Wall clock time and date at job start Sun Mar 29 2020 21:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30414 * 119.28772 * 2 1 4 4 C 1.33782 * 122.02495 * 180.02562 * 3 2 1 5 5 C 1.35644 * 120.41350 * 359.97438 * 4 3 2 6 6 C 1.41975 * 118.60218 * 0.02562 * 5 4 3 7 7 N 1.31482 * 120.91909 * 179.97438 * 6 5 4 8 8 C 1.46499 * 119.99839 * 353.71704 * 7 6 5 9 9 C 1.53001 * 109.46732 * 114.38571 * 8 7 6 10 10 C 1.52996 * 109.47370 * 300.00183 * 9 8 7 11 11 C 1.53007 * 109.47172 * 60.00266 * 9 8 7 12 12 C 1.50706 * 109.47031 * 179.97438 * 9 8 7 13 13 H 1.08003 * 119.99805 * 0.02562 * 12 9 8 14 14 C 1.37877 * 120.00005 * 180.02562 * 12 9 8 15 15 N 1.31508 * 120.00225 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 119.99793 * 180.02562 * 14 12 9 17 17 H 1.48506 * 109.47236 * 59.99774 * 16 14 12 18 18 H 1.48491 * 109.47244 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47228 * 300.00169 * 16 14 12 20 20 N 1.35659 * 119.29298 * 180.26746 * 2 1 3 21 21 H 0.96996 * 120.31330 * 0.02562 * 20 2 1 22 22 H 1.09000 * 109.47258 * 89.99709 * 1 2 3 23 23 H 1.09004 * 109.46537 * 209.99603 * 1 2 3 24 24 H 1.08996 * 109.46928 * 329.99184 * 1 2 3 25 25 H 1.08000 * 119.78689 * 180.02562 * 4 3 2 26 26 H 1.08001 * 120.69372 * 180.02562 * 5 4 3 27 27 H 1.08993 * 109.47429 * 234.38504 * 8 7 6 28 28 H 1.09003 * 109.47144 * 354.38899 * 8 7 6 29 29 H 1.08996 * 109.47482 * 60.00018 * 10 9 8 30 30 H 1.09006 * 109.47239 * 180.02562 * 10 9 8 31 31 H 1.08996 * 109.46945 * 299.99655 * 10 9 8 32 32 H 1.09001 * 109.47061 * 59.99697 * 11 9 8 33 33 H 1.08998 * 109.47268 * 179.97438 * 11 9 8 34 34 H 1.08995 * 109.46886 * 300.00038 * 11 9 8 35 35 H 0.96998 * 120.00266 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1450 1.1374 0.0000 4 6 3.4813 1.2013 -0.0005 5 6 4.2231 0.0657 -0.0005 6 6 3.5511 -1.1850 -0.0005 7 7 4.2250 -2.3140 -0.0011 8 6 5.6833 -2.2965 -0.1405 9 6 6.3250 -2.8116 1.1494 10 6 5.9136 -1.9137 2.3177 11 6 5.8554 -4.2432 1.4163 12 6 7.8251 -2.7943 1.0058 13 1 8.2757 -2.4498 0.0866 14 6 8.6224 -3.2181 2.0478 15 7 8.0738 -3.6380 3.1668 16 14 10.4818 -3.1959 1.8701 17 1 10.9378 -1.8064 1.6116 18 1 11.1047 -3.6971 3.1214 19 1 10.8811 -4.0670 0.7355 20 7 2.1708 -1.1831 -0.0055 21 1 1.6800 -2.0198 -0.0098 22 1 -0.3634 0.0001 -1.0277 23 1 -0.3632 -0.8901 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 3.9725 2.1632 -0.0001 26 1 5.3021 0.1120 -0.0005 27 1 5.9764 -2.9363 -0.9728 28 1 6.0179 -1.2767 -0.3307 29 1 4.8286 -1.9266 2.4215 30 1 6.3712 -2.2804 3.2366 31 1 6.2482 -0.8939 2.1276 32 1 6.1485 -4.8829 0.5839 33 1 6.3129 -4.6103 2.3350 34 1 4.7704 -4.2561 1.5200 35 1 8.6346 -3.9358 3.9001 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413405819.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:51 Heat of formation + Delta-G solvation = 58.663352 kcal Electronic energy + Delta-G solvation = -16629.292972 eV Core-core repulsion = 14048.957166 eV Total energy + Delta-G solvation = -2580.335805 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.62364 -36.70927 -34.49574 -33.95057 -31.64589 -30.03216 -28.18106 -25.56352 -25.34668 -24.84470 -23.51914 -21.17835 -18.39862 -18.21083 -17.15147 -15.94312 -15.49558 -15.20600 -14.67434 -14.26448 -13.78387 -13.32329 -12.87811 -12.76300 -12.50022 -12.27186 -12.06896 -11.43687 -11.11546 -11.00190 -10.70072 -10.63210 -10.18455 -10.11267 -10.06415 -9.73227 -9.34458 -9.13524 -8.78506 -8.34334 -8.21930 -7.02264 -5.88346 -3.99969 1.04549 2.32116 2.92250 3.34114 3.38747 3.41378 3.94412 4.10182 4.46550 4.76206 5.14762 5.19418 5.24239 5.36143 5.51701 5.58833 5.69658 6.17148 6.29343 6.40426 6.63511 6.76676 6.93686 6.99385 7.18859 7.24800 7.32517 7.42352 7.56086 7.78299 7.82036 8.16906 8.20527 8.33778 8.53084 8.66883 9.01771 9.64815 11.11641 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.048385 B = 0.005792 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.556362 B = 4832.746029 C = 5051.587483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.396 3.604 3 N -0.564 5.564 4 C 0.108 3.892 5 C -0.244 4.244 6 C 0.363 3.637 7 N -0.572 5.572 8 C 0.076 3.924 9 C 0.073 3.927 10 C -0.123 4.123 11 C -0.119 4.119 12 C -0.508 4.508 13 H 0.052 0.948 14 C 0.066 3.934 15 N -0.885 5.885 16 Si 0.890 3.110 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 N -0.619 5.619 21 H 0.415 0.585 22 H 0.093 0.907 23 H 0.083 0.917 24 H 0.099 0.901 25 H 0.152 0.848 26 H 0.150 0.850 27 H 0.065 0.935 28 H 0.032 0.968 29 H 0.006 0.994 30 H 0.080 0.920 31 H 0.017 0.983 32 H 0.018 0.982 33 H 0.075 0.925 34 H 0.016 0.984 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.557 6.681 -5.278 16.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.129 3.871 3 N -0.290 5.290 4 C -0.028 4.028 5 C -0.271 4.271 6 C 0.092 3.908 7 N -0.296 5.296 8 C -0.053 4.053 9 C 0.072 3.928 10 C -0.181 4.181 11 C -0.176 4.176 12 C -0.547 4.547 13 H 0.070 0.930 14 C -0.135 4.135 15 N -0.524 5.524 16 Si 0.718 3.282 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.204 1.204 20 N -0.244 5.244 21 H 0.252 0.748 22 H 0.112 0.888 23 H 0.101 0.899 24 H 0.118 0.882 25 H 0.169 0.831 26 H 0.167 0.833 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.025 0.975 30 H 0.099 0.901 31 H 0.036 0.964 32 H 0.037 0.963 33 H 0.093 0.907 34 H 0.035 0.965 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.653 6.471 -5.043 15.928 hybrid contribution 1.943 -0.319 -0.043 1.970 sum -11.710 6.152 -5.086 14.171 Atomic orbital electron populations 1.20860 0.85754 1.05073 1.04594 1.23037 0.95593 0.81012 0.87442 1.67983 1.10754 1.23809 1.26444 1.22044 0.88595 0.98605 0.93531 1.22594 1.02654 0.92157 1.09685 1.18914 0.83300 0.91874 0.96749 1.72241 1.11362 1.23695 1.22269 1.22311 0.83253 0.98983 1.00754 1.18125 0.93382 0.92568 0.88684 1.21737 0.95902 0.97536 1.02927 1.21642 0.96625 0.97831 1.01545 1.21082 0.90544 1.43043 1.00012 0.92953 1.24892 0.98244 0.95113 0.95289 1.69834 1.34554 1.43680 1.04311 0.86701 0.85939 0.78290 0.77270 1.20409 1.21354 1.20365 1.42667 1.05767 1.09354 1.66627 0.74762 0.88839 0.89852 0.88196 0.83089 0.83258 0.91651 0.94988 0.97544 0.90139 0.96407 0.96250 0.90665 0.96501 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.67 10.26 36.01 0.37 -0.30 16 2 C 0.40 4.67 7.74 -154.92 -1.20 3.47 16 3 N -0.56 -7.83 10.26 -10.54 -0.11 -7.94 16 4 C 0.11 1.58 11.16 -17.63 -0.20 1.39 16 5 C -0.24 -4.18 9.24 -39.08 -0.36 -4.54 16 6 C 0.36 6.51 7.53 -155.64 -1.17 5.34 16 7 N -0.57 -11.92 9.18 -60.07 -0.55 -12.47 16 8 C 0.08 1.75 5.03 -4.04 -0.02 1.73 16 9 C 0.07 1.89 0.57 -155.66 -0.09 1.80 16 10 C -0.12 -3.16 8.09 37.16 0.30 -2.86 16 11 C -0.12 -3.09 8.09 37.16 0.30 -2.79 16 12 C -0.51 -14.10 8.01 -34.44 -0.28 -14.37 16 13 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 14 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 15 N -0.89 -25.23 9.35 55.43 0.52 -24.71 16 16 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 N -0.62 -8.41 5.42 -9.29 -0.05 -8.46 16 21 H 0.41 4.65 8.82 -40.82 -0.36 4.29 16 22 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.15 1.83 8.06 -52.49 -0.42 1.40 16 26 H 0.15 2.69 5.90 -52.49 -0.31 2.38 16 27 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 28 H 0.03 0.71 5.30 -51.93 -0.28 0.43 16 29 H 0.01 0.14 7.44 -51.93 -0.39 -0.25 16 30 H 0.08 2.25 6.07 -51.93 -0.32 1.94 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 2.11 6.07 -51.93 -0.32 1.80 16 34 H 0.02 0.40 7.60 -51.93 -0.39 0.01 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 286.11 15.07 4.31 4.31 Total: -1.00 -31.97 286.11 -8.19 -40.16 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -4.86 Total: 2.08 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -2.44 Total: -9.42 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: -0.19 Total: -53.58 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.97 -8.19 -40.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413405819.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.822 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds