Wall clock time and date at job start Sun Mar 29 2020 22:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47136 * 2 1 4 4 H 1.08997 * 109.47288 * 302.45794 * 3 2 1 5 5 C 1.50701 * 109.47078 * 182.45726 * 3 2 1 6 6 H 1.07998 * 120.00053 * 240.00701 * 5 3 2 7 7 C 1.37878 * 119.99887 * 59.99632 * 5 3 2 8 8 N 1.31506 * 120.00235 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99646 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47208 * 60.00302 * 9 7 5 11 11 H 1.48497 * 109.46849 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47202 * 300.00122 * 9 7 5 13 13 N 1.46893 * 109.46861 * 62.45715 * 3 2 1 14 14 C 1.46905 * 111.00404 * 64.37010 * 13 3 2 15 15 C 1.46903 * 110.99933 * 188.32094 * 13 3 2 16 16 C 1.50703 * 109.47428 * 164.14976 * 15 13 3 17 17 C 1.38618 * 120.44545 * 94.99959 * 16 15 13 18 18 C 1.38575 * 118.39649 * 180.02562 * 17 16 15 19 19 N 1.32350 * 119.10679 * 0.02562 * 18 17 16 20 20 C 1.31780 * 120.81955 * 359.97438 * 19 18 17 21 21 N 1.31815 * 121.75398 * 359.71863 * 20 19 18 22 22 H 1.09009 * 109.46962 * 294.96638 * 1 2 3 23 23 H 1.09000 * 109.47291 * 54.96339 * 1 2 3 24 24 H 1.08996 * 109.47473 * 174.96518 * 1 2 3 25 25 H 1.09003 * 109.46975 * 240.00237 * 2 1 3 26 26 H 1.08997 * 109.47233 * 120.00097 * 2 1 3 27 27 H 0.96997 * 120.00273 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.47343 * 183.95162 * 14 13 3 29 29 H 1.09004 * 109.46484 * 303.94865 * 14 13 3 30 30 H 1.09000 * 109.46946 * 63.94868 * 14 13 3 31 31 H 1.08997 * 109.47346 * 284.15264 * 15 13 3 32 32 H 1.09004 * 109.47000 * 44.15079 * 15 13 3 33 33 H 1.07992 * 120.80305 * 0.02562 * 17 16 15 34 34 H 1.08000 * 120.44647 * 180.02562 * 18 17 16 35 35 H 1.08000 * 119.12009 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6412 1.9689 -0.8671 5 6 3.5458 1.4430 -0.0609 6 1 4.1182 1.8990 0.7332 7 6 4.1926 0.8609 -1.1304 8 7 3.4956 0.3058 -2.0976 9 14 6.0592 0.8608 -1.2055 10 1 6.6020 0.1433 -0.0242 11 1 6.5045 0.1789 -2.4472 12 1 6.5547 2.2608 -1.2052 13 7 1.5994 2.1176 1.2280 14 6 2.2025 1.4973 2.4152 15 6 1.8993 3.5547 1.1753 16 6 1.1088 4.2722 2.2390 17 6 1.6758 4.5390 3.4755 18 6 0.9104 5.2007 4.4224 19 7 -0.3282 5.5531 4.1172 20 6 -0.8342 5.2827 2.9309 21 7 -0.1341 4.6604 2.0035 22 1 -0.3633 0.4338 0.9317 23 1 -0.3634 0.5900 -0.8414 24 1 -0.3634 -1.0236 -0.0902 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.9506 -0.1034 -2.8502 28 1 1.8058 1.9703 3.3135 29 1 1.9650 0.4335 2.4296 30 1 3.2842 1.6277 2.3834 31 1 2.9643 3.7103 1.3471 32 1 1.6284 3.9467 0.1949 33 1 2.6894 4.2385 3.6955 34 1 1.3192 5.4258 5.3964 35 1 -1.8480 5.5833 2.7109 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396720550.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:12 Heat of formation + Delta-G solvation = 50.069307 kcal Electronic energy + Delta-G solvation = -16765.129491 eV Core-core repulsion = 14184.421020 eV Total energy + Delta-G solvation = -2580.708471 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.76060 -37.37148 -34.01088 -32.77852 -31.88346 -30.90887 -27.30552 -26.86171 -24.55067 -24.01168 -22.87247 -21.26394 -19.03366 -17.32405 -16.61934 -16.33341 -15.47586 -15.27436 -14.60204 -14.08096 -13.79243 -13.66837 -13.31385 -12.79005 -12.30870 -12.08828 -11.65290 -11.21776 -11.08834 -10.92622 -10.80114 -10.65629 -10.56021 -10.39108 -10.04809 -9.73647 -9.58217 -9.36115 -9.18297 -8.92671 -8.41398 -7.24593 -6.03843 -4.17933 1.11482 1.28342 3.23943 3.30091 3.31601 3.96983 4.29079 4.34328 4.37032 4.69091 5.18267 5.20849 5.24410 5.30475 5.62363 5.89724 6.07040 6.10898 6.31449 6.37535 6.44112 6.50098 6.62294 6.68109 6.70728 7.09111 7.18002 7.23034 7.29888 7.55147 7.71538 7.87906 8.08235 8.19901 8.32235 8.39655 8.90648 9.49912 10.95804 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.030823 B = 0.006996 C = 0.006203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.200925 B = 4001.382703 C = 4512.647939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C 0.216 3.784 4 H 0.041 0.959 5 C -0.549 4.549 6 H 0.056 0.944 7 C 0.071 3.929 8 N -0.883 5.883 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.278 1.278 13 N -0.526 5.526 14 C 0.030 3.970 15 C 0.106 3.894 16 C 0.204 3.796 17 C -0.225 4.225 18 C 0.140 3.860 19 N -0.535 5.535 20 C 0.288 3.712 21 N -0.503 5.503 22 H 0.045 0.955 23 H 0.040 0.960 24 H 0.025 0.975 25 H 0.093 0.907 26 H 0.033 0.967 27 H 0.263 0.737 28 H 0.036 0.964 29 H 0.064 0.936 30 H 0.033 0.967 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.143 0.857 34 H 0.162 0.838 35 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.287 5.968 8.886 11.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.148 4.148 3 C 0.110 3.890 4 H 0.059 0.941 5 C -0.588 4.588 6 H 0.074 0.926 7 C -0.132 4.132 8 N -0.521 5.521 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.251 5.251 14 C -0.119 4.119 15 C -0.023 4.023 16 C 0.056 3.944 17 C -0.247 4.247 18 C -0.025 4.025 19 N -0.250 5.250 20 C -0.001 4.001 21 N -0.218 5.218 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.044 0.956 25 H 0.111 0.889 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.161 0.839 34 H 0.179 0.821 35 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -4.705 6.081 8.507 11.467 hybrid contribution 2.831 -0.237 0.115 2.843 sum -1.874 5.844 8.621 10.583 Atomic orbital electron populations 1.21692 0.98721 0.98328 1.00676 1.21604 0.92288 0.98884 1.02044 1.19349 0.92700 0.91093 0.85847 0.94072 1.21688 0.92560 1.38024 1.06542 0.92563 1.24897 0.97972 0.94912 0.95465 1.69857 1.35168 1.37281 1.09799 0.86736 0.86111 0.78198 0.77420 1.20342 1.21190 1.20359 1.62424 1.58088 0.99518 1.05025 1.22283 0.97644 0.99841 0.92138 1.20867 0.95315 0.90293 0.95860 1.22080 0.89859 0.88869 0.93551 1.22839 1.03242 1.02773 0.95868 1.23095 0.89414 0.91036 0.99003 1.68355 1.13779 1.21345 1.21535 1.24947 0.99895 0.90684 0.84527 1.68334 1.07273 1.10990 1.35157 0.93630 0.94037 0.95636 0.88895 0.94810 0.92724 0.94514 0.91705 0.94850 0.92564 0.89260 0.83929 0.82068 0.79250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.71 37.16 0.36 -2.45 16 2 C -0.11 -2.56 5.06 -26.73 -0.14 -2.69 16 3 C 0.22 5.15 1.73 -68.86 -0.12 5.03 16 4 H 0.04 1.10 7.90 -51.93 -0.41 0.69 16 5 C -0.55 -14.03 7.30 -34.44 -0.25 -14.28 16 6 H 0.06 1.42 5.89 -52.49 -0.31 1.11 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 8 N -0.88 -24.20 11.30 55.43 0.63 -23.58 16 9 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.53 -10.83 4.11 -237.72 -0.98 -11.81 16 14 C 0.03 0.56 8.66 60.07 0.52 1.08 16 15 C 0.11 1.98 4.88 -4.97 -0.02 1.96 16 16 C 0.20 3.39 5.85 -82.24 -0.48 2.91 16 17 C -0.22 -3.09 8.66 -39.32 -0.34 -3.44 16 18 C 0.14 1.75 11.30 -17.20 -0.19 1.56 16 19 N -0.54 -7.53 10.44 -14.58 -0.15 -7.68 16 20 C 0.29 4.12 12.29 -92.15 -1.13 2.99 16 21 N -0.50 -8.51 10.38 -10.79 -0.11 -8.62 16 22 H 0.04 0.92 7.83 -51.92 -0.41 0.51 16 23 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.09 2.41 6.01 -51.93 -0.31 2.10 16 26 H 0.03 0.77 6.31 -51.93 -0.33 0.44 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.04 0.62 6.62 -51.93 -0.34 0.27 16 29 H 0.06 1.26 6.19 -51.93 -0.32 0.94 16 30 H 0.03 0.65 6.33 -51.93 -0.33 0.32 16 31 H 0.06 1.05 7.33 -51.93 -0.38 0.66 16 32 H 0.09 1.78 7.84 -51.93 -0.41 1.37 16 33 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.19 2.08 8.06 -52.49 -0.42 1.65 16 LS Contribution 284.83 15.07 4.29 4.29 Total: -1.00 -28.21 284.83 -8.03 -36.25 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -4.80 Total: 1.29 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -1.89 Total: -5.57 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: -0.61 Total: -51.69 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.21 -8.03 -36.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396720550.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.315 kcal (2) G-P(sol) polarization free energy of solvation -28.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds