Wall clock time and date at job start Sun Mar 29 2020 22:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47506 * 2 1 4 4 H 1.09000 * 109.47285 * 54.81789 * 3 2 1 5 5 C 1.50698 * 109.47648 * 174.82201 * 3 2 1 6 6 H 1.07993 * 120.00547 * 119.99954 * 5 3 2 7 7 C 1.37883 * 119.99779 * 299.99562 * 5 3 2 8 8 N 1.31515 * 119.99971 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00058 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47114 * 90.00333 * 9 7 5 11 11 H 1.48501 * 109.47094 * 210.00630 * 9 7 5 12 12 H 1.48502 * 109.47142 * 330.00616 * 9 7 5 13 13 N 1.46907 * 109.47095 * 294.82327 * 3 2 1 14 14 C 1.46896 * 111.00413 * 153.89834 * 13 3 2 15 15 H 1.09004 * 110.42610 * 32.08428 * 14 13 3 16 16 C 1.54533 * 110.48276 * 154.60720 * 14 13 3 17 17 C 1.54383 * 101.77282 * 93.50699 * 16 14 13 18 18 N 1.47012 * 105.53460 * 25.70833 * 17 16 14 19 19 C 1.37193 * 141.60087 * 162.96668 * 18 17 16 20 20 C 1.34562 * 106.83462 * 179.79512 * 19 18 17 21 21 N 1.34003 * 108.03190 * 0.05734 * 20 19 18 22 22 C 1.30906 * 109.30285 * 0.07639 * 21 20 19 23 23 H 1.08997 * 109.47125 * 296.33143 * 1 2 3 24 24 H 1.09007 * 109.46852 * 56.32744 * 1 2 3 25 25 H 1.08993 * 109.47445 * 176.32210 * 1 2 3 26 26 H 1.08999 * 109.47670 * 239.99727 * 2 1 3 27 27 H 1.08999 * 109.46759 * 119.99665 * 2 1 3 28 28 H 0.96993 * 120.00125 * 180.02562 * 8 7 5 29 29 H 1.00900 * 110.99489 * 277.84526 * 13 3 2 30 30 H 1.09000 * 110.97097 * 211.62978 * 16 14 13 31 31 H 1.09005 * 110.96211 * 335.34887 * 16 14 13 32 32 H 1.08999 * 110.23648 * 144.72813 * 17 16 14 33 33 H 1.09010 * 110.23483 * 266.69435 * 17 16 14 34 34 H 1.07999 * 126.58049 * 359.77273 * 19 18 17 35 35 H 1.08003 * 125.98381 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6030 1.9824 0.8399 5 6 3.5416 1.4444 0.1282 6 1 4.1492 1.8881 -0.6465 7 6 4.1397 0.8797 1.2348 8 7 3.3998 0.3389 2.1781 9 14 6.0009 0.8814 1.3935 10 1 6.4366 2.1150 2.0959 11 1 6.4327 -0.3088 2.1694 12 1 6.6130 0.8395 0.0412 13 7 1.6551 2.0979 -1.2571 14 6 1.5504 3.5526 -1.0818 15 1 2.2661 3.8984 -0.3357 16 6 1.7795 4.2773 -2.4273 17 6 0.3354 4.4352 -2.9499 18 7 -0.5187 4.4339 -1.7533 19 6 -1.7813 4.7679 -1.3332 20 6 -1.8505 4.4612 -0.0249 21 7 -0.6661 3.9559 0.3460 22 6 0.1392 3.9387 -0.6859 23 1 -0.3633 0.4558 0.9210 24 1 -0.3633 0.5698 -0.8553 25 1 -0.3634 -1.0255 -0.0659 26 1 1.8934 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 3.8205 -0.0580 2.9567 29 1 2.3015 1.8686 -1.9971 30 1 2.2466 5.2498 -2.2720 31 1 2.3751 3.6644 -3.1039 32 1 0.2299 5.3775 -3.4875 33 1 0.0759 3.5989 -3.5992 34 1 -2.5684 5.1952 -1.9367 35 1 -2.7100 4.5987 0.6145 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393526442.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:54 Heat of formation + Delta-G solvation = 72.389983 kcal Electronic energy + Delta-G solvation = -17054.308923 eV Core-core repulsion = 14474.568349 eV Total energy + Delta-G solvation = -2579.740574 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.94253 -37.00027 -35.03700 -32.36343 -31.23125 -29.54919 -28.23177 -26.64621 -25.03670 -22.58965 -21.70182 -20.65410 -19.44169 -19.17359 -16.56263 -16.37171 -15.83425 -14.74769 -14.21027 -14.08029 -13.76264 -13.49173 -13.11497 -12.88673 -12.60766 -12.20549 -11.93625 -11.46898 -11.32338 -11.15054 -10.87310 -10.78407 -10.64668 -10.13945 -9.52713 -9.44251 -9.33339 -9.15096 -9.03846 -8.33260 -7.94290 -7.39498 -5.96359 -4.10018 2.48200 3.10445 3.28479 3.35997 3.36903 3.65638 4.28983 4.41496 4.77803 4.88436 4.90257 5.21007 5.29843 5.40347 5.54978 5.77937 5.90438 5.95952 6.06454 6.31762 6.49985 6.63119 6.74621 6.82259 7.21165 7.28204 7.29610 7.43474 7.50467 7.63992 7.81207 8.04915 8.14475 8.32550 8.62962 8.68501 9.01273 9.57263 11.04409 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.030069 B = 0.007750 C = 0.007047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.981222 B = 3612.156923 C = 3972.095492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.103 4.103 3 C 0.216 3.784 4 H 0.044 0.956 5 C -0.550 4.550 6 H 0.053 0.947 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.675 5.675 14 C 0.164 3.836 15 H 0.081 0.919 16 C -0.133 4.133 17 C 0.113 3.887 18 N -0.483 5.483 19 C -0.058 4.058 20 C -0.025 4.025 21 N -0.478 5.478 22 C 0.232 3.768 23 H 0.039 0.961 24 H 0.044 0.956 25 H 0.021 0.979 26 H 0.027 0.973 27 H 0.091 0.909 28 H 0.262 0.738 29 H 0.334 0.666 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.163 0.837 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.433 7.548 -9.923 13.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.141 4.141 3 C 0.109 3.891 4 H 0.062 0.938 5 C -0.589 4.589 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.517 5.517 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.307 5.307 14 C 0.051 3.949 15 H 0.099 0.901 16 C -0.172 4.172 17 C -0.009 4.009 18 N -0.167 5.167 19 C -0.190 4.190 20 C -0.174 4.174 21 N -0.196 5.196 22 C -0.033 4.033 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.040 0.960 26 H 0.046 0.954 27 H 0.109 0.891 28 H 0.072 0.928 29 H 0.153 0.847 30 H 0.103 0.897 31 H 0.119 0.881 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.181 0.819 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.976 7.140 -9.084 13.008 hybrid contribution 1.508 0.481 -0.599 1.692 sum -4.468 7.621 -9.683 13.107 Atomic orbital electron populations 1.21660 0.98902 0.97955 1.00618 1.21462 0.92151 0.99065 1.01446 1.19239 0.92735 0.91366 0.85791 0.93832 1.21825 0.92552 1.38859 1.05686 0.92845 1.24927 0.97819 0.94978 0.95703 1.69890 1.34770 1.37818 1.09239 0.86664 0.86111 0.77563 0.78015 1.20763 1.21186 1.20069 1.60776 1.55069 1.03594 1.11271 1.20290 0.87966 0.91552 0.95046 0.90139 1.22944 0.94723 1.02119 0.97387 1.22232 0.89678 1.02741 0.86235 1.46484 1.10900 1.47452 1.11834 1.22166 0.87422 1.12103 0.97270 1.22261 0.96933 1.05147 0.93058 1.69941 1.01376 1.19794 1.28484 1.24451 0.96435 0.99091 0.83305 0.94185 0.93719 0.95971 0.95383 0.89124 0.92829 0.84733 0.89673 0.88098 0.90168 0.89437 0.81922 0.81586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.84 37.16 0.37 -2.64 16 2 C -0.10 -2.53 5.45 -26.73 -0.15 -2.67 16 3 C 0.22 5.37 1.83 -68.86 -0.13 5.24 16 4 H 0.04 1.26 7.84 -51.93 -0.41 0.86 16 5 C -0.55 -14.51 8.36 -34.44 -0.29 -14.80 16 6 H 0.05 1.36 7.72 -52.49 -0.41 0.95 16 7 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 8 N -0.88 -25.14 11.29 55.43 0.63 -24.51 16 9 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.68 -13.68 5.50 -100.87 -0.56 -14.23 16 14 C 0.16 3.02 3.01 -67.63 -0.20 2.82 16 15 H 0.08 1.67 7.72 -51.93 -0.40 1.27 16 16 C -0.13 -1.68 6.83 -25.20 -0.17 -1.85 16 17 C 0.11 1.35 7.78 -3.04 -0.02 1.33 16 18 N -0.48 -7.72 3.61 -112.28 -0.41 -8.12 16 19 C -0.06 -0.87 12.04 -16.45 -0.20 -1.07 16 20 C -0.03 -0.43 11.86 -17.90 -0.21 -0.64 16 21 N -0.48 -10.23 11.26 -10.56 -0.12 -10.35 16 22 C 0.23 4.55 8.20 -154.86 -1.27 3.28 16 23 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.04 0.99 7.66 -51.92 -0.40 0.59 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.09 2.49 5.95 -51.93 -0.31 2.18 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.33 6.26 7.71 -39.29 -0.30 5.96 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.10 1.09 7.56 -51.93 -0.39 0.70 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 0.99 8.14 -51.92 -0.42 0.56 16 34 H 0.16 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.17 2.32 8.06 -52.48 -0.42 1.90 16 LS Contribution 288.45 15.07 4.35 4.35 Total: -1.00 -31.35 288.45 -8.63 -39.98 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.13 Total: 6.23 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -2.37 Total: -9.23 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.45 Total: -57.22 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.35 -8.63 -39.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393526442.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.367 kcal (2) G-P(sol) polarization free energy of solvation -31.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds