Wall clock time and date at job start Sun Mar 29 2020 22:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47226 * 2 1 4 4 C 1.52992 * 109.47223 * 239.99863 * 2 1 3 5 5 C 1.50699 * 109.46986 * 119.99656 * 2 1 3 6 6 N 1.30409 * 119.29552 * 255.02513 * 5 2 1 7 7 C 1.33779 * 122.03185 * 180.02562 * 6 5 2 8 8 C 1.35634 * 120.41226 * 359.97438 * 7 6 5 9 9 C 1.41989 * 118.60214 * 359.97438 * 8 7 6 10 10 N 1.31473 * 120.91692 * 180.29421 * 9 8 7 11 11 C 1.46500 * 120.00458 * 353.29785 * 10 9 8 12 12 C 1.50694 * 109.47363 * 114.19213 * 11 10 9 13 13 H 1.08001 * 120.00447 * 0.02562 * 12 11 10 14 14 C 1.37886 * 120.00027 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99953 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99898 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46982 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.46991 * 120.00134 * 16 14 12 19 19 H 1.48498 * 109.46848 * 240.00003 * 16 14 12 20 20 N 1.35659 * 119.29178 * 75.00237 * 5 2 1 21 21 H 0.97004 * 120.30832 * 359.97438 * 20 5 2 22 22 H 1.09007 * 109.47496 * 300.00462 * 1 2 3 23 23 H 1.08997 * 109.47276 * 60.00244 * 1 2 3 24 24 H 1.09001 * 109.47305 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47542 * 180.02562 * 3 2 1 26 26 H 1.09007 * 109.47302 * 300.00086 * 3 2 1 27 27 H 1.09007 * 109.47260 * 59.99394 * 3 2 1 28 28 H 1.09001 * 109.47476 * 299.99943 * 4 2 1 29 29 H 1.08997 * 109.47523 * 60.00077 * 4 2 1 30 30 H 1.09006 * 109.47109 * 180.02562 * 4 2 1 31 31 H 1.08000 * 119.78828 * 179.97438 * 7 6 5 32 32 H 1.08001 * 120.70293 * 180.02562 * 8 7 6 33 33 H 1.09004 * 109.47366 * 234.19506 * 11 10 9 34 34 H 1.09002 * 109.46888 * 354.19322 * 11 10 9 35 35 H 0.97000 * 119.99738 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 2.0323 -0.7103 1.2305 6 7 2.5220 -0.0106 2.2160 7 6 2.9834 -0.5843 3.3330 8 6 2.9540 -1.9329 3.4748 9 6 2.4243 -2.7164 2.4157 10 7 2.3686 -4.0267 2.5073 11 6 2.9884 -4.7085 3.6462 12 6 1.9191 -5.3625 4.4828 13 1 0.8816 -5.2791 4.1948 14 6 2.2654 -6.0675 5.6161 15 7 3.5287 -6.1687 5.9673 16 14 0.9398 -6.8776 6.6535 17 1 -0.3910 -6.6157 6.0489 18 1 1.1799 -8.3420 6.7080 19 1 0.9769 -6.3184 8.0287 20 7 1.9648 -2.0640 1.2895 21 1 1.5967 -2.5686 0.5473 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 3.1299 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6767 -1.7489 -1.2492 29 1 1.6767 -0.2075 -2.1392 30 1 3.1300 -0.7216 -1.2489 31 1 3.3818 0.0303 4.1267 32 1 3.3249 -2.4010 4.3747 33 1 3.6804 -5.4681 3.2824 34 1 3.5311 -3.9832 4.2525 35 1 3.7723 -6.6650 6.7643 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393773232.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:17 Heat of formation + Delta-G solvation = 27.463607 kcal Electronic energy + Delta-G solvation = -16340.958445 eV Core-core repulsion = 13759.269717 eV Total energy + Delta-G solvation = -2581.688728 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.07779 -38.12579 -36.47945 -35.29006 -34.13887 -31.17416 -29.01881 -28.19748 -27.88404 -25.77061 -25.09083 -23.00377 -20.32446 -19.43662 -18.64461 -18.17935 -17.10534 -16.48718 -16.18908 -16.07483 -15.10956 -14.85817 -14.73073 -14.42916 -13.99166 -13.82412 -13.16689 -12.98390 -12.93702 -12.73321 -12.55109 -12.44687 -12.28162 -12.20991 -11.96801 -11.83419 -11.69662 -11.03385 -10.86487 -10.72781 -9.94365 -8.57791 -8.16538 -6.41224 -0.11265 1.05494 1.34073 1.35501 1.49292 1.71096 2.34801 2.72470 2.96359 3.01909 3.62032 3.91223 3.96171 4.01048 4.19652 4.33491 4.39597 4.73605 4.77933 4.89372 4.91290 5.02059 5.04882 5.08839 5.11938 5.17850 5.26444 5.29437 5.38244 5.57895 5.62537 5.81233 6.05758 6.15322 6.67735 7.01500 7.17270 7.39517 8.82155 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.043548 B = 0.005285 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.813576 B = 5296.585814 C = 5435.959646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.014 4.014 3 C -0.120 4.120 4 C -0.149 4.149 5 C 0.414 3.586 6 N -0.565 5.565 7 C 0.139 3.861 8 C -0.291 4.291 9 C 0.367 3.633 10 N -0.623 5.623 11 C 0.210 3.790 12 C -0.534 4.534 13 H 0.046 0.954 14 C 0.006 3.994 15 N -0.929 5.929 16 Si 0.975 3.025 17 H -0.270 1.270 18 H -0.270 1.270 19 H -0.270 1.270 20 N -0.605 5.605 21 H 0.422 0.578 22 H 0.055 0.945 23 H 0.103 0.897 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.057 0.943 31 H 0.181 0.819 32 H 0.124 0.876 33 H 0.002 0.998 34 H -0.006 1.006 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.870 16.807 -13.846 22.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.017 4.017 3 C -0.177 4.177 4 C -0.206 4.206 5 C 0.148 3.852 6 N -0.289 5.289 7 C 0.003 3.997 8 C -0.319 4.319 9 C 0.095 3.905 10 N -0.350 5.350 11 C 0.081 3.919 12 C -0.572 4.572 13 H 0.065 0.935 14 C -0.193 4.193 15 N -0.569 5.569 16 Si 0.799 3.201 17 H -0.195 1.195 18 H -0.196 1.196 19 H -0.195 1.195 20 N -0.229 5.229 21 H 0.262 0.738 22 H 0.074 0.926 23 H 0.122 0.878 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.107 0.893 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.122 0.878 30 H 0.076 0.924 31 H 0.198 0.802 32 H 0.142 0.858 33 H 0.020 0.980 34 H 0.012 0.988 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.889 16.696 -13.892 22.263 hybrid contribution 0.081 -1.677 1.531 2.272 sum -4.808 15.019 -12.361 20.037 Atomic orbital electron populations 1.21958 0.90823 1.02861 1.04265 1.19973 0.97400 0.96826 0.87467 1.21663 1.01143 0.91676 1.03255 1.22039 1.01660 1.00504 0.96435 1.23973 0.86500 0.78969 0.95783 1.68124 1.21948 1.36607 1.02215 1.22484 0.91019 0.91712 0.94528 1.22437 1.11601 0.96322 1.01511 1.19179 0.93079 0.91163 0.87050 1.72085 1.26512 1.06357 1.30004 1.19291 0.93634 0.92318 0.86613 1.21418 0.93280 1.33617 1.08887 0.93547 1.25957 0.98265 0.96563 0.98499 1.70078 1.18003 1.42497 1.26289 0.85256 0.78446 0.78311 0.78100 1.19488 1.19555 1.19523 1.42693 1.56208 1.07067 1.16967 0.73778 0.92579 0.87824 0.92645 0.92879 0.89307 0.91970 0.92253 0.87756 0.92420 0.80209 0.85793 0.98041 0.98826 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.46 71.98 0.61 -1.32 16 2 C -0.01 -0.23 0.93 -52.93 -0.05 -0.28 16 3 C -0.12 -1.70 7.80 71.98 0.56 -1.13 16 4 C -0.15 -1.89 8.21 71.98 0.59 -1.30 16 5 C 0.41 10.93 6.37 137.96 0.88 11.80 16 6 N -0.56 -16.54 8.98 -187.29 -1.68 -18.22 16 7 C 0.14 4.56 11.16 83.79 0.94 5.50 16 8 C -0.29 -12.17 9.24 22.60 0.21 -11.96 16 9 C 0.37 15.99 7.72 134.38 1.04 17.03 16 10 N -0.62 -32.85 10.66 -347.67 -3.71 -36.56 16 11 C 0.21 12.73 5.95 85.63 0.51 13.24 16 12 C -0.53 -33.64 9.39 25.60 0.24 -33.40 16 13 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 14 C 0.01 0.35 5.46 84.66 0.46 0.81 16 15 N -0.93 -58.15 13.29 21.45 0.28 -57.86 16 16 Si 0.98 46.60 29.54 68.60 2.03 48.62 16 17 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 19 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 20 N -0.61 -19.28 5.23 -183.32 -0.96 -20.24 16 21 H 0.42 11.59 7.39 -92.71 -0.69 10.90 16 22 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 23 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.06 1.03 7.84 -2.38 -0.02 1.01 16 28 H 0.06 0.78 6.85 -2.39 -0.02 0.76 16 29 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.18 4.69 8.06 -2.91 -0.02 4.66 16 32 H 0.12 5.87 5.91 -2.91 -0.02 5.85 16 33 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 34 H -0.01 -0.36 5.32 -2.39 -0.01 -0.38 16 35 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -76.60 292.33 2.35 -74.26 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.40 Total: 11.01 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 5.98 Total: -1.01 kcal Atomic # 7 Polarization: -126.82 SS G_CDS: -6.06 Total: -132.88 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.62 kcal Total: -76.60 2.35 -74.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393773232.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.722 kcal (2) G-P(sol) polarization free energy of solvation -76.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds