Wall clock time and date at job start Sun Mar 29 2020 21:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35650 * 119.79124 * 2 1 4 4 C 1.41981 * 118.60068 * 179.72369 * 3 2 1 5 5 N 1.31473 * 120.92017 * 180.29983 * 4 3 2 6 6 C 1.46506 * 120.00201 * 173.98525 * 5 4 3 7 7 C 1.53000 * 109.47352 * 114.57065 * 6 5 4 8 8 C 1.52999 * 109.46780 * 299.99952 * 7 6 5 9 9 C 1.53006 * 109.46852 * 59.99779 * 7 6 5 10 10 C 1.50696 * 109.47058 * 179.97438 * 7 6 5 11 11 H 1.08005 * 119.99902 * 0.02562 * 10 7 6 12 12 C 1.37873 * 120.00119 * 179.97438 * 10 7 6 13 13 N 1.31520 * 120.00090 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 120.00335 * 180.02562 * 12 10 7 15 15 H 1.48497 * 109.47343 * 90.00141 * 14 12 10 16 16 H 1.48501 * 109.47050 * 210.00460 * 14 12 10 17 17 H 1.48506 * 109.46720 * 329.99948 * 14 12 10 18 18 N 1.38039 * 118.16526 * 0.27530 * 4 3 2 19 19 H 0.97000 * 120.31294 * 179.97438 * 18 4 3 20 20 C 1.35662 * 119.37255 * 359.97438 * 18 4 3 21 21 N 1.30405 * 121.41749 * 0.02773 * 20 18 4 22 22 H 1.09002 * 109.46888 * 90.00401 * 1 2 3 23 23 H 1.09005 * 109.47001 * 210.00114 * 1 2 3 24 24 H 1.09002 * 109.47667 * 329.99978 * 1 2 3 25 25 H 1.07998 * 120.69756 * 359.97438 * 3 2 1 26 26 H 1.09003 * 109.46617 * 234.56938 * 6 5 4 27 27 H 1.09002 * 109.46794 * 354.56818 * 6 5 4 28 28 H 1.08995 * 109.47198 * 60.00260 * 8 7 6 29 29 H 1.09006 * 109.46871 * 179.97438 * 8 7 6 30 30 H 1.08990 * 109.47143 * 299.99814 * 8 7 6 31 31 H 1.09001 * 109.46930 * 60.00040 * 9 7 6 32 32 H 1.08996 * 109.46598 * 179.97438 * 9 7 6 33 33 H 1.08995 * 109.47573 * 300.00013 * 9 7 6 34 34 H 0.96995 * 120.00496 * 179.97438 * 13 12 10 35 35 H 1.07995 * 119.28888 * 180.02562 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1809 1.1772 0.0000 4 6 3.6004 1.1477 0.0060 5 7 4.2993 2.2613 0.0122 6 6 5.7568 2.2108 0.1512 7 6 6.4099 2.7224 -1.1343 8 6 5.9789 1.8433 -2.3100 9 6 5.9716 4.1660 -1.3894 10 6 7.9091 2.6710 -0.9910 11 1 8.3519 2.3091 -0.0747 12 6 8.7156 3.0848 -2.0298 13 7 8.1765 3.5250 -3.1457 14 14 10.5740 3.0204 -1.8525 15 1 11.0706 1.7017 -2.3209 16 1 11.1869 4.0987 -2.6691 17 1 10.9420 3.2098 -0.4262 18 7 4.2266 -0.0825 0.0057 19 1 5.1949 -0.1389 0.0094 20 6 3.4748 -1.2117 0.0003 21 7 2.1718 -1.1609 -0.0052 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 1.6489 2.1171 -0.0004 26 1 6.0637 2.8371 0.9889 27 1 6.0689 1.1823 0.3330 28 1 4.8946 1.8809 -2.4135 29 1 6.4439 2.2081 -3.2260 30 1 6.2911 0.8150 -2.1283 31 1 6.2786 4.7923 -0.5517 32 1 6.4372 4.5306 -2.3049 33 1 4.8872 4.2037 -1.4929 34 1 8.7438 3.8166 -3.8765 35 1 3.9661 -2.1735 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413404062.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:36 Heat of formation + Delta-G solvation = 36.470778 kcal Electronic energy + Delta-G solvation = -16634.970515 eV Core-core repulsion = 14053.672368 eV Total energy + Delta-G solvation = -2581.298147 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.79796 -38.45975 -36.30718 -34.84660 -33.30516 -31.32593 -29.51399 -27.61113 -27.31132 -26.16408 -24.92432 -22.41326 -20.41973 -19.61628 -18.19597 -17.92558 -16.84232 -16.77972 -16.02122 -15.42355 -15.08214 -15.00423 -14.61392 -14.16105 -13.93289 -13.34967 -13.28608 -13.05561 -12.94297 -12.73647 -12.51480 -12.33102 -12.18676 -12.13171 -11.46834 -11.34094 -10.96313 -10.85852 -10.72713 -10.41098 -10.08385 -8.38670 -7.98594 -6.19638 -0.02304 1.07689 1.41082 1.43513 1.52391 2.02008 2.43808 2.77244 3.21364 3.34831 3.48420 4.08961 4.25259 4.41586 4.57309 4.64780 4.67797 4.74964 4.86979 4.88301 4.98500 5.10727 5.12090 5.16490 5.34119 5.40044 5.45630 5.62067 5.63722 5.70677 6.07688 6.11536 6.25489 6.43623 6.87551 7.07045 7.28318 7.49219 8.98133 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.048349 B = 0.005798 C = 0.005546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.980649 B = 4828.207628 C = 5047.709926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.150 3.850 3 C -0.235 4.235 4 C 0.376 3.624 5 N -0.608 5.608 6 C 0.080 3.920 7 C 0.064 3.936 8 C -0.105 4.105 9 C -0.106 4.106 10 C -0.527 4.527 11 H 0.051 0.949 12 C 0.021 3.979 13 N -0.907 5.907 14 Si 0.951 3.049 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.271 1.271 18 N -0.660 5.660 19 H 0.421 0.579 20 C 0.389 3.611 21 N -0.578 5.578 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.145 0.855 26 H 0.050 0.950 27 H 0.027 0.973 28 H 0.009 0.991 29 H 0.054 0.946 30 H 0.022 0.978 31 H 0.011 0.989 32 H 0.051 0.949 33 H 0.020 0.980 34 H 0.258 0.742 35 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.783 -10.661 5.716 16.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.032 3.968 3 C -0.261 4.261 4 C 0.109 3.891 5 N -0.336 5.336 6 C -0.050 4.050 7 C 0.063 3.937 8 C -0.163 4.163 9 C -0.164 4.164 10 C -0.566 4.566 11 H 0.069 0.931 12 C -0.178 4.178 13 N -0.546 5.546 14 Si 0.778 3.222 15 H -0.200 1.200 16 H -0.213 1.213 17 H -0.196 1.196 18 N -0.289 5.289 19 H 0.262 0.738 20 C 0.103 3.897 21 N -0.302 5.302 22 H 0.107 0.893 23 H 0.104 0.896 24 H 0.107 0.893 25 H 0.162 0.838 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.028 0.972 29 H 0.073 0.927 30 H 0.041 0.959 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.039 0.961 34 H 0.068 0.932 35 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -11.394 -10.162 5.494 16.225 hybrid contribution 2.545 0.417 -0.109 2.581 sum -8.849 -9.745 5.385 14.222 Atomic orbital electron populations 1.20756 0.86329 1.04411 1.03976 1.21167 0.98441 0.87305 0.89873 1.21304 0.89434 1.00781 1.14562 1.20607 0.94273 0.81256 0.92998 1.73226 1.08282 1.22836 1.29227 1.21819 0.86922 0.97516 0.98731 1.18173 0.92925 0.92303 0.90320 1.21511 0.95752 0.97321 1.01721 1.21473 0.96686 0.98384 0.99847 1.21408 0.91770 1.43093 1.00286 0.93065 1.25620 1.02426 0.94739 0.95030 1.69990 1.35750 1.43746 1.05111 0.85666 0.80937 0.77661 0.77976 1.20031 1.21313 1.19604 1.44581 1.12628 1.06880 1.64814 0.73827 1.25868 0.87999 0.91963 0.83911 1.68114 1.06903 1.28515 1.26644 0.89335 0.89630 0.89342 0.83751 0.93195 0.95493 0.97222 0.92730 0.95909 0.96933 0.93036 0.96064 0.93249 0.73801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.63 10.17 71.23 0.72 -0.91 16 2 C 0.15 3.68 6.76 41.66 0.28 3.97 16 3 C -0.24 -6.98 9.70 22.60 0.22 -6.76 16 4 C 0.38 12.92 7.32 134.38 0.98 13.90 16 5 N -0.61 -25.35 9.08 -343.92 -3.12 -28.47 16 6 C 0.08 3.54 5.12 86.38 0.44 3.98 16 7 C 0.06 3.22 0.57 -52.93 -0.03 3.19 16 8 C -0.11 -5.22 8.09 71.98 0.58 -4.64 16 9 C -0.11 -5.64 8.09 71.98 0.58 -5.06 16 10 C -0.53 -28.57 8.01 25.60 0.21 -28.36 16 11 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 12 C 0.02 1.14 5.15 84.65 0.44 1.57 16 13 N -0.91 -51.56 9.35 21.45 0.20 -51.36 16 14 Si 0.95 43.06 29.54 68.60 2.03 45.09 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 16 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 18 N -0.66 -17.72 5.28 -195.29 -1.03 -18.75 16 19 H 0.42 11.08 6.40 -92.71 -0.59 10.48 16 20 C 0.39 7.73 12.40 180.09 2.23 9.96 16 21 N -0.58 -13.45 10.29 -187.46 -1.93 -15.37 16 22 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 24 H 0.09 1.24 8.07 -2.39 -0.02 1.22 16 25 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 26 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.03 1.07 5.59 -2.39 -0.01 1.05 16 28 H 0.01 0.43 7.45 -2.39 -0.02 0.41 16 29 H 0.05 3.01 6.07 -2.38 -0.01 3.00 16 30 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 2.95 6.07 -2.39 -0.01 2.94 16 33 H 0.02 1.07 7.60 -2.39 -0.02 1.05 16 34 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 35 H 0.25 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -67.38 286.39 3.30 -64.09 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.49 Total: 13.93 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 6.66 Total: -9.16 kcal Atomic # 7 Polarization: -108.07 SS G_CDS: -5.88 Total: -113.95 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -67.38 3.30 -64.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413404062.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.558 kcal (2) G-P(sol) polarization free energy of solvation -67.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds