Wall clock time and date at job start Sun Mar 29 2020 22:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47457 * 2 1 4 4 C 1.50702 * 109.47214 * 120.00287 * 2 1 3 5 5 N 1.31801 * 119.12335 * 120.00238 * 4 2 1 6 6 C 1.32330 * 120.81828 * 180.02562 * 5 4 2 7 7 C 1.38603 * 119.10411 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.79951 * 180.02562 * 7 6 5 9 9 N 1.46507 * 109.46552 * 90.00191 * 8 7 6 10 10 C 1.46499 * 119.99854 * 90.00256 * 9 8 7 11 11 C 1.36933 * 120.00050 * 269.99500 * 9 8 7 12 12 H 1.08002 * 119.99823 * 141.98877 * 11 9 8 13 13 C 1.38809 * 120.00330 * 321.98831 * 11 9 8 14 14 N 1.31621 * 120.00062 * 157.11193 * 13 11 9 15 15 Si 1.86797 * 120.00052 * 337.11823 * 13 11 9 16 16 H 1.48507 * 109.47040 * 95.67346 * 15 13 11 17 17 H 1.48500 * 109.47148 * 215.66994 * 15 13 11 18 18 H 1.48498 * 109.47231 * 335.67527 * 15 13 11 19 19 C 1.38592 * 118.39900 * 0.27866 * 7 6 5 20 20 N 1.31795 * 119.12174 * 300.02058 * 4 2 1 21 21 H 1.09003 * 109.46898 * 300.00013 * 1 2 3 22 22 H 1.08995 * 109.47147 * 59.99630 * 1 2 3 23 23 H 1.08996 * 109.47096 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47299 * 240.00297 * 2 1 3 25 25 H 1.09000 * 109.47363 * 180.02562 * 3 2 1 26 26 H 1.08995 * 109.47245 * 300.00311 * 3 2 1 27 27 H 1.09000 * 109.46624 * 59.99883 * 3 2 1 28 28 H 1.08000 * 120.44728 * 179.97438 * 6 5 4 29 29 H 1.09000 * 109.47467 * 330.00940 * 8 7 6 30 30 H 1.08991 * 109.47175 * 210.00293 * 8 7 6 31 31 H 1.09009 * 109.47097 * 85.64652 * 10 9 8 32 32 H 1.09000 * 109.46943 * 325.64828 * 10 9 8 33 33 H 1.08997 * 109.47369 * 205.64980 * 10 9 8 34 34 H 0.97001 * 119.99997 * 179.97438 * 14 13 11 35 35 H 1.07995 * 120.44871 * 179.72428 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 2.7889 -1.7804 1.0894 6 6 3.2479 -2.4304 2.1467 7 6 2.9232 -1.9713 3.4136 8 6 3.4256 -2.6818 4.6440 9 7 4.7161 -2.1143 5.0427 10 6 4.7631 -0.9849 5.9746 11 6 5.8783 -2.6397 4.5444 12 1 6.7008 -1.9872 4.2909 13 6 5.9994 -4.0108 4.3651 14 7 6.8745 -4.4873 3.5051 15 14 4.9204 -5.1797 5.3442 16 1 3.7316 -5.5509 4.5353 17 1 5.6927 -6.4031 5.6792 18 1 4.4790 -4.5146 6.5963 19 6 2.1210 -0.8463 3.5215 20 7 1.7030 -0.2456 2.4189 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.8671 -3.3067 2.0242 29 1 3.5469 -3.7430 4.4268 30 1 2.7076 -2.5565 5.4544 31 1 4.7402 -1.3577 6.9987 32 1 3.9031 -0.3373 5.8043 33 1 5.6811 -0.4195 5.8142 34 1 6.9594 -5.4455 3.3801 35 1 1.8440 -0.4627 4.4923 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440456372.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:44 Heat of formation + Delta-G solvation = 61.013445 kcal Electronic energy + Delta-G solvation = -16678.907996 eV Core-core repulsion = 14098.674099 eV Total energy + Delta-G solvation = -2580.233897 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.62094 -36.47361 -35.06567 -33.15334 -31.95825 -30.96465 -27.08637 -26.88568 -25.94124 -24.06181 -23.10775 -21.12663 -20.38089 -17.26853 -17.01158 -16.24045 -15.38745 -14.62995 -14.25140 -14.15030 -13.97018 -13.73693 -13.03720 -12.92515 -12.74579 -12.67453 -12.08980 -12.05824 -11.58835 -11.44250 -11.12442 -10.90473 -10.82310 -10.68813 -10.39403 -10.23929 -10.08099 -9.79167 -8.70303 -8.68198 -8.63107 -6.99642 -6.13821 -3.55010 1.44043 1.63903 3.19508 3.38139 3.42428 4.19741 4.25323 4.39096 4.60142 5.01103 5.11741 5.22863 5.25979 5.27049 5.33032 5.47868 5.56533 5.68637 5.82526 5.91472 5.93646 6.06607 6.13492 6.15759 6.28440 6.29605 6.37592 6.55180 6.60877 6.65418 6.98263 7.51692 7.89229 8.24844 8.60999 8.81475 9.54688 9.94716 11.00768 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.034635 B = 0.007108 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.238619 B = 3938.388844 C = 4133.895686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.022 4.022 3 C -0.138 4.138 4 C 0.295 3.705 5 N -0.519 5.519 6 C 0.167 3.833 7 C -0.184 4.184 8 C 0.176 3.824 9 N -0.602 5.602 10 C 0.124 3.876 11 C -0.273 4.273 12 H 0.079 0.921 13 C 0.039 3.961 14 N -0.890 5.890 15 Si 0.872 3.128 16 H -0.283 1.283 17 H -0.297 1.297 18 H -0.267 1.267 19 C 0.140 3.860 20 N -0.519 5.519 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.051 0.949 24 H 0.090 0.910 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.168 0.832 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.013 0.987 32 H 0.027 0.973 33 H 0.046 0.954 34 H 0.266 0.734 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.438 7.073 -2.496 13.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.043 4.043 3 C -0.197 4.197 4 C 0.026 3.974 5 N -0.232 5.232 6 C 0.001 3.999 7 C -0.192 4.192 8 C 0.049 3.951 9 N -0.324 5.324 10 C -0.021 4.021 11 C -0.402 4.402 12 H 0.096 0.904 13 C -0.163 4.163 14 N -0.529 5.529 15 Si 0.702 3.298 16 H -0.211 1.211 17 H -0.225 1.225 18 H -0.192 1.192 19 C -0.027 4.027 20 N -0.232 5.232 21 H 0.084 0.916 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.109 0.891 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.185 0.815 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.031 0.969 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.615 7.399 -3.329 14.168 hybrid contribution 0.023 -1.271 1.318 1.831 sum -11.592 6.127 -2.011 13.265 Atomic orbital electron populations 1.21761 0.93700 1.01813 1.02287 1.19832 0.96023 0.95582 0.92827 1.21764 1.01086 0.94571 1.02232 1.22879 0.91733 0.90020 0.92749 1.68222 1.11111 1.08618 1.35278 1.23186 0.92218 0.97356 0.87148 1.22707 0.97419 0.99251 0.99802 1.20161 0.87895 0.96512 0.90515 1.44078 1.01244 1.37544 1.49537 1.21115 0.99232 0.89738 0.91984 1.18801 0.92673 0.90464 1.38228 0.90384 1.25483 0.96680 0.97013 0.97126 1.69890 1.37303 1.13520 1.32204 0.87011 0.79678 0.80775 0.82370 1.21088 1.22473 1.19151 1.22940 0.91881 0.90988 0.96874 1.68018 1.24199 1.32131 0.98888 0.91642 0.92143 0.93009 0.89130 0.92823 0.92142 0.91652 0.81520 0.91630 0.92612 0.96873 0.95425 0.93486 0.92404 0.82541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.09 37.15 0.34 -1.27 16 2 C -0.02 -0.31 3.25 -91.77 -0.30 -0.61 16 3 C -0.14 -1.71 9.09 37.16 0.34 -1.37 16 4 C 0.29 5.22 6.34 -157.19 -1.00 4.22 16 5 N -0.52 -10.30 10.31 -10.72 -0.11 -10.41 16 6 C 0.17 3.46 11.01 -17.20 -0.19 3.27 16 7 C -0.18 -3.60 5.50 -104.36 -0.57 -4.18 16 8 C 0.18 3.62 4.71 -5.19 -0.02 3.59 16 9 N -0.60 -13.78 2.45 -182.50 -0.45 -14.23 16 10 C 0.12 2.38 10.70 59.85 0.64 3.02 16 11 C -0.27 -7.36 9.88 -15.06 -0.15 -7.51 16 12 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 13 C 0.04 1.06 5.29 -17.43 -0.09 0.97 16 14 N -0.89 -25.98 13.97 55.49 0.78 -25.20 16 15 Si 0.87 21.00 25.10 -169.99 -4.27 16.73 16 16 H -0.28 -6.53 6.68 56.52 0.38 -6.16 16 17 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 C 0.14 2.43 11.01 -17.20 -0.19 2.24 16 20 N -0.52 -9.10 9.81 -10.72 -0.11 -9.20 16 21 H 0.06 0.79 8.01 -51.93 -0.42 0.38 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.09 1.23 8.10 -51.93 -0.42 0.81 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.84 8.01 -51.93 -0.42 0.42 16 28 H 0.17 3.62 8.06 -52.49 -0.42 3.19 16 29 H 0.07 1.46 3.34 -51.93 -0.17 1.29 16 30 H 0.06 0.99 8.03 -51.93 -0.42 0.57 16 31 H 0.01 0.24 8.14 -51.92 -0.42 -0.18 16 32 H 0.03 0.45 8.10 -51.93 -0.42 0.03 16 33 H 0.05 0.90 8.00 -51.93 -0.42 0.49 16 34 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.16 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 293.19 15.07 4.42 4.42 Total: -1.00 -29.78 293.19 -6.15 -35.93 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -5.22 Total: -0.42 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -1.20 Total: 2.39 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: 0.11 Total: -59.05 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.27 Total: 16.73 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.78 -6.15 -35.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440456372.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.945 kcal (2) G-P(sol) polarization free energy of solvation -29.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds