Wall clock time and date at job start Sun Mar 29 2020 21:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.46966 * 2 1 4 4 C 1.40072 * 119.87629 * 125.00079 * 3 2 1 5 5 C 1.35706 * 119.52792 * 180.02562 * 4 3 2 6 6 C 1.50704 * 120.37305 * 180.02562 * 5 4 3 7 7 N 1.36225 * 119.25603 * 359.97438 * 5 4 3 8 8 H 0.96997 * 120.13517 * 179.72814 * 7 5 4 9 9 C 1.37493 * 119.73236 * 0.02562 * 7 5 4 10 10 N 1.31433 * 119.76956 * 179.97438 * 9 7 5 11 11 C 1.46506 * 120.00320 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.46955 * 359.97438 * 11 10 9 13 13 C 1.52999 * 109.47308 * 240.00467 * 11 10 9 14 14 C 1.50692 * 109.47259 * 119.99801 * 11 10 9 15 15 H 1.07999 * 120.00169 * 0.02562 * 14 11 10 16 16 C 1.37877 * 120.00197 * 180.02562 * 14 11 10 17 17 N 1.31522 * 119.99788 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 120.00253 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47124 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47058 * 119.99481 * 18 16 14 21 21 H 1.48500 * 109.47378 * 239.99501 * 18 16 14 22 22 N 1.31384 * 119.87878 * 304.97520 * 3 2 1 23 23 H 1.08997 * 109.46914 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47439 * 300.00089 * 1 2 3 25 25 H 1.09006 * 109.47015 * 60.00147 * 1 2 3 26 26 H 1.08993 * 109.47439 * 239.99911 * 2 1 3 27 27 H 1.08996 * 109.47018 * 119.99757 * 2 1 3 28 28 H 1.08003 * 120.23239 * 359.97409 * 4 3 2 29 29 H 1.08997 * 109.46978 * 269.97444 * 6 5 4 30 30 H 1.09000 * 109.46970 * 29.98051 * 6 5 4 31 31 H 1.09010 * 109.46831 * 149.97427 * 6 5 4 32 32 H 1.09005 * 109.46438 * 299.99491 * 13 11 10 33 33 H 1.08995 * 109.47516 * 59.99486 * 13 11 10 34 34 H 1.08997 * 109.47279 * 180.02562 * 13 11 10 35 35 H 0.97003 * 119.99891 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9217 1.8464 0.9949 5 6 3.3691 3.1276 0.9885 6 6 4.3268 3.6056 2.0494 7 7 2.9437 3.9764 0.0116 8 1 3.2524 4.8959 -0.0029 9 6 2.0703 3.5263 -0.9501 10 7 1.6590 4.3447 -1.8927 11 6 0.7288 3.8703 -2.9203 12 1 0.4931 2.8214 -2.7406 13 6 1.3739 4.0184 -4.2997 14 6 -0.5370 4.6863 -2.8674 15 1 -0.6383 5.4793 -2.1413 16 6 -1.5657 4.4206 -3.7460 17 7 -1.4421 3.4552 -4.6307 18 14 -3.1351 5.4316 -3.6800 19 1 -3.0236 6.4491 -2.6041 20 1 -3.3411 6.1116 -4.9841 21 1 -4.2880 4.5385 -3.3999 22 7 1.6348 2.2555 -0.9335 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.2483 1.1601 1.7622 29 1 3.7643 4.0013 2.8949 30 1 4.9455 2.7723 2.3824 31 1 4.9634 4.3890 1.6378 32 1 1.6099 5.0673 -4.4796 33 1 2.2894 3.4282 -4.3380 34 1 0.6817 3.6659 -5.0643 35 1 -2.1658 3.2685 -5.2491 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379972526.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:53 Heat of formation + Delta-G solvation = 55.660191 kcal Electronic energy + Delta-G solvation = -16507.999481 eV Core-core repulsion = 13927.533449 eV Total energy + Delta-G solvation = -2580.466032 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.39471 -35.43634 -35.34266 -33.15759 -31.31103 -30.96308 -28.44794 -27.53158 -24.93388 -24.45346 -22.21870 -20.83618 -19.42862 -17.80651 -17.20935 -15.88412 -15.33028 -14.89641 -14.41896 -13.94641 -13.80517 -13.36008 -13.11221 -13.03907 -12.67803 -12.49098 -11.96548 -11.38201 -11.20273 -10.94629 -10.91985 -10.82669 -10.46080 -10.29150 -10.18446 -9.92061 -9.65424 -9.28025 -8.94164 -8.41803 -7.72726 -6.67595 -5.83382 -3.87521 1.28148 2.35986 3.21315 3.37892 3.44277 3.50570 4.38633 4.42201 4.58355 4.67950 5.01167 5.22256 5.24990 5.45114 5.49866 5.55109 5.60703 5.64455 5.82902 6.03867 6.11707 6.30361 6.45505 6.56134 6.72644 6.95257 7.05219 7.28576 7.46945 7.58754 7.87872 8.11498 8.26224 8.56217 8.79723 9.08006 9.35119 9.76505 11.21945 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.025537 B = 0.007165 C = 0.006400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.171129 B = 3906.924455 C = 4373.611894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.073 4.073 3 C 0.234 3.766 4 C -0.313 4.313 5 C 0.210 3.790 6 C -0.121 4.121 7 N -0.623 5.623 8 H 0.413 0.587 9 C 0.465 3.535 10 N -0.554 5.554 11 C 0.215 3.785 12 H 0.039 0.961 13 C -0.122 4.122 14 C -0.491 4.491 15 H 0.054 0.946 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.285 1.285 22 N -0.506 5.506 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.138 0.862 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.027 0.973 33 H 0.001 0.999 34 H 0.087 0.913 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.485 -5.311 13.824 18.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C 0.058 3.942 4 C -0.344 4.344 5 C 0.091 3.909 6 C -0.178 4.178 7 N -0.244 5.244 8 H 0.250 0.750 9 C 0.098 3.902 10 N -0.280 5.280 11 C 0.107 3.893 12 H 0.057 0.943 13 C -0.181 4.181 14 C -0.530 4.530 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.724 3.276 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.211 1.211 22 N -0.224 5.224 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.094 0.906 28 H 0.156 0.844 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.046 0.954 33 H 0.020 0.980 34 H 0.105 0.895 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.749 -4.446 12.364 16.361 hybrid contribution -0.439 0.450 0.654 0.907 sum 9.310 -3.996 13.018 16.496 Atomic orbital electron populations 1.21680 0.93794 1.01369 1.03405 1.20501 0.97268 0.90600 1.02713 1.21770 0.88501 0.95675 0.88225 1.20792 1.10811 0.95916 1.06891 1.20675 0.91770 0.90498 0.87984 1.21015 0.97490 1.03030 0.96303 1.42244 1.43214 1.14180 1.24717 0.74984 1.20185 0.91367 0.87145 0.91478 1.72587 1.18139 1.31544 1.05736 1.19098 0.88114 0.96577 0.85512 0.94340 1.21731 0.97461 0.98193 1.00704 1.21142 0.98365 1.16759 1.16769 0.92760 1.24901 0.98349 0.95519 0.95546 1.69923 1.32421 1.30613 1.20417 0.86481 0.83319 0.80101 0.77728 1.20004 1.21041 1.21101 1.69496 1.25861 1.01957 1.25132 0.92670 0.93101 0.90697 0.89843 0.90623 0.84447 0.89359 0.89059 0.90532 0.95372 0.97993 0.89461 0.93210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.77 37.16 0.36 -1.74 16 2 C -0.07 -0.97 6.35 -27.88 -0.18 -1.15 16 3 C 0.23 3.92 6.22 -82.10 -0.51 3.40 16 4 C -0.31 -4.11 9.32 -39.80 -0.37 -4.48 16 5 C 0.21 2.63 6.85 -81.55 -0.56 2.08 16 6 C -0.12 -0.85 10.15 36.01 0.37 -0.48 16 7 N -0.62 -10.22 5.41 -10.05 -0.05 -10.27 16 8 H 0.41 5.91 8.85 -40.82 -0.36 5.55 16 9 C 0.47 10.41 8.42 -323.05 -2.72 7.69 16 10 N -0.55 -14.54 10.25 -56.98 -0.58 -15.12 16 11 C 0.22 6.32 2.89 -69.08 -0.20 6.12 16 12 H 0.04 1.22 6.65 -51.93 -0.35 0.87 16 13 C -0.12 -3.44 9.29 37.16 0.35 -3.10 16 14 C -0.49 -15.22 8.84 -34.44 -0.30 -15.52 16 15 H 0.05 1.71 7.81 -52.49 -0.41 1.30 16 16 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 17 N -0.89 -27.33 11.32 55.43 0.63 -26.70 16 18 Si 0.90 22.92 29.54 -169.99 -5.02 17.90 16 19 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.28 -7.16 7.11 56.52 0.40 -6.75 16 22 N -0.51 -11.09 8.28 -10.02 -0.08 -11.17 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 1.39 7.96 -51.93 -0.41 0.97 16 26 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.08 0.74 7.91 -51.93 -0.41 0.33 16 28 H 0.14 1.29 7.98 -52.48 -0.42 0.87 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.47 8.09 -51.93 -0.42 0.05 16 31 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.00 0.03 8.14 -51.93 -0.42 -0.40 16 34 H 0.09 2.58 6.07 -51.93 -0.32 2.27 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 296.16 15.07 4.46 4.46 Total: -1.00 -36.25 296.16 -9.70 -45.95 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.19 Total: 0.52 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -3.86 Total: -5.57 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: -0.09 Total: -63.27 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -36.25 -9.70 -45.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379972526.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.615 kcal (2) G-P(sol) polarization free energy of solvation -36.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds