Wall clock time and date at job start Sun Mar 29 2020 22:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47178 * 2 1 4 4 H 1.09006 * 109.47367 * 184.45413 * 3 2 1 5 5 C 1.50699 * 109.47342 * 304.45717 * 3 2 1 6 6 H 1.08005 * 119.99608 * 115.14969 * 5 3 2 7 7 C 1.37876 * 120.00091 * 295.15089 * 5 3 2 8 8 N 1.31509 * 119.99886 * 352.96681 * 7 5 3 9 9 Si 1.86808 * 119.99969 * 172.97341 * 7 5 3 10 10 H 1.48497 * 109.47009 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47015 * 299.99946 * 9 7 5 12 12 H 1.48503 * 109.46963 * 60.00077 * 9 7 5 13 13 N 1.46905 * 109.47189 * 64.46023 * 3 2 1 14 14 C 1.46895 * 110.99963 * 85.29723 * 13 3 2 15 15 C 1.53004 * 109.46851 * 184.98622 * 14 13 3 16 16 C 1.50700 * 109.46753 * 180.02562 * 15 14 13 17 17 C 1.38393 * 120.00001 * 125.00121 * 16 15 14 18 18 N 1.32127 * 119.99701 * 179.97438 * 17 16 15 19 19 C 1.32157 * 119.99931 * 359.97438 * 18 17 16 20 20 C 1.38347 * 120.00465 * 359.97438 * 19 18 17 21 21 N 1.32124 * 120.00173 * 304.71414 * 16 15 14 22 22 H 1.09005 * 109.46821 * 305.53793 * 1 2 3 23 23 H 1.09001 * 109.47015 * 65.53736 * 1 2 3 24 24 H 1.08998 * 109.47541 * 185.53546 * 1 2 3 25 25 H 1.09004 * 109.46905 * 240.00483 * 2 1 3 26 26 H 1.08998 * 109.47090 * 120.00472 * 2 1 3 27 27 H 0.96998 * 120.00531 * 356.31746 * 8 7 5 28 28 H 1.00895 * 111.00045 * 209.25829 * 13 3 2 29 29 H 1.09004 * 109.47313 * 304.98302 * 14 13 3 30 30 H 1.09000 * 109.47146 * 64.98274 * 14 13 3 31 31 H 1.08997 * 109.47150 * 299.99607 * 15 14 13 32 32 H 1.09000 * 109.47530 * 59.99886 * 15 14 13 33 33 H 1.07996 * 120.00106 * 359.94531 * 17 16 15 34 34 H 1.07999 * 119.99715 * 180.02562 * 19 18 17 35 35 H 1.07990 * 120.00082 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1271 1.4435 -0.0798 5 6 1.4496 2.1841 -1.1715 6 1 0.7754 3.0109 -1.0029 7 6 1.7700 1.8071 -2.4584 8 7 2.6940 0.8945 -2.6655 9 14 0.8917 2.5928 -3.9079 10 1 1.4151 2.0194 -5.1738 11 1 -0.5655 2.3250 -3.8079 12 1 1.1277 4.0588 -3.8942 13 7 1.6403 2.1032 1.2497 14 6 2.6091 1.8343 2.3206 15 6 2.0978 2.4323 3.6328 16 6 3.0921 2.1570 4.7313 17 6 3.6044 3.2029 5.4790 18 7 4.4758 2.9614 6.4424 19 6 4.8577 1.7211 6.6924 20 6 4.3447 0.6755 5.9456 21 7 3.4704 0.9167 4.9844 22 1 -0.3633 0.5974 0.8363 23 1 -0.3633 0.4256 -0.9354 24 1 -0.3634 -1.0228 0.0991 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.1876 0.5254 -1.9166 28 1 1.5199 3.0954 1.1116 29 1 2.7336 0.7576 2.4361 30 1 3.5679 2.2855 2.0649 31 1 1.9734 3.5090 3.5174 32 1 1.1391 1.9812 3.8886 33 1 3.2924 4.2164 5.2747 34 1 5.5696 1.5237 7.4801 35 1 4.6571 -0.3379 6.1497 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389930223.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:23 Heat of formation + Delta-G solvation = 10.426729 kcal Electronic energy + Delta-G solvation = -16116.621311 eV Core-core repulsion = 13534.193809 eV Total energy + Delta-G solvation = -2582.427502 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.04237 -38.58383 -36.07977 -34.90565 -33.62315 -32.41909 -29.88346 -27.38830 -25.72042 -25.45662 -24.60860 -22.57276 -21.20050 -18.97819 -18.54950 -17.86591 -16.90592 -16.65366 -16.11657 -15.66660 -15.56860 -15.28877 -14.63058 -14.51615 -14.13976 -13.71715 -13.22258 -13.14185 -12.92648 -12.61853 -12.57381 -12.38419 -12.15425 -11.94053 -11.83766 -11.76222 -11.58165 -10.57743 -10.42825 -10.16643 -10.01410 -9.17452 -8.56047 -6.27187 -0.19692 0.14037 1.56249 1.63484 1.82004 2.59555 2.70345 3.07269 3.23558 3.35065 3.42194 3.62337 3.95843 4.05248 4.29662 4.37214 4.38773 4.46219 4.56143 4.58353 4.64147 4.75450 4.97302 5.03724 5.11789 5.22151 5.39930 5.43235 5.53091 5.69822 5.90460 6.09797 6.31032 6.48689 6.60578 6.81871 6.83977 7.52374 8.80505 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.045028 B = 0.004775 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.679932 B = 5862.572597 C = 6028.610821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.100 4.100 3 C 0.208 3.792 4 H -0.047 1.047 5 C -0.596 4.596 6 H 0.055 0.945 7 C -0.025 4.025 8 N -0.936 5.936 9 Si 1.110 2.890 10 H -0.290 1.290 11 H -0.271 1.271 12 H -0.271 1.271 13 N -0.672 5.672 14 C 0.078 3.922 15 C -0.051 4.051 16 C 0.075 3.925 17 C 0.046 3.954 18 N -0.459 5.459 19 C 0.042 3.958 20 C 0.049 3.951 21 N -0.469 5.469 22 H 0.059 0.941 23 H 0.036 0.964 24 H 0.039 0.961 25 H 0.029 0.971 26 H 0.030 0.970 27 H 0.256 0.744 28 H 0.337 0.663 29 H 0.054 0.946 30 H 0.001 0.999 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.190 0.810 34 H 0.205 0.795 35 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.085 2.599 16.786 17.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.139 4.139 3 C 0.099 3.901 4 H -0.029 1.029 5 C -0.635 4.635 6 H 0.073 0.927 7 C -0.224 4.224 8 N -0.574 5.574 9 Si 0.932 3.068 10 H -0.215 1.215 11 H -0.196 1.196 12 H -0.196 1.196 13 N -0.303 5.303 14 C -0.053 4.053 15 C -0.090 4.090 16 C -0.065 4.065 17 C -0.112 4.112 18 N -0.173 5.173 19 C -0.118 4.118 20 C -0.111 4.111 21 N -0.185 5.185 22 H 0.078 0.922 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.155 0.845 29 H 0.073 0.927 30 H 0.020 0.980 31 H 0.122 0.878 32 H 0.110 0.890 33 H 0.207 0.793 34 H 0.221 0.779 35 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 0.532 2.076 15.343 15.492 hybrid contribution 1.299 0.208 1.199 1.780 sum 1.831 2.285 16.542 16.799 Atomic orbital electron populations 1.21296 0.94806 0.99015 1.01294 1.21372 0.97713 0.97452 0.97392 1.19053 0.90691 0.92616 0.87740 1.02911 1.22225 1.30409 1.18211 0.92624 0.92664 1.27057 0.96315 0.95763 1.03252 1.70904 1.22734 1.28751 1.34969 0.83022 0.75530 0.75612 0.72600 1.21540 1.19621 1.19626 1.60483 1.47140 1.15967 1.06668 1.21711 0.92277 0.99927 0.91347 1.20393 0.96431 1.02846 0.89329 1.22369 0.97139 0.89898 0.97104 1.23943 0.93727 1.01571 0.92003 1.68505 1.09977 1.23643 1.15188 1.24343 0.99150 0.88244 1.00065 1.24366 0.92604 1.03102 0.91042 1.68277 1.11262 1.22910 1.16017 0.92197 0.94488 0.94168 0.95211 0.95164 0.93402 0.84497 0.92707 0.98035 0.87752 0.88992 0.79266 0.77859 0.78520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.70 9.43 71.98 0.68 -4.02 16 2 C -0.10 -4.90 5.51 30.59 0.17 -4.73 16 3 C 0.21 10.51 1.93 44.17 0.09 10.59 16 4 H -0.05 -2.66 7.22 -2.38 -0.02 -2.68 16 5 C -0.60 -32.32 7.13 25.60 0.18 -32.13 16 6 H 0.06 2.93 7.67 -2.91 -0.02 2.91 16 7 C -0.03 -1.41 5.26 84.66 0.45 -0.97 16 8 N -0.94 -56.75 12.94 21.45 0.28 -56.47 16 9 Si 1.11 49.51 29.91 68.60 2.05 51.56 16 10 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 12 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 13 N -0.67 -27.66 5.62 -495.44 -2.78 -30.44 16 14 C 0.08 2.79 5.32 86.31 0.46 3.25 16 15 C -0.05 -1.37 5.93 29.85 0.18 -1.19 16 16 C 0.07 1.94 6.17 42.55 0.26 2.20 16 17 C 0.05 1.04 10.85 84.69 0.92 1.96 16 18 N -0.46 -10.28 10.50 -195.22 -2.05 -12.33 16 19 C 0.04 0.74 11.22 84.67 0.95 1.69 16 20 C 0.05 0.97 11.23 84.67 0.95 1.92 16 21 N -0.47 -12.84 10.06 -183.29 -1.84 -14.68 16 22 H 0.06 2.51 7.59 -2.38 -0.02 2.49 16 23 H 0.04 1.75 7.31 -2.39 -0.02 1.73 16 24 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.03 1.59 6.35 -2.38 -0.02 1.58 16 26 H 0.03 1.38 7.33 -2.39 -0.02 1.36 16 27 H 0.26 15.87 6.03 -92.71 -0.56 15.31 16 28 H 0.34 13.33 8.30 -89.70 -0.74 12.58 16 29 H 0.05 2.18 7.13 -2.39 -0.02 2.16 16 30 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.10 2.25 7.89 -2.39 -0.02 2.23 16 32 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.19 3.14 7.95 -2.91 -0.02 3.11 16 34 H 0.20 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.20 2.46 8.06 -2.92 -0.02 2.43 16 Total: -1.00 -67.72 291.64 1.48 -66.25 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.55 Total: 17.55 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: 5.28 Total: -21.44 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -6.40 Total: -113.92 kcal Atomic # 14 Polarization: 49.51 SS G_CDS: 2.05 Total: 51.56 kcal Total: -67.72 1.48 -66.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389930223.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.672 kcal (2) G-P(sol) polarization free energy of solvation -67.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds