Wall clock time and date at job start Sun Mar 29 2020 21:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35650 * 119.79124 * 2 1 4 4 C 1.41981 * 118.60068 * 179.72369 * 3 2 1 5 5 N 1.31473 * 120.92017 * 180.29983 * 4 3 2 6 6 C 1.46506 * 120.00201 * 173.98525 * 5 4 3 7 7 C 1.53000 * 109.47352 * 114.57065 * 6 5 4 8 8 C 1.52999 * 109.46780 * 299.99952 * 7 6 5 9 9 C 1.53006 * 109.46852 * 59.99779 * 7 6 5 10 10 C 1.50696 * 109.47058 * 179.97438 * 7 6 5 11 11 H 1.08005 * 119.99902 * 0.02562 * 10 7 6 12 12 C 1.37873 * 120.00119 * 179.97438 * 10 7 6 13 13 N 1.31520 * 120.00090 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 120.00335 * 180.02562 * 12 10 7 15 15 H 1.48497 * 109.47343 * 90.00141 * 14 12 10 16 16 H 1.48501 * 109.47050 * 210.00460 * 14 12 10 17 17 H 1.48506 * 109.46720 * 329.99948 * 14 12 10 18 18 N 1.38039 * 118.16526 * 0.27530 * 4 3 2 19 19 H 0.97000 * 120.31294 * 179.97438 * 18 4 3 20 20 C 1.35662 * 119.37255 * 359.97438 * 18 4 3 21 21 N 1.30405 * 121.41749 * 0.02773 * 20 18 4 22 22 H 1.09002 * 109.46888 * 90.00401 * 1 2 3 23 23 H 1.09005 * 109.47001 * 210.00114 * 1 2 3 24 24 H 1.09002 * 109.47667 * 329.99978 * 1 2 3 25 25 H 1.07998 * 120.69756 * 359.97438 * 3 2 1 26 26 H 1.09003 * 109.46617 * 234.56938 * 6 5 4 27 27 H 1.09002 * 109.46794 * 354.56818 * 6 5 4 28 28 H 1.08995 * 109.47198 * 60.00260 * 8 7 6 29 29 H 1.09006 * 109.46871 * 179.97438 * 8 7 6 30 30 H 1.08990 * 109.47143 * 299.99814 * 8 7 6 31 31 H 1.09001 * 109.46930 * 60.00040 * 9 7 6 32 32 H 1.08996 * 109.46598 * 179.97438 * 9 7 6 33 33 H 1.08995 * 109.47573 * 300.00013 * 9 7 6 34 34 H 0.96995 * 120.00496 * 179.97438 * 13 12 10 35 35 H 1.07995 * 119.28888 * 180.02562 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1809 1.1772 0.0000 4 6 3.6004 1.1477 0.0060 5 7 4.2993 2.2613 0.0122 6 6 5.7568 2.2108 0.1512 7 6 6.4099 2.7224 -1.1343 8 6 5.9789 1.8433 -2.3100 9 6 5.9716 4.1660 -1.3894 10 6 7.9091 2.6710 -0.9910 11 1 8.3519 2.3091 -0.0747 12 6 8.7156 3.0848 -2.0298 13 7 8.1765 3.5250 -3.1457 14 14 10.5740 3.0204 -1.8525 15 1 11.0706 1.7017 -2.3209 16 1 11.1869 4.0987 -2.6691 17 1 10.9420 3.2098 -0.4262 18 7 4.2266 -0.0825 0.0057 19 1 5.1949 -0.1389 0.0094 20 6 3.4748 -1.2117 0.0003 21 7 2.1718 -1.1609 -0.0052 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 1.6489 2.1171 -0.0004 26 1 6.0637 2.8371 0.9889 27 1 6.0689 1.1823 0.3330 28 1 4.8946 1.8809 -2.4135 29 1 6.4439 2.2081 -3.2260 30 1 6.2911 0.8150 -2.1283 31 1 6.2786 4.7923 -0.5517 32 1 6.4372 4.5306 -2.3049 33 1 4.8872 4.2037 -1.4929 34 1 8.7438 3.8166 -3.8765 35 1 3.9661 -2.1735 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413404062.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:37 Heat of formation + Delta-G solvation = 54.833782 kcal Electronic energy + Delta-G solvation = -16634.174236 eV Core-core repulsion = 14053.672368 eV Total energy + Delta-G solvation = -2580.501868 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.62476 -36.80444 -34.85511 -33.56927 -31.49636 -30.01592 -28.32181 -25.59250 -25.29060 -24.56921 -23.87427 -21.06963 -18.64254 -18.43155 -16.92724 -15.98370 -15.72148 -14.99429 -14.64990 -14.03813 -13.92108 -13.36957 -12.97016 -12.89332 -12.29932 -12.21490 -11.89872 -11.50161 -11.16888 -10.91856 -10.72373 -10.65265 -10.28443 -10.13826 -10.03418 -9.75543 -9.46603 -9.25329 -8.95091 -8.48699 -8.31601 -7.03882 -5.95054 -4.07513 1.05529 2.30039 3.17868 3.27082 3.34782 3.37373 3.92371 4.25476 4.39588 4.66716 5.04231 5.29414 5.46187 5.54771 5.61136 5.66351 5.96421 6.03145 6.11405 6.39354 6.50760 6.62077 6.81672 6.87178 7.11490 7.13660 7.30697 7.38366 7.48426 7.70376 7.75543 8.11918 8.15883 8.27407 8.46710 8.64296 8.94560 9.57980 11.04807 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.048349 B = 0.005798 C = 0.005546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.980649 B = 4828.207628 C = 5047.709926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.128 3.872 3 C -0.193 4.193 4 C 0.366 3.634 5 N -0.555 5.555 6 C 0.065 3.935 7 C 0.073 3.927 8 C -0.125 4.125 9 C -0.119 4.119 10 C -0.511 4.511 11 H 0.052 0.948 12 C 0.066 3.934 13 N -0.883 5.883 14 Si 0.890 3.110 15 H -0.282 1.282 16 H -0.286 1.286 17 H -0.275 1.275 18 N -0.661 5.661 19 H 0.419 0.581 20 C 0.379 3.621 21 N -0.566 5.566 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.144 0.856 26 H 0.069 0.931 27 H 0.013 0.987 28 H 0.009 0.991 29 H 0.082 0.918 30 H 0.012 0.988 31 H 0.019 0.981 32 H 0.075 0.925 33 H 0.019 0.981 34 H 0.259 0.741 35 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.185 -8.431 5.142 14.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.011 3.989 3 C -0.218 4.218 4 C 0.097 3.903 5 N -0.279 5.279 6 C -0.065 4.065 7 C 0.072 3.928 8 C -0.183 4.183 9 C -0.177 4.177 10 C -0.550 4.550 11 H 0.070 0.930 12 C -0.135 4.135 13 N -0.522 5.522 14 Si 0.718 3.282 15 H -0.208 1.208 16 H -0.212 1.212 17 H -0.200 1.200 18 N -0.291 5.291 19 H 0.259 0.741 20 C 0.090 3.910 21 N -0.290 5.290 22 H 0.094 0.906 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.162 0.838 26 H 0.087 0.913 27 H 0.031 0.969 28 H 0.028 0.972 29 H 0.101 0.899 30 H 0.031 0.969 31 H 0.038 0.962 32 H 0.094 0.906 33 H 0.038 0.962 34 H 0.069 0.931 35 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -10.792 -7.883 4.911 14.238 hybrid contribution 2.519 -0.106 0.061 2.522 sum -8.272 -7.989 4.972 12.529 Atomic orbital electron populations 1.20621 0.88964 1.03058 1.02833 1.20594 0.96640 0.87969 0.93710 1.21243 0.90291 0.99704 1.10573 1.20262 0.93435 0.80845 0.95766 1.73229 1.09646 1.21125 1.23922 1.22224 0.85483 0.97404 1.01364 1.18131 0.93362 0.92880 0.88398 1.21768 0.96237 0.97089 1.03220 1.21633 0.96986 0.97529 1.01569 1.21109 0.90484 1.43056 1.00325 0.92957 1.24901 0.98330 0.95000 0.95289 1.69842 1.34486 1.43249 1.04596 0.86635 0.85916 0.77601 0.78046 1.20839 1.21213 1.20010 1.44462 1.12233 1.06841 1.65610 0.74057 1.24752 0.88304 0.91200 0.86703 1.67953 1.06187 1.28844 1.26026 0.90600 0.90798 0.90833 0.83823 0.91322 0.96867 0.97207 0.89889 0.96869 0.96169 0.90612 0.96178 0.93095 0.78975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 10.17 36.00 0.37 -0.60 16 2 C 0.13 1.72 6.76 -82.67 -0.56 1.16 16 3 C -0.19 -2.97 9.70 -39.07 -0.38 -3.34 16 4 C 0.37 6.43 7.32 -155.64 -1.14 5.29 16 5 N -0.55 -11.46 9.08 -60.06 -0.55 -12.01 16 6 C 0.06 1.42 5.12 -4.04 -0.02 1.40 16 7 C 0.07 1.83 0.57 -155.66 -0.09 1.74 16 8 C -0.13 -3.09 8.09 37.16 0.30 -2.79 16 9 C -0.12 -3.08 8.09 37.16 0.30 -2.78 16 10 C -0.51 -13.77 8.01 -34.44 -0.28 -14.04 16 11 H 0.05 1.39 7.74 -52.48 -0.41 0.98 16 12 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 13 N -0.88 -24.71 9.35 55.43 0.52 -24.19 16 14 Si 0.89 20.99 29.54 -169.99 -5.02 15.96 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 N -0.66 -9.56 5.28 -13.08 -0.07 -9.63 16 19 H 0.42 5.93 6.40 -40.82 -0.26 5.67 16 20 C 0.38 4.44 12.40 -89.89 -1.11 3.33 16 21 N -0.57 -7.54 10.29 -10.60 -0.11 -7.64 16 22 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 25 H 0.14 2.07 8.06 -52.49 -0.42 1.65 16 26 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 27 H 0.01 0.26 5.59 -51.93 -0.29 -0.03 16 28 H 0.01 0.22 7.45 -51.93 -0.39 -0.17 16 29 H 0.08 2.26 6.07 -51.93 -0.32 1.94 16 30 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.08 2.10 6.07 -51.93 -0.32 1.79 16 33 H 0.02 0.49 7.60 -51.93 -0.39 0.09 16 34 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.19 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 286.39 15.07 4.32 4.32 Total: -1.00 -30.98 286.39 -8.50 -39.47 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -4.88 Total: 2.66 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -2.70 Total: -8.94 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.21 Total: -53.48 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.98 -8.50 -39.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413404062.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.305 kcal (2) G-P(sol) polarization free energy of solvation -30.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds