Wall clock time and date at job start Sun Mar 29 2020 22:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99706 * 2 1 4 4 H 1.48506 * 109.47458 * 269.99923 * 3 2 1 5 5 H 1.48501 * 109.47482 * 29.99805 * 3 2 1 6 6 H 1.48503 * 109.47327 * 150.00213 * 3 2 1 7 7 C 1.37872 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99928 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00101 * 180.02562 * 7 2 1 10 10 C 1.53121 * 109.52266 * 180.02562 * 9 7 2 11 11 C 1.53044 * 109.27719 * 177.62432 * 10 9 7 12 12 N 1.46851 * 109.52033 * 300.81589 * 11 10 9 13 13 C 1.46898 * 110.99844 * 185.84109 * 12 11 10 14 14 C 1.50697 * 109.47199 * 170.00483 * 13 12 11 15 15 C 1.30517 * 124.45236 * 95.02450 * 14 13 12 16 16 C 1.51101 * 111.11153 * 179.97438 * 15 14 13 17 17 C 1.54644 * 104.72102 * 16.43328 * 16 15 14 18 18 C 1.51106 * 124.44552 * 274.99910 * 14 13 12 19 19 C 1.46848 * 111.19591 * 61.74742 * 12 11 10 20 20 C 1.53040 * 109.52234 * 298.25512 * 19 12 11 21 21 H 0.96992 * 120.00159 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.52126 * 59.87242 * 9 7 2 23 23 H 1.08999 * 109.50476 * 57.68428 * 10 9 7 24 24 H 1.09000 * 109.53552 * 297.57930 * 10 9 7 25 25 H 1.09004 * 109.46049 * 180.80798 * 11 10 9 26 26 H 1.08992 * 109.45403 * 60.83226 * 11 10 9 27 27 H 1.08999 * 109.46869 * 49.99787 * 13 12 11 28 28 H 1.08998 * 109.46890 * 290.00366 * 13 12 11 29 29 H 1.08002 * 124.44926 * 359.95146 * 15 14 13 30 30 H 1.08998 * 110.39426 * 135.24235 * 16 15 14 31 31 H 1.09002 * 110.38901 * 257.63033 * 16 15 14 32 32 H 1.08992 * 111.03822 * 217.33820 * 17 16 15 33 33 H 1.08996 * 111.03346 * 93.39957 * 17 16 15 34 34 H 1.08997 * 110.38952 * 282.39515 * 18 14 13 35 35 H 1.09009 * 110.38734 * 44.77091 * 18 14 13 36 36 H 1.08999 * 109.46296 * 58.26947 * 19 12 11 37 37 H 1.08995 * 109.46121 * 178.24176 * 19 12 11 38 38 H 1.09005 * 109.50412 * 299.23826 * 20 19 12 39 39 H 1.08998 * 109.50411 * 179.12190 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0233 -2.6371 0.0010 11 6 5.5526 -2.6309 -0.0583 12 7 5.9937 -1.9361 -1.2745 13 6 7.4507 -2.0308 -1.4358 14 6 7.8386 -1.5278 -2.8024 15 6 8.2274 -0.3082 -3.0573 16 6 8.5421 -0.1329 -4.5247 17 6 7.8798 -1.3471 -5.2165 18 6 7.8290 -2.3693 -4.0574 19 6 5.5542 -0.5349 -1.2746 20 6 4.0250 -0.4785 -1.2515 21 1 -0.4850 0.8400 -0.0004 22 1 3.8754 -0.6780 0.8897 23 1 3.6276 -3.1635 -0.8676 24 1 3.6965 -3.1398 0.9113 25 1 5.9196 -3.6571 -0.0730 26 1 5.9477 -2.1163 0.8175 27 1 7.7612 -3.0703 -1.3295 28 1 7.9407 -1.4255 -0.6732 29 1 8.3127 0.4732 -2.3167 30 1 8.1122 0.7971 -4.8969 31 1 9.6200 -0.1454 -4.6861 32 1 8.4970 -1.7152 -6.0360 33 1 6.8769 -1.1001 -5.5645 34 1 8.7037 -3.0190 -4.0857 35 1 6.9144 -2.9599 -4.1116 36 1 5.9496 -0.0303 -0.3930 37 1 5.9224 -0.0389 -2.1726 38 1 3.6293 -0.9710 -2.1398 39 1 3.6994 0.5616 -1.2358 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401142024.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:20 Heat of formation + Delta-G solvation = 9.473221 kcal Electronic energy + Delta-G solvation = -17116.007338 eV Core-core repulsion = 14637.078832 eV Total energy + Delta-G solvation = -2478.928506 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.20889 -37.75303 -34.03929 -31.80533 -30.26448 -29.46933 -28.34958 -26.23231 -23.73861 -22.51744 -21.28532 -20.67052 -18.79510 -17.94951 -16.65245 -15.90804 -15.52333 -15.16751 -14.48803 -14.21171 -13.61725 -13.19795 -12.89329 -12.74050 -12.51375 -12.32654 -11.90765 -11.67647 -11.55667 -11.17790 -11.13359 -11.09978 -10.99700 -10.75468 -10.51018 -10.03368 -9.86112 -9.57398 -9.04483 -8.88153 -8.68114 -8.46692 -7.87793 -6.02536 -4.00458 2.21826 3.29851 3.39646 3.41995 4.40333 4.45207 4.59799 4.67117 5.02592 5.13544 5.28919 5.39265 5.49266 5.55823 5.58272 5.69681 5.73482 5.76476 5.88979 5.92437 5.96804 6.01828 6.06394 6.15426 6.23069 6.23962 6.41784 6.48909 6.60689 6.78412 6.87807 6.98104 6.99395 7.27220 7.47455 7.58977 7.69346 7.84017 8.58759 9.02258 9.60853 11.11096 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.031173 B = 0.006803 C = 0.006163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.007150 B = 4115.040163 C = 4541.944111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.509 4.509 8 H 0.073 0.927 9 C 0.012 3.988 10 C -0.096 4.096 11 C 0.057 3.943 12 N -0.528 5.528 13 C 0.098 3.902 14 C -0.112 4.112 15 C -0.175 4.175 16 C -0.096 4.096 17 C -0.125 4.125 18 C -0.089 4.089 19 C 0.054 3.946 20 C -0.115 4.115 21 H 0.262 0.738 22 H 0.020 0.980 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.025 0.975 27 H 0.076 0.924 28 H 0.034 0.966 29 H 0.118 0.882 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.021 0.979 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.664 -2.269 -6.394 18.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.226 1.226 6 H -0.193 1.193 7 C -0.546 4.546 8 H 0.091 0.909 9 C -0.007 4.007 10 C -0.133 4.133 11 C -0.071 4.071 12 N -0.253 5.253 13 C -0.029 4.029 14 C -0.112 4.112 15 C -0.195 4.195 16 C -0.133 4.133 17 C -0.163 4.163 18 C -0.126 4.126 19 C -0.074 4.074 20 C -0.152 4.152 21 H 0.072 0.928 22 H 0.038 0.962 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.043 0.957 27 H 0.095 0.905 28 H 0.052 0.948 29 H 0.136 0.864 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.039 0.961 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.271 -2.409 -6.780 18.710 hybrid contribution 0.750 1.503 0.717 1.826 sum 18.021 -0.906 -6.064 19.035 Atomic orbital electron populations 1.69901 1.06256 1.26791 1.51297 1.25018 0.94662 0.98973 0.94632 0.86856 0.79792 0.83740 0.77878 1.20578 1.22617 1.19300 1.21070 0.88892 0.94389 1.50293 0.90872 1.19191 0.96603 0.92034 0.92823 1.21490 0.91330 0.99267 1.01254 1.22199 0.98185 0.97227 0.89450 1.61904 1.09752 1.15120 1.38476 1.20780 0.89098 1.00579 0.92445 1.21879 0.98260 0.95568 0.95528 1.23102 1.02276 0.96889 0.97200 1.21284 1.00206 0.98816 0.92970 1.22440 1.01063 0.95489 0.97263 1.21233 1.02119 0.97636 0.91635 1.22228 0.98033 0.87712 0.99384 1.21995 0.91529 0.99793 1.01908 0.92781 0.96155 0.91794 0.92379 0.91841 0.95697 0.90511 0.94781 0.86429 0.91446 0.91228 0.91350 0.91010 0.91247 0.90429 0.96062 0.91513 0.91356 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.11 13.96 55.43 0.77 -27.34 16 2 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 3 Si 0.89 22.47 24.36 -169.99 -4.14 18.33 16 4 H -0.28 -6.88 6.89 56.52 0.39 -6.50 16 5 H -0.30 -7.57 7.11 56.52 0.40 -7.16 16 6 H -0.27 -6.54 6.53 56.52 0.37 -6.17 16 7 C -0.51 -14.50 9.15 -34.44 -0.32 -14.82 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 9 C 0.01 0.30 1.75 -91.65 -0.16 0.14 16 10 C -0.10 -1.94 5.32 -26.65 -0.14 -2.09 16 11 C 0.06 0.97 5.46 -3.83 -0.02 0.95 16 12 N -0.53 -8.99 4.65 -236.11 -1.10 -10.08 16 13 C 0.10 1.37 5.40 -4.98 -0.03 1.34 16 14 C -0.11 -1.46 4.98 -100.73 -0.50 -1.96 16 15 C -0.18 -2.18 9.26 -35.69 -0.33 -2.51 16 16 C -0.10 -1.01 6.81 -26.82 -0.18 -1.19 16 17 C -0.13 -1.31 7.19 -25.01 -0.18 -1.49 16 18 C -0.09 -1.03 6.76 -26.83 -0.18 -1.21 16 19 C 0.05 1.01 5.26 -3.83 -0.02 0.99 16 20 C -0.11 -2.56 4.84 -26.65 -0.13 -2.69 16 21 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 22 H 0.02 0.51 7.19 -51.93 -0.37 0.13 16 23 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 24 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.06 0.94 8.02 -51.93 -0.42 0.52 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.96 7.99 -51.93 -0.41 0.55 16 28 H 0.03 0.47 8.10 -51.93 -0.42 0.05 16 29 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.98 8.14 -51.92 -0.42 0.55 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 1.18 6.17 -51.93 -0.32 0.86 16 38 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 39 H 0.05 1.09 3.38 -51.93 -0.18 0.92 16 LS Contribution 295.89 15.07 4.46 4.46 Total: -1.00 -30.19 295.89 -9.09 -39.27 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -6.79 Total: -2.00 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -2.29 Total: -22.64 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: -0.32 Total: -37.42 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.14 Total: 18.33 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.19 -9.09 -39.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401142024.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.745 kcal (2) G-P(sol) polarization free energy of solvation -30.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds