Wall clock time and date at job start Sun Mar 29 2020 22:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47136 * 2 1 4 4 H 1.08997 * 109.47288 * 302.45794 * 3 2 1 5 5 C 1.50701 * 109.47078 * 182.45726 * 3 2 1 6 6 H 1.07998 * 120.00053 * 240.00701 * 5 3 2 7 7 C 1.37878 * 119.99887 * 59.99632 * 5 3 2 8 8 N 1.31506 * 120.00235 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99646 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47208 * 60.00302 * 9 7 5 11 11 H 1.48497 * 109.46849 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47202 * 300.00122 * 9 7 5 13 13 N 1.46893 * 109.46861 * 62.45715 * 3 2 1 14 14 C 1.46905 * 111.00404 * 64.37010 * 13 3 2 15 15 C 1.46903 * 110.99933 * 188.32094 * 13 3 2 16 16 C 1.50703 * 109.47428 * 164.14976 * 15 13 3 17 17 C 1.38618 * 120.44545 * 94.99959 * 16 15 13 18 18 C 1.38575 * 118.39649 * 180.02562 * 17 16 15 19 19 N 1.32350 * 119.10679 * 0.02562 * 18 17 16 20 20 C 1.31780 * 120.81955 * 359.97438 * 19 18 17 21 21 N 1.31815 * 121.75398 * 359.71863 * 20 19 18 22 22 H 1.09009 * 109.46962 * 294.96638 * 1 2 3 23 23 H 1.09000 * 109.47291 * 54.96339 * 1 2 3 24 24 H 1.08996 * 109.47473 * 174.96518 * 1 2 3 25 25 H 1.09003 * 109.46975 * 240.00237 * 2 1 3 26 26 H 1.08997 * 109.47233 * 120.00097 * 2 1 3 27 27 H 0.96997 * 120.00273 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.47343 * 183.95162 * 14 13 3 29 29 H 1.09004 * 109.46484 * 303.94865 * 14 13 3 30 30 H 1.09000 * 109.46946 * 63.94868 * 14 13 3 31 31 H 1.08997 * 109.47346 * 284.15264 * 15 13 3 32 32 H 1.09004 * 109.47000 * 44.15079 * 15 13 3 33 33 H 1.07992 * 120.80305 * 0.02562 * 17 16 15 34 34 H 1.08000 * 120.44647 * 180.02562 * 18 17 16 35 35 H 1.08000 * 119.12009 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6412 1.9689 -0.8671 5 6 3.5458 1.4430 -0.0609 6 1 4.1182 1.8990 0.7332 7 6 4.1926 0.8609 -1.1304 8 7 3.4956 0.3058 -2.0976 9 14 6.0592 0.8608 -1.2055 10 1 6.6020 0.1433 -0.0242 11 1 6.5045 0.1789 -2.4472 12 1 6.5547 2.2608 -1.2052 13 7 1.5994 2.1176 1.2280 14 6 2.2025 1.4973 2.4152 15 6 1.8993 3.5547 1.1753 16 6 1.1088 4.2722 2.2390 17 6 1.6758 4.5390 3.4755 18 6 0.9104 5.2007 4.4224 19 7 -0.3282 5.5531 4.1172 20 6 -0.8342 5.2827 2.9309 21 7 -0.1341 4.6604 2.0035 22 1 -0.3633 0.4338 0.9317 23 1 -0.3634 0.5900 -0.8414 24 1 -0.3634 -1.0236 -0.0902 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.9506 -0.1034 -2.8502 28 1 1.8058 1.9703 3.3135 29 1 1.9650 0.4335 2.4296 30 1 3.2842 1.6277 2.3834 31 1 2.9643 3.7103 1.3471 32 1 1.6284 3.9467 0.1949 33 1 2.6894 4.2385 3.6955 34 1 1.3192 5.4258 5.3964 35 1 -1.8480 5.5833 2.7109 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396720550.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:12 Heat of formation + Delta-G solvation = 33.049105 kcal Electronic energy + Delta-G solvation = -16765.867543 eV Core-core repulsion = 14184.421020 eV Total energy + Delta-G solvation = -2581.446522 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.89051 -39.05231 -35.46936 -34.27719 -33.42743 -32.44000 -28.82471 -28.63992 -26.15170 -25.16943 -24.47219 -22.72582 -20.88131 -18.57910 -18.27822 -17.65987 -17.18602 -16.35569 -16.25981 -15.49715 -15.28663 -15.20881 -14.63139 -14.40521 -13.95652 -13.57812 -13.40727 -13.07102 -12.74657 -12.66870 -12.50787 -12.30656 -11.92160 -11.76099 -11.67705 -11.55712 -11.29304 -11.04717 -10.51461 -10.42867 -10.10999 -8.96901 -8.02006 -6.24815 0.00957 0.18242 1.41078 1.42060 1.48798 2.41718 2.82282 3.13507 3.20688 3.34703 3.49416 3.78641 4.10024 4.21969 4.44703 4.53032 4.62204 4.69548 4.72763 4.83980 4.89041 4.90308 4.94401 5.08873 5.28585 5.40740 5.47835 5.52214 5.62345 5.78804 6.02554 6.14100 6.15749 6.34884 6.59187 6.94065 7.21881 7.46394 8.93889 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.030823 B = 0.006996 C = 0.006203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.200925 B = 4001.382703 C = 4512.647939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.105 4.105 3 C 0.223 3.777 4 H 0.003 0.997 5 C -0.554 4.554 6 H 0.058 0.942 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.947 3.053 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.529 5.529 14 C 0.037 3.963 15 C 0.112 3.888 16 C 0.182 3.818 17 C -0.221 4.221 18 C 0.150 3.850 19 N -0.541 5.541 20 C 0.284 3.716 21 N -0.535 5.535 22 H 0.050 0.950 23 H 0.031 0.969 24 H 0.045 0.955 25 H 0.064 0.936 26 H 0.035 0.965 27 H 0.261 0.739 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.026 0.974 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.163 0.837 34 H 0.204 0.796 35 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.985 6.599 11.125 13.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.143 4.143 3 C 0.116 3.884 4 H 0.021 0.979 5 C -0.593 4.593 6 H 0.076 0.924 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.774 3.226 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.253 5.253 14 C -0.111 4.111 15 C -0.017 4.017 16 C 0.036 3.964 17 C -0.243 4.243 18 C -0.016 4.016 19 N -0.255 5.255 20 C -0.004 4.004 21 N -0.250 5.250 22 H 0.069 0.931 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.180 0.820 34 H 0.221 0.779 35 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -4.407 6.721 10.759 13.430 hybrid contribution 2.691 -0.366 -0.528 2.767 sum -1.716 6.355 10.232 12.166 Atomic orbital electron populations 1.21543 0.96605 0.99486 1.00480 1.21452 0.94130 0.98126 1.00600 1.19081 0.91841 0.91286 0.86183 0.97927 1.21961 0.93576 1.37375 1.06413 0.92353 1.25620 1.01980 0.94853 0.95321 1.69997 1.36626 1.38162 1.10295 0.85782 0.81306 0.78212 0.77350 1.19691 1.21284 1.19927 1.62324 1.58222 1.00523 1.04251 1.22243 0.97155 0.99538 0.92179 1.20714 0.95780 0.89294 0.95902 1.21749 0.90224 0.90262 0.94140 1.23004 1.04175 1.02428 0.94700 1.23774 0.88549 0.89136 1.00125 1.68466 1.14576 1.21307 1.21196 1.25459 1.00717 0.89963 0.84251 1.68258 1.07830 1.12291 1.36631 0.93104 0.94976 0.93610 0.91767 0.94644 0.92930 0.91997 0.92371 0.95545 0.92634 0.91681 0.81973 0.77905 0.76701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 9.71 71.98 0.70 -4.37 16 2 C -0.10 -4.95 5.06 30.60 0.15 -4.79 16 3 C 0.22 10.91 1.73 44.17 0.08 10.99 16 4 H 0.00 0.16 7.90 -2.39 -0.02 0.14 16 5 C -0.55 -28.66 7.30 25.60 0.19 -28.47 16 6 H 0.06 2.93 5.89 -2.91 -0.02 2.92 16 7 C 0.02 1.19 5.30 84.66 0.45 1.64 16 8 N -0.91 -51.18 11.30 21.45 0.24 -50.94 16 9 Si 0.95 42.08 29.54 68.60 2.03 44.10 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 N -0.53 -21.83 4.11 -906.02 -3.72 -25.55 16 14 C 0.04 1.36 8.66 127.69 1.11 2.47 16 15 C 0.11 4.24 4.88 85.56 0.42 4.66 16 16 C 0.18 5.89 5.85 42.58 0.25 6.13 16 17 C -0.22 -5.47 8.66 22.44 0.19 -5.28 16 18 C 0.15 3.19 11.30 84.70 0.96 4.15 16 19 N -0.54 -13.60 10.44 -200.05 -2.09 -15.69 16 20 C 0.28 7.59 12.29 180.88 2.22 9.81 16 21 N -0.54 -17.65 10.38 -188.06 -1.95 -19.60 16 22 H 0.05 2.01 7.83 -2.38 -0.02 1.99 16 23 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.06 3.42 6.01 -2.39 -0.01 3.41 16 26 H 0.03 1.62 6.31 -2.39 -0.02 1.61 16 27 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 28 H 0.06 1.94 6.62 -2.39 -0.02 1.92 16 29 H 0.06 2.19 6.19 -2.38 -0.01 2.17 16 30 H 0.03 0.99 6.33 -2.39 -0.02 0.98 16 31 H 0.06 2.07 7.33 -2.39 -0.02 2.05 16 32 H 0.06 2.72 7.84 -2.38 -0.02 2.70 16 33 H 0.16 3.32 8.06 -2.91 -0.02 3.29 16 34 H 0.20 2.54 8.06 -2.91 -0.02 2.52 16 35 H 0.22 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -61.02 284.83 2.30 -58.73 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 1.08 Total: 12.01 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 6.71 Total: -3.06 kcal Atomic # 7 Polarization: -104.26 SS G_CDS: -7.52 Total: -111.78 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -61.02 2.30 -58.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396720550.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.774 kcal (2) G-P(sol) polarization free energy of solvation -61.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds