Wall clock time and date at job start Sun Mar 29 2020 21:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32272 * 119.90217 * 2 1 4 4 C 1.31918 * 120.08492 * 179.97438 * 3 2 1 5 5 C 1.50708 * 120.05572 * 179.97438 * 4 3 2 6 6 C 1.39339 * 119.89526 * 0.02562 * 4 3 2 7 7 N 1.38990 * 120.09970 * 179.97438 * 6 4 3 8 8 C 1.46497 * 120.00353 * 180.02562 * 7 6 4 9 9 C 1.52996 * 109.47544 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47329 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99884 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00074 * 179.97438 * 10 9 8 13 13 N 1.31508 * 119.99768 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99941 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.46889 * 60.00156 * 14 12 10 16 16 H 1.48497 * 109.47013 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47411 * 300.00312 * 14 12 10 18 18 N 1.32660 * 119.80307 * 359.97438 * 6 4 3 19 19 C 1.32247 * 119.91230 * 359.72104 * 18 6 4 20 20 C 1.50697 * 119.94714 * 180.29402 * 19 18 6 21 21 H 1.09002 * 109.47152 * 89.99988 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.00089 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.00070 * 1 2 3 24 24 H 1.08997 * 109.47001 * 90.00171 * 5 4 3 25 25 H 1.08994 * 109.47278 * 210.00656 * 5 4 3 26 26 H 1.09001 * 109.46795 * 330.00010 * 5 4 3 27 27 H 0.97004 * 119.99733 * 0.02562 * 7 6 4 28 28 H 1.09003 * 109.46816 * 299.99967 * 8 7 6 29 29 H 1.09003 * 109.47198 * 59.99504 * 8 7 6 30 30 H 1.09003 * 109.46919 * 299.99760 * 9 8 7 31 31 H 1.09003 * 109.47395 * 59.99481 * 9 8 7 32 32 H 0.97002 * 119.99779 * 180.02562 * 13 12 10 33 33 H 1.08999 * 109.47372 * 270.26397 * 20 19 18 34 34 H 1.09005 * 109.47121 * 30.25687 * 20 19 18 35 35 H 1.09003 * 109.47538 * 150.25899 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1664 1.1466 0.0000 4 6 3.4856 1.1508 0.0005 5 6 4.2363 2.4577 -0.0001 6 6 4.1839 -0.0549 0.0005 7 7 5.5738 -0.0554 0.0005 8 6 6.3059 -1.3244 -0.0001 9 6 7.8102 -1.0454 0.0007 10 6 8.5633 -2.3507 0.0008 11 1 8.0229 -3.2858 -0.0001 12 6 9.9421 -2.3512 0.0009 13 7 10.6000 -1.2126 0.0014 14 14 10.8755 -3.9693 0.0002 15 1 10.5165 -4.7473 -1.2128 16 1 12.3355 -3.6985 0.0011 17 1 10.5163 -4.7485 1.2122 18 7 3.5183 -1.2024 0.0005 19 6 2.1958 -1.1976 0.0061 20 6 1.4389 -2.5007 0.0128 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 0.8900 0.5138 23 1 -0.3633 -0.8900 0.5139 24 1 4.4168 2.7734 1.0274 25 1 5.1891 2.3292 -0.5135 26 1 3.6456 3.2156 -0.5147 27 1 6.0591 0.7845 0.0009 28 1 6.0424 -1.8962 0.8897 29 1 6.0423 -1.8955 -0.8903 30 1 8.0741 -0.4733 -0.8888 31 1 8.0735 -0.4744 0.8911 32 1 11.5700 -1.2129 0.0011 33 1 1.2561 -2.8200 -1.0132 34 1 2.0261 -3.2594 0.5302 35 1 0.4869 -2.3653 0.5263 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413238689.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:31 Heat of formation + Delta-G solvation = 7.386886 kcal Electronic energy + Delta-G solvation = -16009.047751 eV Core-core repulsion = 13426.488432 eV Total energy + Delta-G solvation = -2582.559320 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.14155 -37.95957 -35.82508 -35.45838 -33.92574 -31.55421 -31.00432 -28.84851 -26.96516 -25.59221 -24.05861 -22.66476 -22.32358 -18.96020 -18.81309 -17.85174 -16.70385 -16.50260 -15.90126 -15.59883 -15.57150 -14.61762 -14.44578 -14.22828 -13.91996 -13.78566 -13.44815 -13.35491 -13.32116 -13.04398 -12.89095 -12.54342 -12.45443 -12.38517 -12.28048 -11.71177 -11.58954 -11.44795 -10.74442 -10.55612 -9.95615 -8.57890 -8.25188 -6.36213 0.01074 0.36342 1.40805 1.43459 1.51459 2.16361 2.42616 2.77395 3.09526 3.27237 3.34837 3.56428 4.02903 4.13839 4.30344 4.47812 4.50506 4.61403 4.68127 4.71537 4.75387 4.84892 4.87967 4.98185 5.10189 5.11997 5.20000 5.35593 5.56016 5.56891 5.73224 6.01854 6.17241 6.20908 6.74860 6.78744 7.12713 7.33230 8.86781 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.038210 B = 0.004941 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.614922 B = 5665.302732 C = 6361.559979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.008 4.008 3 N -0.419 5.419 4 C 0.000 4.000 5 C -0.089 4.089 6 C 0.342 3.658 7 N -0.707 5.707 8 C 0.159 3.841 9 C 0.022 3.978 10 C -0.546 4.546 11 H 0.060 0.940 12 C 0.007 3.993 13 N -0.928 5.928 14 Si 0.967 3.033 15 H -0.267 1.267 16 H -0.281 1.281 17 H -0.267 1.267 18 N -0.530 5.530 19 C 0.112 3.888 20 C -0.099 4.099 21 H 0.085 0.915 22 H 0.072 0.928 23 H 0.100 0.900 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.414 0.586 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.004 0.996 31 H 0.004 0.996 32 H 0.266 0.734 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.618 2.461 0.028 18.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.150 4.150 3 N -0.134 5.134 4 C -0.149 4.149 5 C -0.146 4.146 6 C 0.102 3.898 7 N -0.341 5.341 8 C 0.035 3.965 9 C -0.016 4.016 10 C -0.584 4.584 11 H 0.079 0.921 12 C -0.192 4.192 13 N -0.567 5.567 14 Si 0.791 3.209 15 H -0.192 1.192 16 H -0.206 1.206 17 H -0.192 1.192 18 N -0.254 5.254 19 C -0.029 4.029 20 C -0.157 4.157 21 H 0.103 0.897 22 H 0.091 0.909 23 H 0.119 0.881 24 H 0.104 0.896 25 H 0.094 0.906 26 H 0.107 0.893 27 H 0.253 0.747 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -18.336 2.349 0.025 18.486 hybrid contribution 1.325 -0.296 -0.028 1.358 sum -17.011 2.054 -0.003 17.135 Atomic orbital electron populations 1.20666 0.85269 1.04394 1.03816 1.22265 0.99764 0.88177 1.04768 1.67921 1.07241 1.30108 1.08140 1.21879 0.90690 0.95496 1.06853 1.20569 0.98843 0.91467 1.03762 1.19461 0.86731 0.90663 0.92956 1.44885 1.01011 1.09940 1.78293 1.21098 0.91663 0.84300 0.99407 1.19134 0.89720 0.96765 0.95965 1.21410 0.92074 0.93257 1.51679 0.92145 1.25900 0.98716 1.00264 0.94329 1.70061 1.08187 1.27569 1.50931 0.85474 0.77130 0.79113 0.79194 1.19227 1.20616 1.19232 1.67876 1.09937 1.28373 1.19225 1.22452 0.88612 0.98488 0.93370 1.20894 0.99781 0.90547 1.04431 0.89672 0.90857 0.88115 0.89618 0.90611 0.89272 0.74665 0.93860 0.93886 0.97745 0.97731 0.92536 0.88766 0.91202 0.86885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 9.78 71.24 0.70 -0.69 16 2 C -0.01 -0.21 6.78 42.47 0.29 0.08 16 3 N -0.42 -12.84 10.34 -170.98 -1.77 -14.60 16 4 C 0.00 0.00 6.81 42.81 0.29 0.29 16 5 C -0.09 -2.16 9.76 71.24 0.70 -1.46 16 6 C 0.34 12.38 7.47 133.04 0.99 13.37 16 7 N -0.71 -26.60 5.61 -344.71 -1.93 -28.54 16 8 C 0.16 7.04 5.65 86.38 0.49 7.52 16 9 C 0.02 1.12 5.09 29.85 0.15 1.27 16 10 C -0.55 -30.82 9.11 25.60 0.23 -30.59 16 11 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 12 C 0.01 0.37 5.46 84.66 0.46 0.84 16 13 N -0.93 -55.11 13.29 21.45 0.28 -54.83 16 14 Si 0.97 43.74 29.54 68.60 2.03 45.76 16 15 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 16 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 17 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 18 N -0.53 -19.32 9.66 -180.75 -1.75 -21.06 16 19 C 0.11 3.24 6.78 42.48 0.29 3.52 16 20 C -0.10 -1.90 9.78 71.23 0.70 -1.20 16 21 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 23 H 0.10 1.11 5.92 -2.38 -0.01 1.09 16 24 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.08 1.76 6.56 -2.39 -0.02 1.74 16 26 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.41 14.06 6.47 -92.71 -0.60 13.46 16 28 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 34 H 0.07 1.47 8.14 -2.38 -0.02 1.46 16 35 H 0.11 1.37 5.93 -2.39 -0.01 1.35 16 Total: -1.00 -68.08 294.56 2.64 -65.45 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.49 Total: 14.87 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: 5.28 Total: -7.05 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -5.16 Total: -119.03 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -68.08 2.64 -65.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413238689.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.833 kcal (2) G-P(sol) polarization free energy of solvation -68.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds