Wall clock time and date at job start Sun Mar 29 2020 22:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 119.99681 * 2 1 4 4 H 1.48504 * 109.46916 * 275.10624 * 3 2 1 5 5 H 1.48494 * 109.47224 * 35.10913 * 3 2 1 6 6 H 1.48504 * 109.46770 * 155.11017 * 3 2 1 7 7 C 1.38810 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99600 * 336.10957 * 7 2 1 9 9 N 1.36931 * 120.00055 * 156.11893 * 7 2 1 10 10 C 1.46507 * 119.99962 * 322.11424 * 9 7 2 11 11 C 1.50695 * 109.47142 * 270.00693 * 10 9 7 12 12 C 1.30517 * 124.45027 * 94.69926 * 11 10 9 13 13 C 1.51106 * 111.10581 * 179.87667 * 12 11 10 14 14 C 1.54628 * 104.78074 * 343.93246 * 13 12 11 15 15 C 1.51107 * 124.44533 * 274.99570 * 11 10 9 16 16 C 1.46501 * 120.00110 * 142.12278 * 9 7 2 17 17 C 1.54265 * 110.03147 * 298.22530 * 16 9 7 18 18 C 1.54958 * 104.16195 * 95.75576 * 17 16 9 19 19 C 1.54889 * 102.77673 * 37.88906 * 18 17 16 20 20 C 1.53874 * 110.03401 * 55.44089 * 16 9 7 21 21 H 0.96999 * 120.00054 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46533 * 30.00399 * 10 9 7 23 23 H 1.09000 * 109.46832 * 150.00313 * 10 9 7 24 24 H 1.08004 * 124.44913 * 0.02562 * 12 11 10 25 25 H 1.09004 * 110.52525 * 225.01645 * 13 12 11 26 26 H 1.08998 * 110.29484 * 102.72755 * 13 12 11 27 27 H 1.09007 * 111.04036 * 266.40751 * 14 13 12 28 28 H 1.08995 * 111.04103 * 142.47111 * 14 13 12 29 29 H 1.09003 * 110.38525 * 315.23084 * 15 11 10 30 30 H 1.08999 * 110.38501 * 77.49081 * 15 11 10 31 31 H 1.08998 * 110.01806 * 176.83566 * 16 9 7 32 32 H 1.09002 * 110.48718 * 214.41013 * 17 16 9 33 33 H 1.09005 * 110.48703 * 337.04307 * 17 16 9 34 34 H 1.09003 * 110.71850 * 279.57257 * 18 17 16 35 35 H 1.08999 * 110.92527 * 156.30049 * 18 17 16 36 36 H 1.09003 * 110.48304 * 203.40571 * 19 18 17 37 37 H 1.08992 * 110.59839 * 80.81857 * 19 18 17 38 38 H 1.08996 * 110.03338 * 359.95500 * 20 16 9 39 39 H 1.09003 * 110.02990 * 121.33458 * 20 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3897 2.1088 -1.3946 5 1 1.5058 2.6191 0.8052 6 1 3.5976 1.4114 0.5893 7 6 2.0103 -1.2021 0.0005 8 1 1.5397 -2.0972 0.3798 9 7 3.2917 -1.2531 -0.4795 10 6 3.6669 -0.4585 -1.6518 11 6 3.4346 -1.2672 -2.9020 12 6 2.3491 -1.2139 -3.6248 13 6 2.4386 -2.1463 -4.8105 14 6 3.9413 -2.4908 -4.9289 15 6 4.4253 -2.2510 -3.4799 16 6 4.2874 -2.1023 0.1790 17 6 4.4992 -1.6368 1.6345 18 6 3.5668 -2.5542 2.4653 19 6 3.7000 -3.9195 1.7462 20 6 3.7791 -3.5529 0.2499 21 1 -0.4850 0.8400 -0.0004 22 1 3.0604 0.4464 -1.6866 23 1 4.7205 -0.1875 -1.5849 24 1 1.4995 -0.5841 -3.4056 25 1 2.0906 -1.6482 -5.7155 26 1 1.8555 -3.0487 -4.6266 27 1 4.4432 -1.8189 -5.6253 28 1 4.0824 -3.5313 -5.2214 29 1 5.4282 -1.8241 -3.4803 30 1 4.4100 -3.1822 -2.9136 31 1 5.2304 -2.0633 -0.3664 32 1 5.5380 -1.7782 1.9329 33 1 4.2078 -0.5926 1.7473 34 1 2.5382 -2.1956 2.4261 35 1 3.9101 -2.6259 3.4973 36 1 2.8254 -4.5402 1.9412 37 1 4.6085 -4.4322 2.0619 38 1 2.7912 -3.6249 -0.2050 39 1 4.4749 -4.2177 -0.2619 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401039929.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:11 Heat of formation + Delta-G solvation = 25.473720 kcal Electronic energy + Delta-G solvation = -17687.882974 eV Core-core repulsion = 15209.648302 eV Total energy + Delta-G solvation = -2478.234672 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -38.43932 -37.42210 -34.10589 -31.48749 -29.25293 -27.89517 -27.75565 -26.90981 -24.79892 -22.30425 -20.33736 -19.88615 -18.84578 -17.62842 -16.35302 -15.38900 -15.20605 -14.96628 -14.59188 -14.17820 -13.36652 -12.87403 -12.67684 -12.31598 -12.18137 -11.67325 -11.41433 -11.26352 -10.95267 -10.77484 -10.75748 -10.70507 -10.45637 -10.36208 -10.30090 -10.11991 -9.91495 -9.83963 -9.62126 -9.41362 -8.41300 -7.93015 -6.73206 -5.94614 -3.32232 3.02506 3.34735 3.49966 3.54457 4.57416 5.07160 5.13747 5.18969 5.35080 5.37172 5.43637 5.53137 5.72692 5.87964 5.97677 6.09813 6.13227 6.15984 6.23422 6.26643 6.29482 6.34975 6.40156 6.44253 6.51653 6.55739 6.60885 6.68845 6.73014 6.75626 6.78128 7.10074 7.10950 7.26916 7.46375 7.79101 8.12703 8.48180 9.07316 9.79043 10.20969 11.21010 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.017771 B = 0.012484 C = 0.008807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.192089 B = 2242.297096 C = 3178.650147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.037 3.963 3 Si 0.865 3.135 4 H -0.287 1.287 5 H -0.303 1.303 6 H -0.268 1.268 7 C -0.249 4.249 8 H 0.080 0.920 9 N -0.591 5.591 10 C 0.178 3.822 11 C -0.135 4.135 12 C -0.169 4.169 13 C -0.093 4.093 14 C -0.124 4.124 15 C -0.087 4.087 16 C 0.175 3.825 17 C -0.132 4.132 18 C -0.117 4.117 19 C -0.118 4.118 20 C -0.131 4.131 21 H 0.261 0.739 22 H 0.061 0.939 23 H 0.041 0.959 24 H 0.120 0.880 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.044 0.956 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.886 -4.577 -3.856 10.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.163 4.163 3 Si 0.696 3.304 4 H -0.215 1.215 5 H -0.232 1.232 6 H -0.193 1.193 7 C -0.378 4.378 8 H 0.097 0.903 9 N -0.312 5.312 10 C 0.053 3.947 11 C -0.138 4.138 12 C -0.188 4.188 13 C -0.130 4.130 14 C -0.162 4.162 15 C -0.124 4.124 16 C 0.068 3.932 17 C -0.171 4.171 18 C -0.154 4.154 19 C -0.156 4.156 20 C -0.171 4.171 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.060 0.940 24 H 0.138 0.862 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.742 -4.483 -3.823 10.542 hybrid contribution 0.256 0.959 0.027 0.993 sum 8.998 -3.525 -3.796 10.383 Atomic orbital electron populations 1.69900 1.05955 1.26463 1.51655 1.25425 0.94918 0.97379 0.98546 0.87117 0.80964 0.85402 0.76938 1.21524 1.23160 1.19252 1.18611 0.87237 0.94192 1.37729 0.90277 1.44235 1.08505 1.51864 1.26557 1.20015 0.97468 0.93177 0.84052 1.22802 0.96226 0.98306 0.96467 1.22942 0.98493 1.00517 0.96882 1.21266 0.95928 0.98628 0.97200 1.22422 0.96314 1.00474 0.96968 1.21225 0.97885 0.98598 0.94662 1.21015 0.90710 0.89914 0.91591 1.22776 0.96929 1.00432 0.97011 1.22434 1.01589 0.94843 0.96536 1.22249 0.99719 0.97300 0.96325 1.22572 1.01992 0.97069 0.95425 0.92922 0.92146 0.94050 0.86183 0.92311 0.91551 0.91843 0.91858 0.92388 0.91238 0.93201 0.93661 0.91320 0.90062 0.93703 0.92840 0.93256 0.90465 0.93843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 13.97 55.49 0.78 -26.11 16 2 C 0.04 1.05 5.27 -17.43 -0.09 0.95 16 3 Si 0.87 21.90 25.19 -169.99 -4.28 17.62 16 4 H -0.29 -7.16 6.64 56.52 0.38 -6.78 16 5 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 6 H -0.27 -6.62 7.08 56.52 0.40 -6.22 16 7 C -0.25 -6.61 7.76 -15.06 -0.12 -6.72 16 8 H 0.08 2.30 6.83 -52.48 -0.36 1.94 16 9 N -0.59 -13.50 1.94 -165.75 -0.32 -13.82 16 10 C 0.18 3.87 4.92 -5.19 -0.03 3.85 16 11 C -0.14 -2.67 5.74 -100.74 -0.58 -3.25 16 12 C -0.17 -3.35 10.59 -35.69 -0.38 -3.73 16 13 C -0.09 -1.49 6.81 -26.83 -0.18 -1.67 16 14 C -0.12 -1.76 7.19 -25.01 -0.18 -1.94 16 15 C -0.09 -1.40 6.76 -26.82 -0.18 -1.58 16 16 C 0.17 3.43 3.47 -66.81 -0.23 3.20 16 17 C -0.13 -2.51 6.15 -25.04 -0.15 -2.66 16 18 C -0.12 -2.12 6.56 -24.70 -0.16 -2.29 16 19 C -0.12 -1.98 6.83 -25.07 -0.17 -2.15 16 20 C -0.13 -2.42 6.15 -25.61 -0.16 -2.57 16 21 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 22 H 0.06 1.45 3.41 -51.93 -0.18 1.27 16 23 H 0.04 0.82 7.96 -51.93 -0.41 0.41 16 24 H 0.12 2.64 8.06 -52.48 -0.42 2.22 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.05 0.91 7.85 -51.93 -0.41 0.50 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 1.47 8.02 -51.93 -0.42 1.06 16 34 H 0.08 1.72 7.13 -51.93 -0.37 1.35 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 1.64 6.74 -51.93 -0.35 1.29 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 300.02 15.07 4.52 4.52 Total: -1.00 -28.35 300.02 -8.65 -37.00 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -6.73 Total: 1.34 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -2.61 Total: -20.56 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.45 Total: -39.93 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.28 Total: 17.62 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.35 -8.65 -37.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401039929.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.474 kcal (2) G-P(sol) polarization free energy of solvation -28.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds