Wall clock time and date at job start Sun Mar 29 2020 21:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30793 * 120.41988 * 2 1 4 4 C 1.33331 * 121.21105 * 180.02562 * 3 2 1 5 5 C 1.34873 * 122.05262 * 359.95748 * 4 3 2 6 6 N 1.36548 * 120.72248 * 0.02562 * 5 4 3 7 7 H 0.97003 * 120.65036 * 180.02562 * 6 5 4 8 8 C 1.37790 * 118.70569 * 0.02562 * 6 5 4 9 9 N 1.31433 * 120.92966 * 179.72374 * 8 6 5 10 10 C 1.46496 * 119.99909 * 353.99953 * 9 8 6 11 11 C 1.52998 * 109.47325 * 114.57804 * 10 9 8 12 12 C 1.52998 * 109.46837 * 299.99970 * 11 10 9 13 13 C 1.52993 * 109.47279 * 59.99687 * 11 10 9 14 14 C 1.50700 * 109.47330 * 180.02562 * 11 10 9 15 15 H 1.08006 * 119.99919 * 359.97438 * 14 11 10 16 16 C 1.37876 * 120.00315 * 180.02562 * 14 11 10 17 17 N 1.31513 * 119.99688 * 359.97438 * 16 14 11 18 18 Si 1.86797 * 120.00062 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.47195 * 59.99826 * 18 16 14 20 20 H 1.48498 * 109.47117 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47101 * 299.99824 * 18 16 14 22 22 H 1.09000 * 109.47687 * 270.00324 * 1 2 3 23 23 H 1.09007 * 109.47155 * 30.00021 * 1 2 3 24 24 H 1.08999 * 109.47642 * 149.99873 * 1 2 3 25 25 H 1.07994 * 118.97083 * 179.97438 * 4 3 2 26 26 H 1.08002 * 119.63795 * 180.02562 * 5 4 3 27 27 H 1.08997 * 109.47039 * 234.57880 * 10 9 8 28 28 H 1.09003 * 109.46949 * 354.57407 * 10 9 8 29 29 H 1.08994 * 109.47254 * 60.00275 * 12 11 10 30 30 H 1.09005 * 109.46757 * 180.02562 * 12 11 10 31 31 H 1.09001 * 109.47307 * 299.99426 * 12 11 10 32 32 H 1.09013 * 109.47129 * 60.00290 * 13 11 10 33 33 H 1.08994 * 109.47607 * 179.97438 * 13 11 10 34 34 H 1.08994 * 109.47452 * 300.00662 * 13 11 10 35 35 H 0.97000 * 119.99570 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1692 1.1279 0.0000 4 6 3.5023 1.1463 -0.0005 5 6 4.2338 0.0131 -0.0002 6 7 3.6260 -1.2096 0.0001 7 1 4.1531 -2.0239 0.0007 8 6 2.2492 -1.2642 -0.0004 9 7 1.6188 -2.4175 -0.0055 10 6 2.3748 -3.6648 -0.1434 11 6 2.2471 -4.4834 1.1428 12 6 2.8036 -3.6770 2.3179 13 6 0.7734 -4.8058 1.3979 14 6 3.0252 -5.7662 1.0012 15 1 3.5573 -5.9767 0.0851 16 6 3.0571 -6.6716 2.0405 17 7 2.4087 -6.4155 3.1557 18 14 4.0210 -8.2619 1.8646 19 1 5.4515 -7.9489 1.6175 20 1 3.8972 -9.0565 3.1130 21 1 3.4813 -9.0443 0.7238 22 1 -0.3634 0.0001 1.0276 23 1 -0.3634 0.8900 -0.5139 24 1 -0.3634 -0.8899 -0.5138 25 1 4.0123 2.0982 -0.0009 26 1 5.3122 0.0735 -0.0002 27 1 1.9784 -4.2392 -0.9806 28 1 3.4247 -3.4350 -0.3252 29 1 2.2411 -2.7491 2.4205 30 1 2.7130 -4.2605 3.2342 31 1 3.8535 -3.4474 2.1362 32 1 0.3769 -5.3804 0.5606 33 1 0.6824 -5.3894 2.3139 34 1 0.2109 -3.8779 1.5005 35 1 2.4308 -7.0526 3.8867 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413402682.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:33 Heat of formation + Delta-G solvation = 57.051819 kcal Electronic energy + Delta-G solvation = -16808.326756 eV Core-core repulsion = 14227.921069 eV Total energy + Delta-G solvation = -2580.405686 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.39790 -36.75037 -34.85107 -33.79271 -31.47988 -29.81060 -27.55749 -25.91207 -25.55082 -25.08650 -22.71905 -21.71183 -18.65598 -18.18326 -17.18628 -15.99817 -15.29612 -14.94185 -14.58867 -14.37120 -13.74094 -13.25207 -12.90202 -12.71091 -12.40358 -12.21756 -11.88398 -11.50642 -11.21541 -11.08704 -10.80524 -10.73286 -10.32475 -10.16582 -10.11028 -9.58508 -9.44808 -9.15978 -8.96000 -8.51279 -8.33304 -6.93075 -5.97191 -4.09758 1.04260 2.21520 3.15954 3.27149 3.32827 3.34650 3.89410 4.35173 4.46398 4.54242 4.98803 5.24757 5.27438 5.55083 5.80880 5.94005 6.01148 6.03975 6.29904 6.44875 6.57107 6.61102 6.79029 6.92050 7.08448 7.10680 7.23701 7.35276 7.45859 7.67932 7.73246 8.09398 8.15645 8.24994 8.43691 8.56456 8.91745 9.55802 11.02680 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.040744 B = 0.006450 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.047913 B = 4339.962320 C = 4678.789018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.166 3.834 3 N -0.441 5.441 4 C -0.081 4.081 5 C 0.094 3.906 6 N -0.633 5.633 7 H 0.419 0.581 8 C 0.320 3.680 9 N -0.535 5.535 10 C 0.063 3.937 11 C 0.075 3.925 12 C -0.126 4.126 13 C -0.120 4.120 14 C -0.513 4.513 15 H 0.052 0.948 16 C 0.067 3.933 17 N -0.883 5.883 18 Si 0.890 3.110 19 H -0.279 1.279 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.155 0.845 26 H 0.155 0.845 27 H 0.072 0.928 28 H 0.013 0.987 29 H 0.009 0.991 30 H 0.083 0.917 31 H 0.011 0.989 32 H 0.020 0.980 33 H 0.076 0.924 34 H 0.021 0.979 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.786 11.279 -5.128 12.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.010 4.010 3 N -0.152 5.152 4 C -0.220 4.220 5 C -0.037 4.037 6 N -0.257 5.257 7 H 0.260 0.740 8 C 0.047 3.953 9 N -0.261 5.261 10 C -0.067 4.067 11 C 0.074 3.926 12 C -0.184 4.184 13 C -0.178 4.178 14 C -0.552 4.552 15 H 0.070 0.930 16 C -0.134 4.134 17 N -0.521 5.521 18 Si 0.718 3.282 19 H -0.205 1.205 20 H -0.213 1.213 21 H -0.203 1.203 22 H 0.097 0.903 23 H 0.092 0.908 24 H 0.106 0.894 25 H 0.173 0.827 26 H 0.173 0.827 27 H 0.090 0.910 28 H 0.032 0.968 29 H 0.028 0.972 30 H 0.102 0.898 31 H 0.030 0.970 32 H 0.039 0.961 33 H 0.094 0.906 34 H 0.040 0.960 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.697 11.591 -4.897 12.602 hybrid contribution 2.491 -2.052 -0.051 3.227 sum 3.188 9.539 -4.948 11.209 Atomic orbital electron populations 1.20483 0.86915 1.03460 1.03303 1.22876 0.96762 0.83954 0.97383 1.67532 1.09130 1.28682 1.09861 1.21282 0.89455 0.97152 1.14141 1.22543 0.99511 0.85758 0.95877 1.43140 1.07742 1.08440 1.66341 0.73973 1.22239 0.79866 0.96035 0.97210 1.73129 1.34048 0.96941 1.21984 1.22277 0.93097 0.89714 1.01604 1.18117 0.94228 0.92054 0.88219 1.21777 0.96089 0.97215 1.03271 1.21641 0.96047 0.98432 1.01667 1.21069 1.30908 1.02852 1.00361 0.93020 1.24891 0.95369 0.97922 0.95268 1.69828 1.41962 1.35737 1.04595 0.86695 0.80386 0.83682 0.77404 1.20500 1.21255 1.20284 0.90277 0.90848 0.89353 0.82744 0.82741 0.90960 0.96838 0.97172 0.89828 0.96968 0.96080 0.90576 0.96035 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.05 36.00 0.36 -0.75 16 2 C 0.17 2.63 7.04 -79.67 -0.56 2.06 16 3 N -0.44 -6.68 10.34 -8.01 -0.08 -6.77 16 4 C -0.08 -1.04 11.01 -18.09 -0.20 -1.23 16 5 C 0.09 1.12 11.18 -16.65 -0.19 0.93 16 6 N -0.63 -9.55 5.33 -10.68 -0.06 -9.60 16 7 H 0.42 6.31 6.44 -40.82 -0.26 6.04 16 8 C 0.32 5.59 7.45 -153.97 -1.15 4.44 16 9 N -0.54 -10.56 8.35 -58.70 -0.49 -11.05 16 10 C 0.06 1.34 5.12 -4.04 -0.02 1.32 16 11 C 0.07 1.83 0.57 -155.67 -0.09 1.74 16 12 C -0.13 -3.07 8.09 37.16 0.30 -2.77 16 13 C -0.12 -3.01 8.09 37.15 0.30 -2.71 16 14 C -0.51 -13.71 8.01 -34.44 -0.28 -13.99 16 15 H 0.05 1.36 7.74 -52.48 -0.41 0.95 16 16 C 0.07 1.81 5.15 -17.82 -0.09 1.71 16 17 N -0.88 -24.50 9.35 55.43 0.52 -23.98 16 18 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 22 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.09 1.22 7.68 -51.93 -0.40 0.82 16 25 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 26 H 0.16 1.21 8.06 -52.49 -0.42 0.78 16 27 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 28 H 0.01 0.27 5.60 -51.93 -0.29 -0.02 16 29 H 0.01 0.22 7.45 -51.93 -0.39 -0.16 16 30 H 0.08 2.26 6.07 -51.93 -0.32 1.94 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 33 H 0.08 2.07 6.07 -51.93 -0.32 1.75 16 34 H 0.02 0.50 7.60 -51.93 -0.39 0.11 16 35 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 285.78 15.07 4.31 4.31 Total: -1.00 -29.65 285.78 -7.30 -36.95 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -4.86 Total: 3.51 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -1.61 Total: -9.24 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -0.11 Total: -51.40 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.65 -7.30 -36.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413402682.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.000 kcal (2) G-P(sol) polarization free energy of solvation -29.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds