Wall clock time and date at job start Sun Mar 29 2020 21:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32272 * 119.90217 * 2 1 4 4 C 1.31918 * 120.08492 * 179.97438 * 3 2 1 5 5 C 1.50708 * 120.05572 * 179.97438 * 4 3 2 6 6 C 1.39339 * 119.89526 * 0.02562 * 4 3 2 7 7 N 1.38990 * 120.09970 * 179.97438 * 6 4 3 8 8 C 1.46497 * 120.00353 * 180.02562 * 7 6 4 9 9 C 1.52996 * 109.47544 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47329 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99884 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00074 * 179.97438 * 10 9 8 13 13 N 1.31508 * 119.99768 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99941 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.46889 * 60.00156 * 14 12 10 16 16 H 1.48497 * 109.47013 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47411 * 300.00312 * 14 12 10 18 18 N 1.32660 * 119.80307 * 359.97438 * 6 4 3 19 19 C 1.32247 * 119.91230 * 359.72104 * 18 6 4 20 20 C 1.50697 * 119.94714 * 180.29402 * 19 18 6 21 21 H 1.09002 * 109.47152 * 89.99988 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.00089 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.00070 * 1 2 3 24 24 H 1.08997 * 109.47001 * 90.00171 * 5 4 3 25 25 H 1.08994 * 109.47278 * 210.00656 * 5 4 3 26 26 H 1.09001 * 109.46795 * 330.00010 * 5 4 3 27 27 H 0.97004 * 119.99733 * 0.02562 * 7 6 4 28 28 H 1.09003 * 109.46816 * 299.99967 * 8 7 6 29 29 H 1.09003 * 109.47198 * 59.99504 * 8 7 6 30 30 H 1.09003 * 109.46919 * 299.99760 * 9 8 7 31 31 H 1.09003 * 109.47395 * 59.99481 * 9 8 7 32 32 H 0.97002 * 119.99779 * 180.02562 * 13 12 10 33 33 H 1.08999 * 109.47372 * 270.26397 * 20 19 18 34 34 H 1.09005 * 109.47121 * 30.25687 * 20 19 18 35 35 H 1.09003 * 109.47538 * 150.25899 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1664 1.1466 0.0000 4 6 3.4856 1.1508 0.0005 5 6 4.2363 2.4577 -0.0001 6 6 4.1839 -0.0549 0.0005 7 7 5.5738 -0.0554 0.0005 8 6 6.3059 -1.3244 -0.0001 9 6 7.8102 -1.0454 0.0007 10 6 8.5633 -2.3507 0.0008 11 1 8.0229 -3.2858 -0.0001 12 6 9.9421 -2.3512 0.0009 13 7 10.6000 -1.2126 0.0014 14 14 10.8755 -3.9693 0.0002 15 1 10.5165 -4.7473 -1.2128 16 1 12.3355 -3.6985 0.0011 17 1 10.5163 -4.7485 1.2122 18 7 3.5183 -1.2024 0.0005 19 6 2.1958 -1.1976 0.0061 20 6 1.4389 -2.5007 0.0128 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 0.8900 0.5138 23 1 -0.3633 -0.8900 0.5139 24 1 4.4168 2.7734 1.0274 25 1 5.1891 2.3292 -0.5135 26 1 3.6456 3.2156 -0.5147 27 1 6.0591 0.7845 0.0009 28 1 6.0424 -1.8962 0.8897 29 1 6.0423 -1.8955 -0.8903 30 1 8.0741 -0.4733 -0.8888 31 1 8.0735 -0.4744 0.8911 32 1 11.5700 -1.2129 0.0011 33 1 1.2561 -2.8200 -1.0132 34 1 2.0261 -3.2594 0.5302 35 1 0.4869 -2.3653 0.5263 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413238689.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:31 Heat of formation + Delta-G solvation = 27.589247 kcal Electronic energy + Delta-G solvation = -16008.171711 eV Core-core repulsion = 13426.488432 eV Total energy + Delta-G solvation = -2581.683279 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.93249 -36.52501 -34.64594 -33.67191 -32.33998 -30.29829 -29.56322 -27.74321 -25.38315 -24.21697 -22.63073 -21.25565 -20.82720 -17.67926 -17.10667 -16.07677 -15.47243 -14.84234 -14.55182 -14.05295 -13.96178 -13.52920 -13.39606 -12.98119 -12.90061 -12.43215 -12.30682 -12.17025 -12.16402 -11.58748 -11.25125 -11.17610 -11.06675 -10.80510 -10.64576 -10.22247 -9.63147 -9.35670 -9.34742 -8.71848 -8.44742 -7.26910 -6.10610 -4.13642 1.19681 1.61281 3.29746 3.33757 3.36027 3.54665 3.97148 4.32820 4.38293 4.52750 4.73824 5.05097 5.17340 5.26384 5.34213 5.45743 5.52492 5.62923 5.68824 5.69939 5.83663 5.89974 6.05028 6.15013 6.28424 6.35198 6.60612 6.74934 7.33203 7.43893 7.60243 7.61567 7.88539 7.99960 8.23924 8.42452 8.91850 9.51072 11.01067 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.038210 B = 0.004941 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.614922 B = 5665.302732 C = 6361.559979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.013 4.013 3 N -0.404 5.404 4 C 0.006 3.994 5 C -0.091 4.091 6 C 0.368 3.632 7 N -0.702 5.702 8 C 0.131 3.869 9 C 0.012 3.988 10 C -0.521 4.521 11 H 0.059 0.941 12 C 0.059 3.941 13 N -0.894 5.894 14 Si 0.897 3.103 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 N -0.500 5.500 19 C 0.129 3.871 20 C -0.103 4.103 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.408 0.592 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.021 0.979 31 H 0.022 0.978 32 H 0.263 0.737 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.863 3.162 0.028 17.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.154 4.154 3 N -0.118 5.118 4 C -0.146 4.146 5 C -0.149 4.149 6 C 0.126 3.874 7 N -0.333 5.333 8 C 0.009 3.991 9 C -0.026 4.026 10 C -0.560 4.560 11 H 0.077 0.923 12 C -0.142 4.142 13 N -0.533 5.533 14 Si 0.725 3.275 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.201 1.201 18 N -0.224 5.224 19 C -0.013 4.013 20 C -0.160 4.160 21 H 0.087 0.913 22 H 0.088 0.912 23 H 0.092 0.908 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.095 0.905 27 H 0.246 0.754 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.545 3.029 0.025 16.820 hybrid contribution 0.947 -0.541 -0.025 1.091 sum -15.598 2.488 0.000 15.795 Atomic orbital electron populations 1.20504 0.88691 1.02826 1.02331 1.21451 0.97550 0.88802 1.07592 1.67773 1.07419 1.29314 1.07331 1.21490 0.90358 0.95001 1.07702 1.20496 0.98846 0.92706 1.02817 1.19281 0.87160 0.89699 0.91264 1.45229 1.00578 1.11034 1.76493 1.21704 0.93807 0.83062 1.00566 1.19325 0.87386 0.98091 0.97780 1.20985 0.91232 0.92250 1.51541 0.92315 1.24994 0.97743 0.96542 0.94963 1.69944 1.07788 1.25325 1.50227 0.86567 0.78565 0.83612 0.78765 1.20106 1.21217 1.20110 1.67897 1.08080 1.27650 1.18734 1.21721 0.89400 0.96288 0.93843 1.20756 0.99117 0.92978 1.03192 0.91307 0.91235 0.90848 0.90720 0.91040 0.90504 0.75395 0.92740 0.92765 0.96025 0.96003 0.92767 0.90204 0.90354 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.86 9.78 36.01 0.35 -0.51 16 2 C -0.01 -0.18 6.78 -82.43 -0.56 -0.74 16 3 N -0.40 -6.45 10.34 -5.39 -0.06 -6.50 16 4 C 0.01 0.09 6.81 -82.14 -0.56 -0.47 16 5 C -0.09 -1.13 9.76 36.01 0.35 -0.78 16 6 C 0.37 6.59 7.47 -154.73 -1.16 5.44 16 7 N -0.70 -12.83 5.61 -60.31 -0.34 -13.17 16 8 C 0.13 2.80 5.65 -4.05 -0.02 2.78 16 9 C 0.01 0.29 5.09 -27.89 -0.14 0.15 16 10 C -0.52 -14.46 9.11 -34.44 -0.31 -14.78 16 11 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 14 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 N -0.50 -9.10 9.66 -8.48 -0.08 -9.18 16 19 C 0.13 1.96 6.78 -82.44 -0.56 1.40 16 20 C -0.10 -1.11 9.78 36.00 0.35 -0.76 16 21 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.07 0.57 5.92 -51.93 -0.31 0.26 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.07 0.84 6.56 -51.93 -0.34 0.49 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.41 6.69 6.47 -40.82 -0.26 6.43 16 28 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.64 5.93 -51.93 -0.31 0.34 16 LS Contribution 294.56 15.07 4.44 4.44 Total: -1.00 -31.38 294.56 -7.66 -39.04 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -4.99 Total: 1.21 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -2.35 Total: -6.70 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: 0.26 Total: -54.31 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.38 -7.66 -39.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413238689.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.633 kcal (2) G-P(sol) polarization free energy of solvation -31.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds