Wall clock time and date at job start Sun Mar 29 2020 22:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47457 * 2 1 4 4 C 1.50702 * 109.47214 * 120.00287 * 2 1 3 5 5 N 1.31801 * 119.12335 * 120.00238 * 4 2 1 6 6 C 1.32330 * 120.81828 * 180.02562 * 5 4 2 7 7 C 1.38603 * 119.10411 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.79951 * 180.02562 * 7 6 5 9 9 N 1.46507 * 109.46552 * 90.00191 * 8 7 6 10 10 C 1.46499 * 119.99854 * 90.00256 * 9 8 7 11 11 C 1.36933 * 120.00050 * 269.99500 * 9 8 7 12 12 H 1.08002 * 119.99823 * 141.98877 * 11 9 8 13 13 C 1.38809 * 120.00330 * 321.98831 * 11 9 8 14 14 N 1.31621 * 120.00062 * 157.11193 * 13 11 9 15 15 Si 1.86797 * 120.00052 * 337.11823 * 13 11 9 16 16 H 1.48507 * 109.47040 * 95.67346 * 15 13 11 17 17 H 1.48500 * 109.47148 * 215.66994 * 15 13 11 18 18 H 1.48498 * 109.47231 * 335.67527 * 15 13 11 19 19 C 1.38592 * 118.39900 * 0.27866 * 7 6 5 20 20 N 1.31795 * 119.12174 * 300.02058 * 4 2 1 21 21 H 1.09003 * 109.46898 * 300.00013 * 1 2 3 22 22 H 1.08995 * 109.47147 * 59.99630 * 1 2 3 23 23 H 1.08996 * 109.47096 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47299 * 240.00297 * 2 1 3 25 25 H 1.09000 * 109.47363 * 180.02562 * 3 2 1 26 26 H 1.08995 * 109.47245 * 300.00311 * 3 2 1 27 27 H 1.09000 * 109.46624 * 59.99883 * 3 2 1 28 28 H 1.08000 * 120.44728 * 179.97438 * 6 5 4 29 29 H 1.09000 * 109.47467 * 330.00940 * 8 7 6 30 30 H 1.08991 * 109.47175 * 210.00293 * 8 7 6 31 31 H 1.09009 * 109.47097 * 85.64652 * 10 9 8 32 32 H 1.09000 * 109.46943 * 325.64828 * 10 9 8 33 33 H 1.08997 * 109.47369 * 205.64980 * 10 9 8 34 34 H 0.97001 * 119.99997 * 179.97438 * 14 13 11 35 35 H 1.07995 * 120.44871 * 179.72428 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 2.7889 -1.7804 1.0894 6 6 3.2479 -2.4304 2.1467 7 6 2.9232 -1.9713 3.4136 8 6 3.4256 -2.6818 4.6440 9 7 4.7161 -2.1143 5.0427 10 6 4.7631 -0.9849 5.9746 11 6 5.8783 -2.6397 4.5444 12 1 6.7008 -1.9872 4.2909 13 6 5.9994 -4.0108 4.3651 14 7 6.8745 -4.4873 3.5051 15 14 4.9204 -5.1797 5.3442 16 1 3.7316 -5.5509 4.5353 17 1 5.6927 -6.4031 5.6792 18 1 4.4790 -4.5146 6.5963 19 6 2.1210 -0.8463 3.5215 20 7 1.7030 -0.2456 2.4189 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.8671 -3.3067 2.0242 29 1 3.5469 -3.7430 4.4268 30 1 2.7076 -2.5565 5.4544 31 1 4.7402 -1.3577 6.9987 32 1 3.9031 -0.3373 5.8043 33 1 5.6811 -0.4195 5.8142 34 1 6.9594 -5.4455 3.3801 35 1 1.8440 -0.4627 4.4923 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440456372.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:43 Heat of formation + Delta-G solvation = 42.361383 kcal Electronic energy + Delta-G solvation = -16679.716811 eV Core-core repulsion = 14098.674099 eV Total energy + Delta-G solvation = -2581.042712 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.06528 -38.09174 -36.34901 -34.62752 -33.90533 -32.51301 -28.43459 -28.02894 -27.72694 -25.54350 -24.58701 -22.86026 -21.65867 -18.96799 -18.69902 -17.60226 -17.23179 -16.12869 -15.86791 -15.53860 -15.33052 -14.93458 -14.81853 -14.62687 -14.34078 -13.78651 -13.75071 -13.22218 -12.97643 -12.74204 -12.60008 -12.42845 -12.12785 -12.11436 -11.84948 -11.73590 -11.71618 -11.64191 -10.70039 -10.17687 -10.13695 -8.85488 -8.24256 -5.63959 -0.01383 0.15147 1.29451 1.42265 1.52793 2.38384 2.73152 2.97557 3.06602 3.23160 3.48984 3.79264 3.92756 3.98931 4.10873 4.19346 4.22827 4.60630 4.63072 4.70566 4.71807 4.83400 4.87980 4.96493 5.02888 5.09165 5.09950 5.12846 5.34231 5.38427 5.56127 5.87856 6.05134 6.12676 6.91198 7.15879 7.55111 7.96656 8.94847 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.034635 B = 0.007108 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.238619 B = 3938.388844 C = 4133.895686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.027 4.027 3 C -0.132 4.132 4 C 0.292 3.708 5 N -0.541 5.541 6 C 0.147 3.853 7 C -0.195 4.195 8 C 0.176 3.824 9 N -0.615 5.615 10 C 0.121 3.879 11 C -0.266 4.266 12 H 0.033 0.967 13 C -0.012 4.012 14 N -0.941 5.941 15 Si 0.938 3.062 16 H -0.270 1.270 17 H -0.307 1.307 18 H -0.251 1.251 19 C 0.154 3.846 20 N -0.517 5.517 21 H 0.062 0.938 22 H 0.089 0.911 23 H 0.043 0.957 24 H 0.091 0.909 25 H 0.036 0.964 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.143 0.857 29 H 0.046 0.954 30 H 0.095 0.905 31 H 0.027 0.973 32 H 0.061 0.939 33 H 0.035 0.965 34 H 0.265 0.735 35 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.365 8.498 -1.652 16.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.047 4.047 3 C -0.190 4.190 4 C 0.024 3.976 5 N -0.255 5.255 6 C -0.018 4.018 7 C -0.202 4.202 8 C 0.050 3.950 9 N -0.338 5.338 10 C -0.022 4.022 11 C -0.395 4.395 12 H 0.051 0.949 13 C -0.210 4.210 14 N -0.584 5.584 15 Si 0.765 3.235 16 H -0.197 1.197 17 H -0.236 1.236 18 H -0.175 1.175 19 C -0.013 4.013 20 N -0.230 5.230 21 H 0.081 0.919 22 H 0.108 0.892 23 H 0.063 0.937 24 H 0.109 0.891 25 H 0.055 0.945 26 H 0.110 0.890 27 H 0.081 0.919 28 H 0.160 0.840 29 H 0.064 0.936 30 H 0.113 0.887 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -14.578 8.851 -2.477 17.233 hybrid contribution 0.900 -1.571 0.965 2.052 sum -13.678 7.279 -1.512 15.568 Atomic orbital electron populations 1.21718 0.91594 1.01781 1.03644 1.20072 0.97665 0.96003 0.91000 1.21735 0.99964 0.93638 1.03669 1.23729 0.90339 0.89144 0.94348 1.68240 1.12233 1.09793 1.35229 1.23011 0.92849 0.97440 0.88517 1.22601 0.98780 1.00195 0.98638 1.20200 0.87456 0.95284 0.92066 1.44182 1.00757 1.38350 1.50548 1.21239 1.00256 0.88939 0.91811 1.18583 0.93438 0.90083 1.37441 0.94902 1.26064 0.98495 0.98600 0.97832 1.70020 1.40294 1.13677 1.34400 0.85949 0.78175 0.78088 0.81255 1.19663 1.23552 1.17462 1.23508 0.89986 0.89446 0.98381 1.68180 1.24075 1.31828 0.98902 0.91879 0.89182 0.93732 0.89119 0.94519 0.89001 0.91923 0.83982 0.93638 0.88666 0.95450 0.92020 0.94654 0.92601 0.78701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.09 71.98 0.65 -1.98 16 2 C -0.03 -0.69 3.25 -11.54 -0.04 -0.73 16 3 C -0.13 -2.94 9.09 71.98 0.65 -2.28 16 4 C 0.29 9.95 6.34 138.75 0.88 10.82 16 5 N -0.54 -21.52 10.31 -187.84 -1.94 -23.46 16 6 C 0.15 6.18 11.01 84.70 0.93 7.11 16 7 C -0.20 -7.33 5.50 -19.69 -0.11 -7.44 16 8 C 0.18 6.84 4.71 85.63 0.40 7.24 16 9 N -0.62 -27.41 2.45 -731.31 -1.79 -29.20 16 10 C 0.12 4.36 10.70 127.77 1.37 5.72 16 11 C -0.27 -14.67 9.88 84.03 0.83 -13.84 16 12 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 13 C -0.01 -0.69 5.29 84.86 0.45 -0.25 16 14 N -0.94 -57.39 13.97 21.65 0.30 -57.09 16 15 Si 0.94 43.69 25.10 68.60 1.72 45.42 16 16 H -0.27 -11.85 6.68 99.48 0.66 -11.19 16 17 H -0.31 -14.67 7.11 99.48 0.71 -13.97 16 18 H -0.25 -10.94 7.11 99.48 0.71 -10.23 16 19 C 0.15 4.85 11.01 84.70 0.93 5.78 16 20 N -0.52 -16.75 9.81 -187.84 -1.84 -18.60 16 21 H 0.06 1.32 8.01 -2.39 -0.02 1.30 16 22 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.04 0.96 8.14 -2.39 -0.02 0.95 16 24 H 0.09 2.32 8.10 -2.39 -0.02 2.30 16 25 H 0.04 0.92 8.14 -2.39 -0.02 0.91 16 26 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.06 1.43 8.01 -2.39 -0.02 1.41 16 28 H 0.14 6.54 8.06 -2.91 -0.02 6.52 16 29 H 0.05 1.96 3.34 -2.39 -0.01 1.95 16 30 H 0.10 2.94 8.03 -2.39 -0.02 2.92 16 31 H 0.03 0.91 8.14 -2.38 -0.02 0.90 16 32 H 0.06 1.78 8.10 -2.39 -0.02 1.76 16 33 H 0.03 1.32 8.00 -2.39 -0.02 1.30 16 34 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 35 H 0.20 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -66.50 293.19 4.43 -62.07 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 1.02 Total: 10.69 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 6.96 Total: 10.17 kcal Atomic # 7 Polarization: -123.08 SS G_CDS: -5.27 Total: -128.35 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.72 Total: 45.42 kcal Total: -66.50 4.43 -62.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440456372.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.435 kcal (2) G-P(sol) polarization free energy of solvation -66.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds