Wall clock time and date at job start Sun Mar 29 2020 21:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99441 * 2 1 4 4 H 1.48507 * 109.46829 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47080 * 299.99941 * 3 2 1 6 6 H 1.48496 * 109.47310 * 60.00157 * 3 2 1 7 7 C 1.37879 * 120.00684 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00497 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99500 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46966 * 179.97438 * 9 7 2 11 11 C 1.46843 * 111.00022 * 65.79105 * 10 9 7 12 12 C 1.53039 * 109.52391 * 185.84211 * 11 10 9 13 13 C 1.53124 * 109.27498 * 300.81655 * 12 11 10 14 14 C 1.53126 * 109.15878 * 57.65601 * 13 12 11 15 15 H 1.08994 * 109.50285 * 62.28827 * 14 13 12 16 16 C 1.50704 * 109.49841 * 182.40228 * 14 13 12 17 17 C 1.39866 * 125.90233 * 34.71834 * 16 14 13 18 18 C 1.35314 * 107.91931 * 179.85922 * 17 16 14 19 19 N 1.34949 * 107.74871 * 0.39528 * 18 17 16 20 20 H 0.96997 * 126.03660 * 179.75027 * 19 18 17 21 21 N 1.30842 * 125.89251 * 215.02135 * 16 14 13 22 22 C 1.46854 * 111.00034 * 189.99984 * 10 9 7 23 23 H 0.96992 * 120.00614 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47421 * 59.99878 * 9 7 2 25 25 H 1.09005 * 109.47110 * 299.99686 * 9 7 2 26 26 H 1.09001 * 109.45906 * 305.85080 * 11 10 9 27 27 H 1.08994 * 109.46526 * 65.83386 * 11 10 9 28 28 H 1.08997 * 109.50468 * 180.87980 * 12 11 10 29 29 H 1.09004 * 109.50358 * 60.75551 * 12 11 10 30 30 H 1.08998 * 109.52745 * 297.74929 * 13 12 11 31 31 H 1.08999 * 109.52030 * 177.55385 * 13 12 11 32 32 H 1.07995 * 126.03931 * 359.97438 * 17 16 14 33 33 H 1.08001 * 126.12561 * 180.14183 * 18 17 16 34 34 H 1.08999 * 109.45788 * 54.14266 * 22 10 9 35 35 H 1.09003 * 109.45264 * 294.17148 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8902 2.3966 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2059 -3.6156 0.0005 11 6 2.9751 -3.6502 1.2509 12 6 4.0552 -4.7305 1.1572 13 6 3.3921 -6.0877 0.9063 14 6 2.5582 -6.0103 -0.3757 15 1 3.2112 -5.7984 -1.2223 16 6 1.8549 -7.3244 -0.5984 17 6 1.3514 -8.1647 0.3999 18 6 0.7925 -9.2394 -0.2032 19 7 0.9450 -9.0889 -1.5356 20 1 0.6439 -9.7090 -2.2180 21 7 1.6148 -7.8790 -1.7589 22 6 1.5217 -4.8930 -0.2375 23 1 -0.4851 0.8399 0.0004 24 1 0.6249 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8904 26 1 3.4449 -2.6804 1.4152 27 1 2.3072 -3.8758 2.0821 28 1 4.6158 -4.7665 2.0912 29 1 4.7317 -4.4983 0.3346 30 1 2.7452 -6.3381 1.7470 31 1 4.1600 -6.8533 0.7955 32 1 1.3986 -7.9863 1.4640 33 1 0.3141 -10.0708 0.2931 34 1 0.9358 -4.8258 -1.1542 35 1 0.8606 -5.1125 0.6009 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373937346.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:56 Heat of formation + Delta-G solvation = 42.745496 kcal Electronic energy + Delta-G solvation = -16468.666241 eV Core-core repulsion = 13887.640186 eV Total energy + Delta-G solvation = -2581.026055 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.12523 -39.71279 -35.72139 -34.13701 -32.91686 -30.87880 -30.58142 -28.90669 -25.59500 -24.48622 -23.15589 -22.33219 -20.98058 -19.97031 -18.94742 -18.41524 -16.94483 -16.11116 -16.04259 -15.50955 -15.42176 -15.05450 -14.65051 -14.39882 -14.20571 -13.83473 -13.53945 -13.42038 -12.97800 -12.64317 -12.55132 -12.23054 -12.08386 -11.75744 -11.59829 -11.45515 -11.20215 -11.08779 -10.61502 -10.28572 -9.60467 -8.99437 -8.19677 -6.30203 1.01778 1.42082 1.43118 1.57121 1.84797 2.08458 2.41854 3.12535 3.28343 3.74007 3.87404 4.04531 4.19745 4.27590 4.41335 4.45237 4.65675 4.70971 4.81182 4.84499 4.89884 4.97173 5.06632 5.13782 5.19328 5.28580 5.29580 5.37930 5.55736 5.67240 5.70875 6.06075 6.38509 6.55183 6.65435 6.79152 6.86785 7.39754 8.92165 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.043280 B = 0.005375 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.790770 B = 5208.071018 C = 5576.551194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.001 4.001 3 Si 0.973 3.027 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.066 0.934 9 C 0.208 3.792 10 N -0.544 5.544 11 C 0.061 3.939 12 C -0.108 4.108 13 C -0.096 4.096 14 C 0.003 3.997 15 H 0.074 0.926 16 C 0.076 3.924 17 C -0.289 4.289 18 C 0.075 3.925 19 N -0.474 5.474 20 H 0.451 0.549 21 N -0.339 5.339 22 C 0.077 3.923 23 H 0.264 0.736 24 H -0.004 1.004 25 H -0.038 1.038 26 H 0.064 0.936 27 H 0.017 0.983 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.159 0.841 33 H 0.224 0.776 34 H 0.043 0.957 35 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.361 -18.966 2.953 19.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.084 0.916 9 C 0.082 3.918 10 N -0.268 5.268 11 C -0.067 4.067 12 C -0.145 4.145 13 C -0.134 4.134 14 C -0.018 4.018 15 H 0.093 0.907 16 C -0.091 4.091 17 C -0.318 4.318 18 C -0.073 4.073 19 N -0.184 5.184 20 H 0.297 0.703 21 N -0.163 5.163 22 C -0.052 4.052 23 H 0.073 0.927 24 H 0.015 0.985 25 H -0.021 1.021 26 H 0.082 0.918 27 H 0.035 0.965 28 H 0.111 0.889 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.176 0.824 33 H 0.240 0.760 34 H 0.062 0.938 35 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 4.667 -18.690 1.309 19.309 hybrid contribution -1.132 0.627 0.875 1.562 sum 3.535 -18.064 2.184 18.535 Atomic orbital electron populations 1.70105 1.07892 1.27876 1.51963 1.25966 0.95744 1.03367 0.94734 0.85280 0.79032 0.78275 0.77704 1.18474 1.20522 1.20237 1.21493 0.93718 0.90842 1.49849 0.91593 1.19357 0.90166 0.89201 0.93099 1.61930 1.26909 1.02311 1.35680 1.22037 0.95614 0.99941 0.89115 1.21598 0.96880 0.93203 1.02856 1.21532 0.98868 0.97498 0.95521 1.19444 0.95195 0.87009 1.00165 0.90722 1.22335 0.98658 0.96873 0.91207 1.21716 1.11516 0.97396 1.01160 1.23262 0.99179 1.00832 0.83985 1.46392 1.46486 1.17884 1.07614 0.70284 1.77257 1.18366 0.97232 1.23476 1.21867 0.94971 0.89510 0.98896 0.92686 0.98545 1.02060 0.91795 0.96506 0.88935 0.91674 0.90917 0.89793 0.82386 0.76008 0.93795 0.96030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.13 13.29 21.45 0.28 -57.85 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.52 -30.54 8.43 25.60 0.22 -30.33 16 8 H 0.07 3.77 7.12 -2.91 -0.02 3.75 16 9 C 0.21 11.78 4.72 85.56 0.40 12.19 16 10 N -0.54 -25.15 4.65 -900.93 -4.19 -29.33 16 11 C 0.06 2.41 5.30 86.33 0.46 2.86 16 12 C -0.11 -3.13 6.09 30.65 0.19 -2.94 16 13 C -0.10 -2.53 4.92 30.68 0.15 -2.38 16 14 C 0.00 0.09 2.81 -11.49 -0.03 0.06 16 15 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 16 C 0.08 2.26 6.13 43.10 0.26 2.52 16 17 C -0.29 -6.64 9.97 21.99 0.22 -6.42 16 18 C 0.08 1.25 11.99 83.54 1.00 2.25 16 19 N -0.47 -9.53 7.36 -57.59 -0.42 -9.96 16 20 H 0.45 5.68 8.96 -213.33 -1.91 3.77 16 21 N -0.34 -10.33 12.70 -47.38 -0.60 -10.93 16 22 C 0.08 3.11 4.73 86.32 0.41 3.52 16 23 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 24 H 0.00 -0.22 7.99 -2.39 -0.02 -0.24 16 25 H -0.04 -2.33 8.12 -2.38 -0.02 -2.35 16 26 H 0.06 2.75 6.70 -2.39 -0.02 2.73 16 27 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.07 1.77 7.19 -2.39 -0.02 1.75 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.16 3.11 7.36 -2.91 -0.02 3.09 16 33 H 0.22 1.31 8.06 -2.91 -0.02 1.28 16 34 H 0.04 1.93 8.01 -2.39 -0.02 1.91 16 35 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -73.43 286.07 0.00 -73.43 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -0.83 Total: 5.68 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: 3.74 Total: -18.24 kcal Atomic # 7 Polarization: -103.15 SS G_CDS: -4.93 Total: -108.08 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -73.43 0.00 -73.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373937346.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.177 kcal (2) G-P(sol) polarization free energy of solvation -73.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds