Wall clock time and date at job start Sun Mar 29 2020 22:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47226 * 2 1 4 4 C 1.52992 * 109.47223 * 239.99863 * 2 1 3 5 5 C 1.50699 * 109.46986 * 119.99656 * 2 1 3 6 6 N 1.30409 * 119.29552 * 255.02513 * 5 2 1 7 7 C 1.33779 * 122.03185 * 180.02562 * 6 5 2 8 8 C 1.35634 * 120.41226 * 359.97438 * 7 6 5 9 9 C 1.41989 * 118.60214 * 359.97438 * 8 7 6 10 10 N 1.31473 * 120.91692 * 180.29421 * 9 8 7 11 11 C 1.46500 * 120.00458 * 353.29785 * 10 9 8 12 12 C 1.50694 * 109.47363 * 114.19213 * 11 10 9 13 13 H 1.08001 * 120.00447 * 0.02562 * 12 11 10 14 14 C 1.37886 * 120.00027 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99953 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99898 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46982 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.46991 * 120.00134 * 16 14 12 19 19 H 1.48498 * 109.46848 * 240.00003 * 16 14 12 20 20 N 1.35659 * 119.29178 * 75.00237 * 5 2 1 21 21 H 0.97004 * 120.30832 * 359.97438 * 20 5 2 22 22 H 1.09007 * 109.47496 * 300.00462 * 1 2 3 23 23 H 1.08997 * 109.47276 * 60.00244 * 1 2 3 24 24 H 1.09001 * 109.47305 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47542 * 180.02562 * 3 2 1 26 26 H 1.09007 * 109.47302 * 300.00086 * 3 2 1 27 27 H 1.09007 * 109.47260 * 59.99394 * 3 2 1 28 28 H 1.09001 * 109.47476 * 299.99943 * 4 2 1 29 29 H 1.08997 * 109.47523 * 60.00077 * 4 2 1 30 30 H 1.09006 * 109.47109 * 180.02562 * 4 2 1 31 31 H 1.08000 * 119.78828 * 179.97438 * 7 6 5 32 32 H 1.08001 * 120.70293 * 180.02562 * 8 7 6 33 33 H 1.09004 * 109.47366 * 234.19506 * 11 10 9 34 34 H 1.09002 * 109.46888 * 354.19322 * 11 10 9 35 35 H 0.97000 * 119.99738 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 2.0323 -0.7103 1.2305 6 7 2.5220 -0.0106 2.2160 7 6 2.9834 -0.5843 3.3330 8 6 2.9540 -1.9329 3.4748 9 6 2.4243 -2.7164 2.4157 10 7 2.3686 -4.0267 2.5073 11 6 2.9884 -4.7085 3.6462 12 6 1.9191 -5.3625 4.4828 13 1 0.8816 -5.2791 4.1948 14 6 2.2654 -6.0675 5.6161 15 7 3.5287 -6.1687 5.9673 16 14 0.9398 -6.8776 6.6535 17 1 -0.3910 -6.6157 6.0489 18 1 1.1799 -8.3420 6.7080 19 1 0.9769 -6.3184 8.0287 20 7 1.9648 -2.0640 1.2895 21 1 1.5967 -2.5686 0.5473 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 3.1299 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6767 -1.7489 -1.2492 29 1 1.6767 -0.2075 -2.1392 30 1 3.1300 -0.7216 -1.2489 31 1 3.3818 0.0303 4.1267 32 1 3.3249 -2.4010 4.3747 33 1 3.6804 -5.4681 3.2824 34 1 3.5311 -3.9832 4.2525 35 1 3.7723 -6.6650 6.7643 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393773232.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:17 Heat of formation + Delta-G solvation = 50.294972 kcal Electronic energy + Delta-G solvation = -16339.968402 eV Core-core repulsion = 13759.269717 eV Total energy + Delta-G solvation = -2580.698685 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.68586 -36.98504 -34.89351 -33.55348 -32.23782 -29.58453 -27.58108 -27.47302 -26.58290 -24.35887 -23.23401 -21.42797 -19.08698 -18.00729 -16.86586 -16.24039 -15.73735 -14.96937 -14.79512 -14.47776 -14.04913 -13.77974 -13.28637 -12.70846 -12.55189 -12.35612 -12.20911 -11.86165 -11.77943 -11.35870 -11.20999 -11.05832 -11.02994 -10.77234 -10.71261 -10.12457 -9.96482 -9.42159 -9.16414 -8.59877 -8.01403 -6.79116 -6.01618 -4.06913 1.30375 2.62186 3.14126 3.29697 3.36575 3.42961 4.08261 4.19189 4.45605 4.56282 4.75046 4.92358 5.15657 5.29406 5.35777 5.47344 5.51884 5.54093 5.66153 5.73015 5.77510 5.87419 5.91440 6.05215 6.07599 6.28020 6.46174 6.70745 7.04345 7.44562 7.55262 7.66747 7.92097 8.30278 8.42874 8.89640 9.12761 9.58297 11.05255 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.043548 B = 0.005285 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.813576 B = 5296.585814 C = 5435.959646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.016 4.016 3 C -0.122 4.122 4 C -0.148 4.148 5 C 0.403 3.597 6 N -0.558 5.558 7 C 0.092 3.908 8 C -0.229 4.229 9 C 0.348 3.652 10 N -0.570 5.570 11 C 0.193 3.807 12 C -0.507 4.507 13 H 0.059 0.941 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.900 3.100 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.283 1.283 20 N -0.619 5.619 21 H 0.410 0.590 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.149 0.851 32 H 0.152 0.848 33 H 0.040 0.960 34 H 0.009 0.991 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.325 14.673 -12.549 19.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.019 4.019 3 C -0.180 4.180 4 C -0.206 4.206 5 C 0.135 3.865 6 N -0.283 5.283 7 C -0.043 4.043 8 C -0.255 4.255 9 C 0.076 3.924 10 N -0.293 5.293 11 C 0.065 3.935 12 C -0.546 4.546 13 H 0.077 0.923 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.728 3.272 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.209 1.209 20 N -0.245 5.245 21 H 0.248 0.752 22 H 0.083 0.917 23 H 0.089 0.911 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.166 0.834 32 H 0.170 0.830 33 H 0.058 0.942 34 H 0.027 0.973 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.327 14.525 -12.527 19.467 hybrid contribution -0.411 -1.320 1.289 1.890 sum -3.739 13.205 -11.237 17.738 Atomic orbital electron populations 1.21918 0.92354 1.02711 1.03045 1.19659 0.96410 0.96540 0.89267 1.21646 1.01629 0.92589 1.02119 1.21985 1.02023 1.00297 0.96328 1.22715 0.89160 0.79937 0.94723 1.67900 1.21144 1.37022 1.02213 1.21991 0.95346 0.92862 0.94078 1.22705 1.06291 0.94931 1.01609 1.18918 0.95651 0.91721 0.86155 1.72181 1.22034 1.04560 1.30548 1.19758 0.94533 0.93266 0.85924 1.21183 0.93503 1.32336 1.07573 0.92263 1.24996 0.95650 0.96394 0.97490 1.69963 1.15940 1.42113 1.25675 0.86402 0.81838 0.79088 0.79901 1.19757 1.20837 1.20927 1.42583 1.57662 1.06111 1.18110 0.75216 0.91662 0.91087 0.92211 0.92082 0.92481 0.90984 0.92205 0.90894 0.91735 0.83361 0.83027 0.94187 0.97332 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.46 37.16 0.31 -0.92 16 2 C -0.02 -0.16 0.93 -155.67 -0.15 -0.31 16 3 C -0.12 -1.10 7.80 37.16 0.29 -0.81 16 4 C -0.15 -1.21 8.21 37.15 0.31 -0.91 16 5 C 0.40 5.72 6.37 -154.93 -0.99 4.73 16 6 N -0.56 -8.76 8.98 -10.55 -0.09 -8.85 16 7 C 0.09 1.55 11.16 -17.63 -0.20 1.36 16 8 C -0.23 -4.61 9.24 -39.08 -0.36 -4.98 16 9 C 0.35 7.35 7.72 -155.65 -1.20 6.15 16 10 N -0.57 -14.19 10.66 -61.24 -0.65 -14.85 16 11 C 0.19 5.43 5.95 -5.20 -0.03 5.40 16 12 C -0.51 -15.22 9.39 -34.44 -0.32 -15.54 16 13 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 16 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 16 17 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 N -0.62 -10.07 5.23 -9.30 -0.05 -10.12 16 21 H 0.41 5.82 7.39 -40.82 -0.30 5.52 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 27 H 0.07 0.72 7.84 -51.93 -0.41 0.31 16 28 H 0.06 0.48 6.85 -51.93 -0.36 0.13 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.15 2.10 8.06 -52.49 -0.42 1.67 16 32 H 0.15 3.32 5.91 -52.49 -0.31 3.00 16 33 H 0.04 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.01 0.25 5.32 -51.93 -0.28 -0.02 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 292.33 15.07 4.41 4.41 Total: -1.00 -33.46 292.33 -8.11 -41.57 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.00 Total: 1.27 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -2.43 Total: -4.27 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -0.06 Total: -60.28 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.46 -8.11 -41.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393773232.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.862 kcal (2) G-P(sol) polarization free energy of solvation -33.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds