 H 1.07995 * 126.03931 * 359.97438 * 17 16 14 33 33 H 1.08001 * 126.12561 * 180.14183 * 18 17 16 34 34 H 1.08999 * 109.45788 * 54.14266 * 22 10 9 35 35 H 1.09003 * 109.45264 * 294.17148 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8902 2.3966 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2059 -3.6156 0.0005 11 6 2.9751 -3.6502 1.2509 12 6 4.0552 -4.7305 1.1572 13 6 3.3921 -6.0877 0.9063 14 6 2.5582 -6.0103 -0.3757 15 1 3.2112 -5.7984 -1.2223 16 6 1.8549 -7.3244 -0.5984 17 6 1.3514 -8.1647 0.3999 18 6 0.7925 -9.2394 -0.2032 19 7 0.9450 -9.0889 -1.5356 20 1 0.6439 -9.7090 -2.2180 21 7 1.6148 -7.8790 -1.7589 22 6 1.5217 -4.8930 -0.2375 23 1 -0.4851 0.8399 0.0004 24 1 0.6249 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8904 26 1 3.4449 -2.6804 1.4152 27 1 2.3072 -3.8758 2.0821 28 1 4.6158 -4.7665 2.0912 29 1 4.7317 -4.4983 0.3346 30 1 2.7452 -6.3381 1.7470 31 1 4.1600 -6.8533 0.7955 32 1 1.3986 -7.9863 1.4640 33 1 0.3141 -10.0708 0.2931 34 1 0.9358 -4.8258 -1.1542 35 1 0.8606 -5.1125 0.6009 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373937346.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:56 Heat of formation + Delta-G solvation = 65.902713 kcal Electronic energy + Delta-G solvation = -16467.662069 eV Core-core repulsion = 13887.640186 eV Total energy + Delta-G solvation = -2580.021883 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.14250 -38.18682 -33.97691 -32.33270 -31.48546 -29.90259 -29.31174 -26.90447 -23.85599 -23.02371 -21.54691 -21.26812 -19.56773 -18.74810 -18.02493 -16.22130 -15.20719 -14.74589 -14.38980 -14.24653 -14.00417 -13.55573 -13.40627 -13.23158 -12.59860 -12.32854 -11.97257 -11.80939 -11.18602 -10.96053 -10.75505 -10.63455 -10.53975 -10.21105 -10.10738 -9.98832 -9.71102 -9.25790 -9.01774 -8.67561 -8.38762 -7.14079 -5.97577 -3.98549 1.93569 2.86689 2.91743 3.34712 3.41971 3.47081 4.46179 4.63010 4.82468 5.13692 5.22273 5.35662 5.38376 5.51027 5.69501 5.77214 5.79309 5.94929 6.01098 6.10334 6.27096 6.32718 6.34713 6.50310 6.61835 6.71713 6.83258 6.84877 7.29314 7.39162 7.42683 7.77351 7.86850 8.16993 8.29688 8.62581 9.09805 9.65518 11.13485 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.043280 B = 0.005375 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.790770 B = 5208.071018 C = 5576.551194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.504 4.504 8 H 0.065 0.935 9 C 0.193 3.807 10 N -0.536 5.536 11 C 0.063 3.937 12 C -0.117 4.117 13 C -0.105 4.105 14 C -0.007 4.007 15 H 0.091 0.909 16 C 0.096 3.904 17 C -0.265 4.265 18 C 0.050 3.950 19 N -0.485 5.485 20 H 0.436 0.564 21 N -0.294 5.294 22 C 0.071 3.929 23 H 0.260 0.740 24 H 0.030 0.970 25 H -0.009 1.009 26 H 0.083 0.917 27 H 0.019 0.981 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.146 0.854 33 H 0.173 0.827 34 H 0.067 0.933 35 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.195 -17.392 1.984 17.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.543 4.543 8 H 0.083 0.917 9 C 0.068 3.932 10 N -0.260 5.260 11 C -0.066 4.066 12 C -0.155 4.155 13 C -0.143 4.143 14 C -0.028 4.028 15 H 0.109 0.891 16 C -0.072 4.072 17 C -0.294 4.294 18 C -0.097 4.097 19 N -0.192 5.192 20 H 0.279 0.721 21 N -0.116 5.116 22 C -0.058 4.058 23 H 0.070 0.930 24 H 0.048 0.952 25 H 0.008 0.992 26 H 0.102 0.898 27 H 0.037 0.963 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.163 0.837 33 H 0.190 0.810 34 H 0.086 0.914 35 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 3.486 -17.089 0.350 17.445 hybrid contribution -0.680 0.241 1.204 1.404 sum 2.805 -16.848 1.554 17.150 Atomic orbital electron populations 1.69970 1.06084 1.26589 1.51320 1.24994 0.94838 0.99297 0.95550 0.86455 0.80119 0.83497 0.77438 1.19616 1.21066 1.21183 1.21216 0.93565 0.89894 1.49617 0.91720 1.19708 0.90074 0.87297 0.96082 1.61991 1.27867 1.02319 1.33865 1.21966 0.94954 0.99074 0.90593 1.21640 0.98359 0.94249 1.01273 1.21562 0.98521 0.97721 0.96518 1.19643 0.96256 0.87432 0.99433 0.89113 1.22461 0.97640 0.96953 0.90143 1.21456 1.10399 0.96821 1.00754 1.22534 1.01580 1.00740 0.84876 1.46353 1.47662 1.18921 1.06311 0.72128 1.77359 1.16513 0.95102 1.22661 1.21908 0.94064 0.89551 1.00308 0.93042 0.95229 0.99164 0.89816 0.96293 0.92138 0.91320 0.92076 0.92328 0.83658 0.80994 0.91404 0.95805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.50 -14.35 8.43 -34.44 -0.29 -14.64 16 8 H 0.06 1.82 7.12 -52.49 -0.37 1.44 16 9 C 0.19 5.18 4.72 -4.98 -0.02 5.15 16 10 N -0.54 -11.90 4.65 -236.11 -1.10 -12.99 16 11 C 0.06 1.22 5.30 -3.83 -0.02 1.20 16 12 C -0.12 -1.81 6.09 -26.65 -0.16 -1.97 16 13 C -0.10 -1.49 4.92 -26.60 -0.13 -1.62 16 14 C -0.01 -0.11 2.81 -91.69 -0.26 -0.37 16 15 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 16 C 0.10 1.46 6.13 -82.40 -0.51 0.96 16 17 C -0.26 -3.36 9.97 -40.01 -0.40 -3.76 16 18 C 0.05 0.50 11.99 -17.22 -0.21 0.30 16 19 N -0.48 -5.42 7.36 30.45 0.22 -5.20 16 20 H 0.44 3.27 8.96 -182.61 -1.64 1.64 16 21 N -0.29 -4.55 12.70 33.67 0.43 -4.13 16 22 C 0.07 1.38 4.73 -3.83 -0.02 1.36 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.03 0.85 7.99 -51.93 -0.41 0.44 16 25 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 26 H 0.08 1.77 6.70 -51.93 -0.35 1.42 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 0.82 7.19 -51.93 -0.37 0.45 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.15 1.64 7.36 -52.49 -0.39 1.25 16 33 H 0.17 0.99 8.06 -52.49 -0.42 0.56 16 34 H 0.07 1.39 8.01 -51.93 -0.42 0.97 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 286.07 15.07 4.31 4.31 Total: -1.00 -32.53 286.07 -9.00 -41.53 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -6.46 Total: -2.01 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -2.11 Total: -11.92 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.29 Total: -48.75 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.53 -9.00 -41.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373937346.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.432 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds