Wall clock time and date at job start Sun Mar 29 2020 22:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47178 * 2 1 4 4 H 1.09006 * 109.47367 * 184.45413 * 3 2 1 5 5 C 1.50699 * 109.47342 * 304.45717 * 3 2 1 6 6 H 1.08005 * 119.99608 * 115.14969 * 5 3 2 7 7 C 1.37876 * 120.00091 * 295.15089 * 5 3 2 8 8 N 1.31509 * 119.99886 * 352.96681 * 7 5 3 9 9 Si 1.86808 * 119.99969 * 172.97341 * 7 5 3 10 10 H 1.48497 * 109.47009 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47015 * 299.99946 * 9 7 5 12 12 H 1.48503 * 109.46963 * 60.00077 * 9 7 5 13 13 N 1.46905 * 109.47189 * 64.46023 * 3 2 1 14 14 C 1.46895 * 110.99963 * 85.29723 * 13 3 2 15 15 C 1.53004 * 109.46851 * 184.98622 * 14 13 3 16 16 C 1.50700 * 109.46753 * 180.02562 * 15 14 13 17 17 C 1.38393 * 120.00001 * 125.00121 * 16 15 14 18 18 N 1.32127 * 119.99701 * 179.97438 * 17 16 15 19 19 C 1.32157 * 119.99931 * 359.97438 * 18 17 16 20 20 C 1.38347 * 120.00465 * 359.97438 * 19 18 17 21 21 N 1.32124 * 120.00173 * 304.71414 * 16 15 14 22 22 H 1.09005 * 109.46821 * 305.53793 * 1 2 3 23 23 H 1.09001 * 109.47015 * 65.53736 * 1 2 3 24 24 H 1.08998 * 109.47541 * 185.53546 * 1 2 3 25 25 H 1.09004 * 109.46905 * 240.00483 * 2 1 3 26 26 H 1.08998 * 109.47090 * 120.00472 * 2 1 3 27 27 H 0.96998 * 120.00531 * 356.31746 * 8 7 5 28 28 H 1.00895 * 111.00045 * 209.25829 * 13 3 2 29 29 H 1.09004 * 109.47313 * 304.98302 * 14 13 3 30 30 H 1.09000 * 109.47146 * 64.98274 * 14 13 3 31 31 H 1.08997 * 109.47150 * 299.99607 * 15 14 13 32 32 H 1.09000 * 109.47530 * 59.99886 * 15 14 13 33 33 H 1.07996 * 120.00106 * 359.94531 * 17 16 15 34 34 H 1.07999 * 119.99715 * 180.02562 * 19 18 17 35 35 H 1.07990 * 120.00082 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1271 1.4435 -0.0798 5 6 1.4496 2.1841 -1.1715 6 1 0.7754 3.0109 -1.0029 7 6 1.7700 1.8071 -2.4584 8 7 2.6940 0.8945 -2.6655 9 14 0.8917 2.5928 -3.9079 10 1 1.4151 2.0194 -5.1738 11 1 -0.5655 2.3250 -3.8079 12 1 1.1277 4.0588 -3.8942 13 7 1.6403 2.1032 1.2497 14 6 2.6091 1.8343 2.3206 15 6 2.0978 2.4323 3.6328 16 6 3.0921 2.1570 4.7313 17 6 3.6044 3.2029 5.4790 18 7 4.4758 2.9614 6.4424 19 6 4.8577 1.7211 6.6924 20 6 4.3447 0.6755 5.9456 21 7 3.4704 0.9167 4.9844 22 1 -0.3633 0.5974 0.8363 23 1 -0.3633 0.4256 -0.9354 24 1 -0.3634 -1.0228 0.0991 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.1876 0.5254 -1.9166 28 1 1.5199 3.0954 1.1116 29 1 2.7336 0.7576 2.4361 30 1 3.5679 2.2855 2.0649 31 1 1.9734 3.5090 3.5174 32 1 1.1391 1.9812 3.8886 33 1 3.2924 4.2164 5.2747 34 1 5.5696 1.5237 7.4801 35 1 4.6571 -0.3379 6.1497 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389930223.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:23 Heat of formation + Delta-G solvation = 31.904282 kcal Electronic energy + Delta-G solvation = -16115.689974 eV Core-core repulsion = 13534.193809 eV Total energy + Delta-G solvation = -2581.496166 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.14869 -36.81647 -34.81642 -33.67075 -32.07552 -30.69807 -28.54038 -25.62943 -24.71095 -23.64715 -23.24489 -21.29263 -19.26073 -17.62026 -17.13071 -16.92146 -15.91605 -15.21955 -14.59829 -14.24678 -13.76862 -13.68145 -13.38199 -12.98748 -12.59799 -12.31539 -11.78678 -11.67305 -11.42032 -11.15498 -11.06959 -10.89193 -10.75498 -10.10271 -10.05674 -9.91409 -9.66529 -9.27866 -9.11055 -8.50060 -8.30952 -7.39375 -6.34430 -4.05205 0.66679 1.04161 3.43590 3.46125 3.59004 3.64207 3.95950 4.16598 4.35837 4.52407 4.66508 4.99542 5.11480 5.30101 5.38097 5.41355 5.53008 5.71972 5.86266 6.24417 6.30892 6.35014 6.46369 6.50715 6.65609 7.01443 7.10054 7.17566 7.31643 7.50015 7.58422 7.69712 7.88979 8.10567 8.51767 8.59120 8.87656 9.65284 11.02304 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.045028 B = 0.004775 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.679932 B = 5862.572597 C = 6028.610821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.105 4.105 3 C 0.205 3.795 4 H -0.009 1.009 5 C -0.594 4.594 6 H 0.053 0.947 7 C 0.024 3.976 8 N -0.910 5.910 9 Si 1.064 2.936 10 H -0.284 1.284 11 H -0.287 1.287 12 H -0.289 1.289 13 N -0.680 5.680 14 C 0.069 3.931 15 C -0.065 4.065 16 C 0.096 3.904 17 C 0.047 3.953 18 N -0.439 5.439 19 C 0.031 3.969 20 C 0.055 3.945 21 N -0.433 5.433 22 H 0.051 0.949 23 H 0.056 0.944 24 H 0.016 0.984 25 H 0.057 0.943 26 H 0.021 0.979 27 H 0.270 0.730 28 H 0.333 0.667 29 H 0.074 0.926 30 H 0.014 0.986 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.169 0.831 34 H 0.167 0.833 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.666 1.831 15.369 15.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.144 4.144 3 C 0.097 3.903 4 H 0.008 0.992 5 C -0.633 4.633 6 H 0.072 0.928 7 C -0.181 4.181 8 N -0.546 5.546 9 Si 0.893 3.107 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.216 1.216 13 N -0.311 5.311 14 C -0.061 4.061 15 C -0.104 4.104 16 C -0.044 4.044 17 C -0.113 4.113 18 N -0.153 5.153 19 C -0.128 4.128 20 C -0.105 4.105 21 N -0.149 5.149 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.035 0.965 25 H 0.075 0.925 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.150 0.850 29 H 0.092 0.908 30 H 0.032 0.968 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.186 0.814 34 H 0.184 0.816 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 1.129 1.284 13.897 14.002 hybrid contribution 1.027 0.496 1.510 1.892 sum 2.155 1.780 15.408 15.659 Atomic orbital electron populations 1.21414 0.96484 0.97479 1.02123 1.21475 0.96375 0.98222 0.98335 1.19215 0.93041 0.91790 0.86257 0.99192 1.21942 1.31090 1.18379 0.91852 0.92836 1.25694 0.96382 0.95936 1.00095 1.70783 1.21217 1.27003 1.35585 0.83612 0.75779 0.75464 0.75858 1.20897 1.21344 1.21603 1.60549 1.46641 1.15929 1.07932 1.21793 0.93232 1.00889 0.90199 1.20569 0.96520 1.01800 0.91531 1.22473 0.96201 0.89387 0.96367 1.23665 0.94193 1.00975 0.92456 1.68417 1.09506 1.22528 1.14851 1.23706 0.99786 0.89154 1.00155 1.23817 0.93480 1.01305 0.91940 1.68341 1.09849 1.22203 1.14473 0.93034 0.92516 0.96530 0.92474 0.96076 0.91860 0.85017 0.90760 0.96761 0.90124 0.88778 0.81426 0.81606 0.81472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 9.43 37.16 0.35 -2.29 16 2 C -0.11 -2.53 5.51 -26.73 -0.15 -2.68 16 3 C 0.21 5.08 1.93 -68.86 -0.13 4.94 16 4 H -0.01 -0.26 7.22 -51.93 -0.37 -0.63 16 5 C -0.59 -16.02 7.13 -34.44 -0.25 -16.26 16 6 H 0.05 1.44 7.67 -52.48 -0.40 1.03 16 7 C 0.02 0.66 5.26 -17.82 -0.09 0.56 16 8 N -0.91 -26.92 12.94 55.43 0.72 -26.20 16 9 Si 1.06 24.77 29.91 -169.99 -5.08 19.69 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 13 N -0.68 -14.02 5.62 -107.95 -0.61 -14.63 16 14 C 0.07 1.24 5.32 -3.82 -0.02 1.22 16 15 C -0.07 -0.90 5.93 -27.88 -0.17 -1.07 16 16 C 0.10 1.30 6.17 -82.41 -0.51 0.79 16 17 C 0.05 0.57 10.85 -17.37 -0.19 0.38 16 18 N -0.44 -5.39 10.50 -13.06 -0.14 -5.52 16 19 C 0.03 0.32 11.22 -17.37 -0.19 0.12 16 20 C 0.05 0.59 11.23 -17.37 -0.19 0.40 16 21 N -0.43 -6.12 10.06 -9.29 -0.09 -6.21 16 22 H 0.05 1.11 7.59 -51.93 -0.39 0.72 16 23 H 0.06 1.37 7.31 -51.93 -0.38 0.99 16 24 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 1.49 6.35 -51.93 -0.33 1.16 16 26 H 0.02 0.47 7.33 -51.93 -0.38 0.09 16 27 H 0.27 8.03 6.03 -40.82 -0.25 7.78 16 28 H 0.33 6.67 8.30 -39.29 -0.33 6.35 16 29 H 0.07 1.45 7.13 -51.93 -0.37 1.08 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.94 7.89 -51.93 -0.41 0.54 16 32 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.17 1.57 7.95 -52.49 -0.42 1.15 16 34 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.17 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 291.64 15.07 4.39 4.39 Total: -1.00 -31.02 291.64 -7.29 -38.31 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -4.94 Total: 4.05 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -1.54 Total: -13.88 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.12 Total: -52.57 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.08 Total: 19.69 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.02 -7.29 -38.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389930223.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.216 kcal (2) G-P(sol) polarization free energy of solvation -31.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds