Wall clock time and date at job start Sun Mar 29 2020 22:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99706 * 2 1 4 4 H 1.48506 * 109.47458 * 269.99923 * 3 2 1 5 5 H 1.48501 * 109.47482 * 29.99805 * 3 2 1 6 6 H 1.48503 * 109.47327 * 150.00213 * 3 2 1 7 7 C 1.37872 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99928 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00101 * 180.02562 * 7 2 1 10 10 C 1.53121 * 109.52266 * 180.02562 * 9 7 2 11 11 C 1.53044 * 109.27719 * 177.62432 * 10 9 7 12 12 N 1.46851 * 109.52033 * 300.81589 * 11 10 9 13 13 C 1.46898 * 110.99844 * 185.84109 * 12 11 10 14 14 C 1.50697 * 109.47199 * 170.00483 * 13 12 11 15 15 C 1.30517 * 124.45236 * 95.02450 * 14 13 12 16 16 C 1.51101 * 111.11153 * 179.97438 * 15 14 13 17 17 C 1.54644 * 104.72102 * 16.43328 * 16 15 14 18 18 C 1.51106 * 124.44552 * 274.99910 * 14 13 12 19 19 C 1.46848 * 111.19591 * 61.74742 * 12 11 10 20 20 C 1.53040 * 109.52234 * 298.25512 * 19 12 11 21 21 H 0.96992 * 120.00159 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.52126 * 59.87242 * 9 7 2 23 23 H 1.08999 * 109.50476 * 57.68428 * 10 9 7 24 24 H 1.09000 * 109.53552 * 297.57930 * 10 9 7 25 25 H 1.09004 * 109.46049 * 180.80798 * 11 10 9 26 26 H 1.08992 * 109.45403 * 60.83226 * 11 10 9 27 27 H 1.08999 * 109.46869 * 49.99787 * 13 12 11 28 28 H 1.08998 * 109.46890 * 290.00366 * 13 12 11 29 29 H 1.08002 * 124.44926 * 359.95146 * 15 14 13 30 30 H 1.08998 * 110.39426 * 135.24235 * 16 15 14 31 31 H 1.09002 * 110.38901 * 257.63033 * 16 15 14 32 32 H 1.08992 * 111.03822 * 217.33820 * 17 16 15 33 33 H 1.08996 * 111.03346 * 93.39957 * 17 16 15 34 34 H 1.08997 * 110.38952 * 282.39515 * 18 14 13 35 35 H 1.09009 * 110.38734 * 44.77091 * 18 14 13 36 36 H 1.08999 * 109.46296 * 58.26947 * 19 12 11 37 37 H 1.08995 * 109.46121 * 178.24176 * 19 12 11 38 38 H 1.09005 * 109.50412 * 299.23826 * 20 19 12 39 39 H 1.08998 * 109.50411 * 179.12190 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0233 -2.6371 0.0010 11 6 5.5526 -2.6309 -0.0583 12 7 5.9937 -1.9361 -1.2745 13 6 7.4507 -2.0308 -1.4358 14 6 7.8386 -1.5278 -2.8024 15 6 8.2274 -0.3082 -3.0573 16 6 8.5421 -0.1329 -4.5247 17 6 7.8798 -1.3471 -5.2165 18 6 7.8290 -2.3693 -4.0574 19 6 5.5542 -0.5349 -1.2746 20 6 4.0250 -0.4785 -1.2515 21 1 -0.4850 0.8400 -0.0004 22 1 3.8754 -0.6780 0.8897 23 1 3.6276 -3.1635 -0.8676 24 1 3.6965 -3.1398 0.9113 25 1 5.9196 -3.6571 -0.0730 26 1 5.9477 -2.1163 0.8175 27 1 7.7612 -3.0703 -1.3295 28 1 7.9407 -1.4255 -0.6732 29 1 8.3127 0.4732 -2.3167 30 1 8.1122 0.7971 -4.8969 31 1 9.6200 -0.1454 -4.6861 32 1 8.4970 -1.7152 -6.0360 33 1 6.8769 -1.1001 -5.5645 34 1 8.7037 -3.0190 -4.0857 35 1 6.9144 -2.9599 -4.1116 36 1 5.9496 -0.0303 -0.3930 37 1 5.9224 -0.0389 -2.1726 38 1 3.6293 -0.9710 -2.1398 39 1 3.6994 0.5616 -1.2358 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401142024.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:20 Heat of formation + Delta-G solvation = -8.981802 kcal Electronic energy + Delta-G solvation = -17116.807608 eV Core-core repulsion = 14637.078832 eV Total energy + Delta-G solvation = -2479.728776 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.40310 -38.97701 -35.75922 -33.76508 -31.80582 -30.71250 -29.24568 -27.83651 -25.21454 -24.08487 -22.84132 -21.60673 -20.46783 -18.94683 -18.79609 -17.33214 -16.53375 -16.39492 -15.93283 -15.69326 -15.21223 -14.88533 -14.71647 -14.04969 -13.81162 -13.54283 -13.36736 -13.26802 -12.77498 -12.62931 -12.31678 -12.18354 -12.08625 -11.93819 -11.89737 -11.82308 -11.69187 -11.38544 -10.98596 -10.81305 -10.62628 -9.62618 -9.16344 -8.30695 -6.33383 1.26205 1.27601 1.32105 1.42892 2.30785 3.04596 3.12648 3.71147 3.77349 4.09115 4.10876 4.21787 4.24962 4.26015 4.40975 4.51906 4.56776 4.64278 4.70058 4.71334 4.79157 4.89823 4.92340 4.94208 4.96998 5.08123 5.11912 5.17776 5.24412 5.26212 5.42522 5.51737 5.66583 5.68229 5.76759 6.01301 6.20039 6.28041 6.32493 6.73575 7.31741 8.86569 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.031173 B = 0.006803 C = 0.006163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.007150 B = 4115.040163 C = 4541.944111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.010 3.990 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.297 1.297 6 H -0.250 1.250 7 C -0.516 4.516 8 H 0.032 0.968 9 C 0.011 3.989 10 C -0.093 4.093 11 C 0.065 3.935 12 N -0.539 5.539 13 C 0.100 3.900 14 C -0.131 4.131 15 C -0.176 4.176 16 C -0.096 4.096 17 C -0.124 4.124 18 C -0.089 4.089 19 C 0.065 3.935 20 C -0.112 4.112 21 H 0.265 0.735 22 H 0.016 0.984 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.093 0.907 26 H 0.031 0.969 27 H 0.093 0.907 28 H 0.040 0.960 29 H 0.119 0.881 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.025 0.975 37 H 0.079 0.921 38 H 0.052 0.948 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.832 -1.742 -6.945 22.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.193 1.193 5 H -0.225 1.225 6 H -0.174 1.174 7 C -0.554 4.554 8 H 0.051 0.949 9 C -0.008 4.008 10 C -0.130 4.130 11 C -0.063 4.063 12 N -0.263 5.263 13 C -0.026 4.026 14 C -0.131 4.131 15 C -0.195 4.195 16 C -0.132 4.132 17 C -0.162 4.162 18 C -0.126 4.126 19 C -0.063 4.063 20 C -0.149 4.149 21 H 0.074 0.926 22 H 0.035 0.965 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.111 0.889 26 H 0.050 0.950 27 H 0.111 0.889 28 H 0.058 0.942 29 H 0.137 0.863 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.043 0.957 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 20.466 -1.900 -7.335 21.824 hybrid contribution -0.291 1.244 0.886 1.555 sum 20.175 -0.656 -6.449 21.191 Atomic orbital electron populations 1.70051 1.08156 1.27922 1.53101 1.25881 0.95418 1.02956 0.94365 0.85826 0.78994 0.78869 0.78641 1.19304 1.22506 1.17424 1.21411 0.91642 0.92871 1.49466 0.94925 1.19163 0.93436 0.94732 0.93451 1.21399 0.94299 0.96633 1.00714 1.22104 0.95154 0.99138 0.89863 1.61848 1.12227 1.13861 1.38411 1.20832 0.86691 1.01889 0.93211 1.21972 0.99290 0.96215 0.95625 1.23338 1.01293 0.96602 0.98278 1.21330 1.01304 0.98892 0.91720 1.22459 1.00892 0.95265 0.97555 1.21247 1.02072 0.97789 0.91468 1.22029 0.94917 0.89194 1.00133 1.21846 0.94568 0.98474 1.00043 0.92617 0.96541 0.93147 0.92362 0.88922 0.95044 0.88858 0.94203 0.86348 0.91154 0.89513 0.89344 0.92185 0.89677 0.91942 0.95726 0.90311 0.92912 0.94600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.02 13.96 21.45 0.30 -60.72 16 2 C 0.01 0.62 5.45 84.65 0.46 1.08 16 3 Si 0.95 46.43 24.36 68.60 1.67 48.10 16 4 H -0.27 -12.46 6.89 99.48 0.69 -11.78 16 5 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.25 -11.41 6.53 99.48 0.65 -10.76 16 7 C -0.52 -30.33 9.15 25.60 0.23 -30.10 16 8 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 9 C 0.01 0.53 1.75 -11.46 -0.02 0.51 16 10 C -0.09 -3.72 5.32 30.65 0.16 -3.55 16 11 C 0.06 2.04 5.46 86.33 0.47 2.51 16 12 N -0.54 -16.94 4.65 -900.93 -4.19 -21.13 16 13 C 0.10 2.47 5.40 85.56 0.46 2.93 16 14 C -0.13 -3.03 4.98 -15.86 -0.08 -3.11 16 15 C -0.18 -3.84 9.26 26.27 0.24 -3.60 16 16 C -0.10 -1.72 6.81 30.53 0.21 -1.51 16 17 C -0.12 -2.27 7.19 31.71 0.23 -2.04 16 18 C -0.09 -1.82 6.76 30.53 0.21 -1.62 16 19 C 0.07 2.28 5.26 86.33 0.45 2.74 16 20 C -0.11 -4.88 4.84 30.65 0.15 -4.73 16 21 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 22 H 0.02 0.80 7.19 -2.39 -0.02 0.78 16 23 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.09 2.41 8.02 -2.39 -0.02 2.39 16 26 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.09 1.98 7.99 -2.39 -0.02 1.96 16 28 H 0.04 0.95 8.10 -2.39 -0.02 0.93 16 29 H 0.12 2.53 8.06 -2.91 -0.02 2.51 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 2.58 6.17 -2.39 -0.01 2.56 16 38 H 0.05 2.43 8.14 -2.38 -0.02 2.41 16 39 H 0.04 1.63 3.38 -2.39 -0.01 1.62 16 Total: -1.00 -66.01 295.89 1.88 -64.13 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.91 Total: 10.13 kcal Atomic # 6 Polarization: -43.68 SS G_CDS: 3.18 Total: -40.50 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -3.89 Total: -81.85 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.67 Total: 48.10 kcal Total: -66.01 1.88 -64.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401142024.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.148 kcal (2) G-P(sol) polarization free energy of solvation -66.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds