Wall clock time and date at job start Sun Mar 29 2020 21:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30793 * 120.41988 * 2 1 4 4 C 1.33331 * 121.21105 * 180.02562 * 3 2 1 5 5 C 1.34873 * 122.05262 * 359.95748 * 4 3 2 6 6 N 1.36548 * 120.72248 * 0.02562 * 5 4 3 7 7 H 0.97003 * 120.65036 * 180.02562 * 6 5 4 8 8 C 1.37790 * 118.70569 * 0.02562 * 6 5 4 9 9 N 1.31433 * 120.92966 * 179.72374 * 8 6 5 10 10 C 1.46496 * 119.99909 * 353.99953 * 9 8 6 11 11 C 1.52998 * 109.47325 * 114.57804 * 10 9 8 12 12 C 1.52998 * 109.46837 * 299.99970 * 11 10 9 13 13 C 1.52993 * 109.47279 * 59.99687 * 11 10 9 14 14 C 1.50700 * 109.47330 * 180.02562 * 11 10 9 15 15 H 1.08006 * 119.99919 * 359.97438 * 14 11 10 16 16 C 1.37876 * 120.00315 * 180.02562 * 14 11 10 17 17 N 1.31513 * 119.99688 * 359.97438 * 16 14 11 18 18 Si 1.86797 * 120.00062 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.47195 * 59.99826 * 18 16 14 20 20 H 1.48498 * 109.47117 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47101 * 299.99824 * 18 16 14 22 22 H 1.09000 * 109.47687 * 270.00324 * 1 2 3 23 23 H 1.09007 * 109.47155 * 30.00021 * 1 2 3 24 24 H 1.08999 * 109.47642 * 149.99873 * 1 2 3 25 25 H 1.07994 * 118.97083 * 179.97438 * 4 3 2 26 26 H 1.08002 * 119.63795 * 180.02562 * 5 4 3 27 27 H 1.08997 * 109.47039 * 234.57880 * 10 9 8 28 28 H 1.09003 * 109.46949 * 354.57407 * 10 9 8 29 29 H 1.08994 * 109.47254 * 60.00275 * 12 11 10 30 30 H 1.09005 * 109.46757 * 180.02562 * 12 11 10 31 31 H 1.09001 * 109.47307 * 299.99426 * 12 11 10 32 32 H 1.09013 * 109.47129 * 60.00290 * 13 11 10 33 33 H 1.08994 * 109.47607 * 179.97438 * 13 11 10 34 34 H 1.08994 * 109.47452 * 300.00662 * 13 11 10 35 35 H 0.97000 * 119.99570 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1692 1.1279 0.0000 4 6 3.5023 1.1463 -0.0005 5 6 4.2338 0.0131 -0.0002 6 7 3.6260 -1.2096 0.0001 7 1 4.1531 -2.0239 0.0007 8 6 2.2492 -1.2642 -0.0004 9 7 1.6188 -2.4175 -0.0055 10 6 2.3748 -3.6648 -0.1434 11 6 2.2471 -4.4834 1.1428 12 6 2.8036 -3.6770 2.3179 13 6 0.7734 -4.8058 1.3979 14 6 3.0252 -5.7662 1.0012 15 1 3.5573 -5.9767 0.0851 16 6 3.0571 -6.6716 2.0405 17 7 2.4087 -6.4155 3.1557 18 14 4.0210 -8.2619 1.8646 19 1 5.4515 -7.9489 1.6175 20 1 3.8972 -9.0565 3.1130 21 1 3.4813 -9.0443 0.7238 22 1 -0.3634 0.0001 1.0276 23 1 -0.3634 0.8900 -0.5139 24 1 -0.3634 -0.8899 -0.5138 25 1 4.0123 2.0982 -0.0009 26 1 5.3122 0.0735 -0.0002 27 1 1.9784 -4.2392 -0.9806 28 1 3.4247 -3.4350 -0.3252 29 1 2.2411 -2.7491 2.4205 30 1 2.7130 -4.2605 3.2342 31 1 3.8535 -3.4474 2.1362 32 1 0.3769 -5.3804 0.5606 33 1 0.6824 -5.3894 2.3139 34 1 0.2109 -3.8779 1.5005 35 1 2.4308 -7.0526 3.8867 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413402682.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:32 Heat of formation + Delta-G solvation = 38.785485 kcal Electronic energy + Delta-G solvation = -16809.118844 eV Core-core repulsion = 14227.921069 eV Total energy + Delta-G solvation = -2581.197774 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.59457 -38.41491 -36.25221 -35.14669 -33.27327 -31.19517 -28.64261 -27.62269 -27.49079 -27.01632 -23.95995 -23.03240 -20.45252 -19.35656 -18.44438 -17.94361 -16.79208 -16.56876 -15.95756 -15.43998 -15.12780 -14.90278 -14.63315 -14.11200 -13.81229 -13.48453 -13.34751 -13.15333 -12.91823 -12.70104 -12.61786 -12.37594 -12.27946 -12.13343 -11.66865 -11.45672 -10.89190 -10.73666 -10.65514 -10.40396 -10.04365 -8.19700 -7.97785 -6.20106 -0.07170 0.97467 1.41460 1.42984 1.49778 1.96839 2.42971 2.73816 3.19289 3.20891 3.55631 4.01618 4.12727 4.33343 4.50840 4.63683 4.73101 4.75935 4.87488 4.93304 4.99325 5.13044 5.15377 5.26334 5.36320 5.45087 5.53470 5.62345 5.65309 5.73920 6.03538 6.09193 6.25552 6.43056 6.86477 7.00371 7.22955 7.48568 8.97226 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.040744 B = 0.006450 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.047913 B = 4339.962320 C = 4678.789018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.133 3.867 3 N -0.440 5.440 4 C -0.093 4.093 5 C 0.103 3.897 6 N -0.633 5.633 7 H 0.420 0.580 8 C 0.327 3.673 9 N -0.574 5.574 10 C 0.077 3.923 11 C 0.066 3.934 12 C -0.106 4.106 13 C -0.107 4.107 14 C -0.530 4.530 15 H 0.050 0.950 16 C 0.022 3.978 17 N -0.906 5.906 18 Si 0.949 3.051 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.275 1.275 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.078 0.922 25 H 0.190 0.810 26 H 0.205 0.795 27 H 0.058 0.942 28 H 0.023 0.977 29 H 0.011 0.989 30 H 0.054 0.946 31 H 0.017 0.983 32 H 0.014 0.986 33 H 0.050 0.950 34 H 0.026 0.974 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.481 12.659 -5.755 14.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.041 4.041 3 N -0.151 5.151 4 C -0.233 4.233 5 C -0.026 4.026 6 N -0.255 5.255 7 H 0.260 0.740 8 C 0.054 3.946 9 N -0.302 5.302 10 C -0.053 4.053 11 C 0.065 3.935 12 C -0.164 4.164 13 C -0.165 4.165 14 C -0.568 4.568 15 H 0.069 0.931 16 C -0.177 4.177 17 N -0.544 5.544 18 Si 0.775 3.225 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.201 1.201 22 H 0.097 0.903 23 H 0.110 0.890 24 H 0.096 0.904 25 H 0.206 0.794 26 H 0.221 0.779 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.394 12.995 -5.533 14.325 hybrid contribution 2.077 -2.286 0.132 3.092 sum 4.471 10.709 -5.401 12.800 Atomic orbital electron populations 1.20459 0.85884 1.03841 1.03424 1.23086 0.97669 0.83421 0.99891 1.67562 1.10627 1.28287 1.08658 1.21966 0.88793 0.99027 1.13470 1.23302 1.01815 0.84052 0.93468 1.43312 1.07201 1.09847 1.65159 0.73964 1.22607 0.80958 0.96094 0.94975 1.73126 1.33929 0.96738 1.26452 1.21893 0.93850 0.90446 0.99131 1.18143 0.93200 0.92094 0.90042 1.21525 0.96347 0.96624 1.01872 1.21480 0.97038 0.98034 0.99965 1.21394 1.31149 1.04000 1.00296 0.93150 1.25591 0.96269 1.00777 0.95047 1.69976 1.42876 1.36518 1.05074 0.85760 0.79355 0.80144 0.77209 1.19719 1.21192 1.20052 0.90272 0.89022 0.90354 0.79357 0.77869 0.92398 0.95871 0.96980 0.92670 0.96422 0.96690 0.93108 0.95479 0.93208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.04 10.05 71.23 0.72 -1.33 16 2 C 0.13 4.05 7.04 44.89 0.32 4.36 16 3 N -0.44 -12.25 10.34 -179.25 -1.85 -14.10 16 4 C -0.09 -2.02 11.01 83.69 0.92 -1.10 16 5 C 0.10 2.06 11.18 83.19 0.93 2.99 16 6 N -0.63 -17.57 5.33 -187.72 -1.00 -18.57 16 7 H 0.42 11.69 6.44 -92.71 -0.60 11.09 16 8 C 0.33 11.02 7.45 135.73 1.01 12.03 16 9 N -0.57 -22.61 8.35 -339.63 -2.84 -25.45 16 10 C 0.08 3.29 5.12 86.38 0.44 3.73 16 11 C 0.07 3.27 0.57 -52.93 -0.03 3.24 16 12 C -0.11 -5.18 8.09 71.98 0.58 -4.60 16 13 C -0.11 -5.50 8.09 71.98 0.58 -4.92 16 14 C -0.53 -28.41 8.01 25.60 0.21 -28.21 16 15 H 0.05 2.65 7.74 -2.91 -0.02 2.62 16 16 C 0.02 1.21 5.15 84.65 0.44 1.65 16 17 N -0.91 -50.99 9.35 21.45 0.20 -50.79 16 18 Si 0.95 42.81 29.54 68.60 2.03 44.84 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 20 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 22 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 24 H 0.08 2.17 7.68 -2.39 -0.02 2.16 16 25 H 0.19 2.76 8.06 -2.91 -0.02 2.73 16 26 H 0.20 2.01 8.06 -2.91 -0.02 1.99 16 27 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.02 0.91 5.60 -2.39 -0.01 0.90 16 29 H 0.01 0.54 7.45 -2.39 -0.02 0.52 16 30 H 0.05 3.01 6.07 -2.38 -0.01 3.00 16 31 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.01 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.05 2.83 6.07 -2.39 -0.01 2.82 16 34 H 0.03 1.30 7.60 -2.39 -0.02 1.28 16 35 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -63.83 285.78 3.14 -60.69 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.49 Total: 15.55 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: 6.11 Total: -12.16 kcal Atomic # 7 Polarization: -103.43 SS G_CDS: -5.49 Total: -108.92 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -63.83 3.14 -60.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413402682.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.477 kcal (2) G-P(sol) polarization free energy of solvation -63.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds