Wall clock time and date at job start Sun Mar 29 2020 21:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.46966 * 2 1 4 4 C 1.40072 * 119.87629 * 125.00079 * 3 2 1 5 5 C 1.35706 * 119.52792 * 180.02562 * 4 3 2 6 6 C 1.50704 * 120.37305 * 180.02562 * 5 4 3 7 7 N 1.36225 * 119.25603 * 359.97438 * 5 4 3 8 8 H 0.96997 * 120.13517 * 179.72814 * 7 5 4 9 9 C 1.37493 * 119.73236 * 0.02562 * 7 5 4 10 10 N 1.31433 * 119.76956 * 179.97438 * 9 7 5 11 11 C 1.46506 * 120.00320 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.46955 * 359.97438 * 11 10 9 13 13 C 1.52999 * 109.47308 * 240.00467 * 11 10 9 14 14 C 1.50692 * 109.47259 * 119.99801 * 11 10 9 15 15 H 1.07999 * 120.00169 * 0.02562 * 14 11 10 16 16 C 1.37877 * 120.00197 * 180.02562 * 14 11 10 17 17 N 1.31522 * 119.99788 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 120.00253 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47124 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47058 * 119.99481 * 18 16 14 21 21 H 1.48500 * 109.47378 * 239.99501 * 18 16 14 22 22 N 1.31384 * 119.87878 * 304.97520 * 3 2 1 23 23 H 1.08997 * 109.46914 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47439 * 300.00089 * 1 2 3 25 25 H 1.09006 * 109.47015 * 60.00147 * 1 2 3 26 26 H 1.08993 * 109.47439 * 239.99911 * 2 1 3 27 27 H 1.08996 * 109.47018 * 119.99757 * 2 1 3 28 28 H 1.08003 * 120.23239 * 359.97409 * 4 3 2 29 29 H 1.08997 * 109.46978 * 269.97444 * 6 5 4 30 30 H 1.09000 * 109.46970 * 29.98051 * 6 5 4 31 31 H 1.09010 * 109.46831 * 149.97427 * 6 5 4 32 32 H 1.09005 * 109.46438 * 299.99491 * 13 11 10 33 33 H 1.08995 * 109.47516 * 59.99486 * 13 11 10 34 34 H 1.08997 * 109.47279 * 180.02562 * 13 11 10 35 35 H 0.97003 * 119.99891 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9217 1.8464 0.9949 5 6 3.3691 3.1276 0.9885 6 6 4.3268 3.6056 2.0494 7 7 2.9437 3.9764 0.0116 8 1 3.2524 4.8959 -0.0029 9 6 2.0703 3.5263 -0.9501 10 7 1.6590 4.3447 -1.8927 11 6 0.7288 3.8703 -2.9203 12 1 0.4931 2.8214 -2.7406 13 6 1.3739 4.0184 -4.2997 14 6 -0.5370 4.6863 -2.8674 15 1 -0.6383 5.4793 -2.1413 16 6 -1.5657 4.4206 -3.7460 17 7 -1.4421 3.4552 -4.6307 18 14 -3.1351 5.4316 -3.6800 19 1 -3.0236 6.4491 -2.6041 20 1 -3.3411 6.1116 -4.9841 21 1 -4.2880 4.5385 -3.3999 22 7 1.6348 2.2555 -0.9335 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.2483 1.1601 1.7622 29 1 3.7643 4.0013 2.8949 30 1 4.9455 2.7723 2.3824 31 1 4.9634 4.3890 1.6378 32 1 1.6099 5.0673 -4.4796 33 1 2.2894 3.4282 -4.3380 34 1 0.6817 3.6659 -5.0643 35 1 -2.1658 3.2685 -5.2491 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379972526.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:52 Heat of formation + Delta-G solvation = 30.931367 kcal Electronic energy + Delta-G solvation = -16509.071803 eV Core-core repulsion = 13927.533449 eV Total energy + Delta-G solvation = -2581.538354 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.75021 -37.13696 -36.68758 -34.98743 -32.89239 -32.42491 -30.00074 -28.81487 -27.25690 -25.62888 -23.90564 -22.05135 -21.27003 -19.14714 -18.59246 -18.06609 -17.10195 -16.26030 -16.14270 -15.33751 -14.99990 -14.78682 -14.49261 -14.13732 -13.87067 -13.61506 -13.35219 -13.12511 -12.93430 -12.83714 -12.62258 -12.41462 -12.21250 -12.12835 -12.10323 -11.60989 -11.35894 -10.78214 -10.66600 -10.57364 -9.67180 -8.35804 -8.03087 -6.24378 0.05402 1.02936 1.34056 1.35969 1.48927 1.88184 2.40332 2.94570 3.13978 3.43771 3.53168 4.06910 4.32024 4.41988 4.45475 4.50637 4.54658 4.75742 4.78410 4.89119 4.92651 5.01386 5.08357 5.15877 5.21713 5.27025 5.38968 5.47949 5.49945 5.70115 5.86106 6.00294 6.26984 6.36579 6.81752 7.33871 7.37302 7.64474 8.94617 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.025537 B = 0.007165 C = 0.006400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.171129 B = 3906.924455 C = 4373.611894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.073 4.073 3 C 0.236 3.764 4 C -0.317 4.317 5 C 0.218 3.782 6 C -0.115 4.115 7 N -0.615 5.615 8 H 0.423 0.577 9 C 0.482 3.518 10 N -0.621 5.621 11 C 0.228 3.772 12 H 0.001 0.999 13 C -0.108 4.108 14 C -0.520 4.520 15 H 0.036 0.964 16 C 0.009 3.991 17 N -0.919 5.919 18 Si 0.966 3.034 19 H -0.275 1.275 20 H -0.271 1.271 21 H -0.274 1.274 22 N -0.586 5.586 23 H 0.084 0.916 24 H 0.051 0.949 25 H 0.020 0.980 26 H 0.082 0.918 27 H 0.127 0.873 28 H 0.190 0.810 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.089 0.911 32 H 0.023 0.977 33 H 0.008 0.992 34 H 0.065 0.935 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.848 -6.092 17.075 21.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 C 0.067 3.933 4 C -0.347 4.347 5 C 0.099 3.901 6 C -0.172 4.172 7 N -0.235 5.235 8 H 0.261 0.739 9 C 0.115 3.885 10 N -0.352 5.352 11 C 0.118 3.882 12 H 0.019 0.981 13 C -0.166 4.166 14 C -0.558 4.558 15 H 0.054 0.946 16 C -0.189 4.189 17 N -0.559 5.559 18 Si 0.791 3.209 19 H -0.200 1.200 20 H -0.196 1.196 21 H -0.199 1.199 22 N -0.308 5.308 23 H 0.102 0.898 24 H 0.070 0.930 25 H 0.040 0.960 26 H 0.101 0.899 27 H 0.146 0.854 28 H 0.207 0.793 29 H 0.127 0.873 30 H 0.141 0.859 31 H 0.108 0.892 32 H 0.042 0.958 33 H 0.027 0.973 34 H 0.084 0.916 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.164 -5.287 15.695 19.973 hybrid contribution -0.685 0.514 -0.088 0.860 sum 10.480 -4.773 15.607 19.396 Atomic orbital electron populations 1.21611 0.95047 1.02402 1.00766 1.20715 0.96098 0.89118 1.05122 1.22637 0.87190 0.96330 0.87171 1.21351 1.09463 0.97065 1.06785 1.21776 0.91110 0.89953 0.87242 1.21240 0.96636 1.04711 0.94565 1.42364 1.41624 1.15381 1.24166 0.73895 1.20434 0.89938 0.87369 0.90755 1.72463 1.21799 1.32631 1.08342 1.18644 0.88647 0.93993 0.86932 0.98124 1.21539 0.97030 0.97643 1.00415 1.21379 1.00377 1.17016 1.17071 0.94601 1.25780 1.01685 0.96605 0.94824 1.70048 1.33560 1.31612 1.20702 0.85398 0.78873 0.78505 0.78139 1.19963 1.19576 1.19903 1.69526 1.29739 1.02624 1.28920 0.89751 0.93007 0.96021 0.89924 0.85436 0.79322 0.87302 0.85861 0.89221 0.95818 0.97325 0.91590 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.05 9.77 71.98 0.70 -3.35 16 2 C -0.07 -1.80 6.35 29.85 0.19 -1.61 16 3 C 0.24 7.59 6.22 43.07 0.27 7.86 16 4 C -0.32 -7.01 9.32 22.13 0.21 -6.80 16 5 C 0.22 4.67 6.85 41.29 0.28 4.95 16 6 C -0.11 -0.96 10.15 71.24 0.72 -0.23 16 7 N -0.62 -19.56 5.41 -185.70 -1.01 -20.57 16 8 H 0.42 11.69 8.85 -92.71 -0.82 10.87 16 9 C 0.48 22.30 8.42 261.57 2.20 24.50 16 10 N -0.62 -34.54 10.25 -334.18 -3.43 -37.97 16 11 C 0.23 14.27 2.89 44.24 0.13 14.40 16 12 H 0.00 0.06 6.65 -2.38 -0.02 0.05 16 13 C -0.11 -6.45 9.29 71.98 0.67 -5.78 16 14 C -0.52 -34.04 8.84 25.60 0.23 -33.82 16 15 H 0.04 2.40 7.81 -2.91 -0.02 2.37 16 16 C 0.01 0.56 5.30 84.65 0.45 1.01 16 17 N -0.92 -58.54 11.32 21.45 0.24 -58.30 16 18 Si 0.97 48.42 29.54 68.60 2.03 50.44 16 19 H -0.27 -13.63 7.11 99.48 0.71 -12.92 16 20 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 21 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 22 N -0.59 -26.63 8.28 -185.61 -1.54 -28.16 16 23 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.02 0.83 7.96 -2.38 -0.02 0.81 16 26 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.13 1.84 7.91 -2.39 -0.02 1.83 16 28 H 0.19 2.22 7.98 -2.91 -0.02 2.19 16 29 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.12 0.39 8.09 -2.39 -0.02 0.37 16 31 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.02 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.07 4.14 6.07 -2.39 -0.01 4.13 16 35 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -87.78 296.16 2.61 -85.17 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 0.26 Total: 8.27 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 6.05 Total: 1.13 kcal Atomic # 7 Polarization: -139.28 SS G_CDS: -5.73 Total: -145.00 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 2.03 Total: 50.44 kcal Total: -87.78 2.61 -85.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379972526.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.099 kcal (2) G-P(sol) polarization free energy of solvation -87.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds