Wall clock time and date at job start Sun Mar 29 2020 22:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 119.99681 * 2 1 4 4 H 1.48504 * 109.46916 * 275.10624 * 3 2 1 5 5 H 1.48494 * 109.47224 * 35.10913 * 3 2 1 6 6 H 1.48504 * 109.46770 * 155.11017 * 3 2 1 7 7 C 1.38810 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99600 * 336.10957 * 7 2 1 9 9 N 1.36931 * 120.00055 * 156.11893 * 7 2 1 10 10 C 1.46507 * 119.99962 * 322.11424 * 9 7 2 11 11 C 1.50695 * 109.47142 * 270.00693 * 10 9 7 12 12 C 1.30517 * 124.45027 * 94.69926 * 11 10 9 13 13 C 1.51106 * 111.10581 * 179.87667 * 12 11 10 14 14 C 1.54628 * 104.78074 * 343.93246 * 13 12 11 15 15 C 1.51107 * 124.44533 * 274.99570 * 11 10 9 16 16 C 1.46501 * 120.00110 * 142.12278 * 9 7 2 17 17 C 1.54265 * 110.03147 * 298.22530 * 16 9 7 18 18 C 1.54958 * 104.16195 * 95.75576 * 17 16 9 19 19 C 1.54889 * 102.77673 * 37.88906 * 18 17 16 20 20 C 1.53874 * 110.03401 * 55.44089 * 16 9 7 21 21 H 0.96999 * 120.00054 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46533 * 30.00399 * 10 9 7 23 23 H 1.09000 * 109.46832 * 150.00313 * 10 9 7 24 24 H 1.08004 * 124.44913 * 0.02562 * 12 11 10 25 25 H 1.09004 * 110.52525 * 225.01645 * 13 12 11 26 26 H 1.08998 * 110.29484 * 102.72755 * 13 12 11 27 27 H 1.09007 * 111.04036 * 266.40751 * 14 13 12 28 28 H 1.08995 * 111.04103 * 142.47111 * 14 13 12 29 29 H 1.09003 * 110.38525 * 315.23084 * 15 11 10 30 30 H 1.08999 * 110.38501 * 77.49081 * 15 11 10 31 31 H 1.08998 * 110.01806 * 176.83566 * 16 9 7 32 32 H 1.09002 * 110.48718 * 214.41013 * 17 16 9 33 33 H 1.09005 * 110.48703 * 337.04307 * 17 16 9 34 34 H 1.09003 * 110.71850 * 279.57257 * 18 17 16 35 35 H 1.08999 * 110.92527 * 156.30049 * 18 17 16 36 36 H 1.09003 * 110.48304 * 203.40571 * 19 18 17 37 37 H 1.08992 * 110.59839 * 80.81857 * 19 18 17 38 38 H 1.08996 * 110.03338 * 359.95500 * 20 16 9 39 39 H 1.09003 * 110.02990 * 121.33458 * 20 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3897 2.1088 -1.3946 5 1 1.5058 2.6191 0.8052 6 1 3.5976 1.4114 0.5893 7 6 2.0103 -1.2021 0.0005 8 1 1.5397 -2.0972 0.3798 9 7 3.2917 -1.2531 -0.4795 10 6 3.6669 -0.4585 -1.6518 11 6 3.4346 -1.2672 -2.9020 12 6 2.3491 -1.2139 -3.6248 13 6 2.4386 -2.1463 -4.8105 14 6 3.9413 -2.4908 -4.9289 15 6 4.4253 -2.2510 -3.4799 16 6 4.2874 -2.1023 0.1790 17 6 4.4992 -1.6368 1.6345 18 6 3.5668 -2.5542 2.4653 19 6 3.7000 -3.9195 1.7462 20 6 3.7791 -3.5529 0.2499 21 1 -0.4850 0.8400 -0.0004 22 1 3.0604 0.4464 -1.6866 23 1 4.7205 -0.1875 -1.5849 24 1 1.4995 -0.5841 -3.4056 25 1 2.0906 -1.6482 -5.7155 26 1 1.8555 -3.0487 -4.6266 27 1 4.4432 -1.8189 -5.6253 28 1 4.0824 -3.5313 -5.2214 29 1 5.4282 -1.8241 -3.4803 30 1 4.4100 -3.1822 -2.9136 31 1 5.2304 -2.0633 -0.3664 32 1 5.5380 -1.7782 1.9329 33 1 4.2078 -0.5926 1.7473 34 1 2.5382 -2.1956 2.4261 35 1 3.9101 -2.6259 3.4973 36 1 2.8254 -4.5402 1.9412 37 1 4.6085 -4.4322 2.0619 38 1 2.7912 -3.6249 -0.2050 39 1 4.4749 -4.2177 -0.2619 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401039929.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:11 Heat of formation + Delta-G solvation = 10.910324 kcal Electronic energy + Delta-G solvation = -17688.514491 eV Core-core repulsion = 15209.648302 eV Total energy + Delta-G solvation = -2478.866188 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.97992 -38.87277 -35.84347 -33.53101 -30.74919 -29.35522 -29.13312 -28.57682 -26.52971 -24.10970 -21.60133 -21.34081 -20.54479 -19.28279 -18.16167 -17.08680 -16.97612 -16.25910 -16.11418 -15.82837 -15.01138 -14.61915 -14.49114 -14.01582 -13.50438 -13.33599 -13.05424 -12.82403 -12.64283 -12.49221 -12.14272 -11.99983 -11.92347 -11.79973 -11.77003 -11.71360 -11.65725 -11.43710 -11.33114 -11.12658 -10.52550 -9.44730 -8.65142 -8.13728 -5.46263 1.27185 1.37033 1.47795 1.49203 2.45266 3.13902 3.47450 3.80221 3.87457 3.97413 4.03940 4.26278 4.28844 4.44731 4.51420 4.68734 4.71333 4.79226 4.80620 4.92241 4.95091 4.97029 5.00953 5.02473 5.04304 5.16007 5.19535 5.26147 5.29366 5.30204 5.45198 5.55065 5.58808 5.76037 5.89138 6.04134 6.22530 6.32696 7.08995 7.74256 8.16182 9.06528 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.017771 B = 0.012484 C = 0.008807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.192089 B = 2242.297096 C = 3178.650147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.019 4.019 3 Si 0.923 3.077 4 H -0.285 1.285 5 H -0.315 1.315 6 H -0.254 1.254 7 C -0.215 4.215 8 H 0.044 0.956 9 N -0.599 5.599 10 C 0.170 3.830 11 C -0.143 4.143 12 C -0.191 4.191 13 C -0.090 4.090 14 C -0.112 4.112 15 C -0.081 4.081 16 C 0.165 3.835 17 C -0.130 4.130 18 C -0.117 4.117 19 C -0.111 4.111 20 C -0.126 4.126 21 H 0.257 0.743 22 H 0.032 0.968 23 H 0.067 0.933 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.084 0.916 38 H 0.037 0.963 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.478 -5.922 -4.664 14.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.214 4.214 3 Si 0.753 3.247 4 H -0.213 1.213 5 H -0.245 1.245 6 H -0.178 1.178 7 C -0.345 4.345 8 H 0.061 0.939 9 N -0.321 5.321 10 C 0.046 3.954 11 C -0.146 4.146 12 C -0.211 4.211 13 C -0.127 4.127 14 C -0.150 4.150 15 C -0.118 4.118 16 C 0.060 3.940 17 C -0.169 4.169 18 C -0.155 4.155 19 C -0.148 4.148 20 C -0.165 4.165 21 H 0.066 0.934 22 H 0.050 0.950 23 H 0.086 0.914 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.103 0.897 38 H 0.056 0.944 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.386 -5.840 -4.639 14.458 hybrid contribution -0.859 1.306 0.288 1.589 sum 11.527 -4.534 -4.351 13.129 Atomic orbital electron populations 1.70019 1.07516 1.26709 1.55265 1.25910 0.95342 1.00257 0.99913 0.86168 0.80034 0.81775 0.76698 1.21274 1.24471 1.17847 1.18374 0.88533 0.92485 1.35132 0.93873 1.44341 1.07836 1.52372 1.27514 1.20061 0.98252 0.92433 0.84691 1.22925 0.97392 0.98701 0.95551 1.23082 0.97456 1.01229 0.99290 1.21275 0.98033 0.97515 0.95882 1.22422 0.94106 1.02471 0.95956 1.21229 0.97747 0.97247 0.95598 1.21310 0.90797 0.89759 0.92163 1.22761 0.99007 0.98551 0.96607 1.22381 0.99072 0.95667 0.98389 1.22233 1.01313 0.96473 0.94818 1.22479 1.00374 0.96945 0.96706 0.93416 0.94976 0.91440 0.90013 0.90739 0.91737 0.90043 0.89385 0.90236 0.91274 0.90558 0.89983 0.94344 0.94455 0.91114 0.93195 0.89710 0.94445 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.16 13.97 21.65 0.30 -59.86 16 2 C -0.02 -1.10 5.27 84.86 0.45 -0.66 16 3 Si 0.92 47.06 25.19 68.60 1.73 48.79 16 4 H -0.28 -14.22 6.64 99.48 0.66 -13.56 16 5 H -0.32 -16.54 7.11 99.48 0.71 -15.84 16 6 H -0.25 -12.24 7.08 99.48 0.70 -11.53 16 7 C -0.21 -11.85 7.76 84.03 0.65 -11.20 16 8 H 0.04 2.68 6.83 -2.91 -0.02 2.66 16 9 N -0.60 -27.23 1.94 -678.32 -1.32 -28.55 16 10 C 0.17 7.26 4.92 85.63 0.42 7.68 16 11 C -0.14 -5.49 5.74 -15.86 -0.09 -5.58 16 12 C -0.19 -7.64 10.59 26.27 0.28 -7.36 16 13 C -0.09 -2.72 6.81 30.53 0.21 -2.51 16 14 C -0.11 -2.72 7.19 31.71 0.23 -2.49 16 15 C -0.08 -2.34 6.76 30.53 0.21 -2.13 16 16 C 0.17 6.12 3.47 45.72 0.16 6.28 16 17 C -0.13 -4.63 6.15 31.69 0.20 -4.43 16 18 C -0.12 -4.13 6.56 31.91 0.21 -3.92 16 19 C -0.11 -3.44 6.83 31.67 0.22 -3.22 16 20 C -0.13 -4.37 6.15 31.32 0.19 -4.18 16 21 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 22 H 0.03 1.55 3.41 -2.39 -0.01 1.55 16 23 H 0.07 2.50 7.96 -2.39 -0.02 2.48 16 24 H 0.08 3.84 8.06 -2.91 -0.02 3.81 16 25 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 26 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.08 2.45 7.85 -2.39 -0.02 2.43 16 32 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.04 1.59 8.02 -2.38 -0.02 1.57 16 34 H 0.04 1.62 7.13 -2.39 -0.02 1.60 16 35 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.04 1.59 6.74 -2.39 -0.02 1.57 16 39 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -65.30 300.02 4.98 -60.32 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.95 Total: 13.02 kcal Atomic # 6 Polarization: -37.05 SS G_CDS: 3.32 Total: -33.73 kcal Atomic # 7 Polarization: -87.39 SS G_CDS: -1.02 Total: -88.40 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.73 Total: 48.79 kcal Total: -65.30 4.98 -60.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401039929.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.233 kcal (2) G-P(sol) polarization free energy of solvation -65.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds