Wall clock time and date at job start Sun Mar 29 2020 22:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00366 * 2 1 4 4 H 1.48500 * 109.47010 * 269.99877 * 3 2 1 5 5 H 1.48500 * 109.47354 * 30.00012 * 3 2 1 6 6 H 1.48502 * 109.47000 * 149.99924 * 3 2 1 7 7 C 1.38818 * 119.99488 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99585 * 160.27693 * 7 2 1 9 9 N 1.36933 * 120.00208 * 340.28191 * 7 2 1 10 10 C 1.46499 * 120.00293 * 320.53581 * 9 7 2 11 11 C 1.52995 * 109.46840 * 270.00032 * 10 9 7 12 12 C 1.50702 * 109.47401 * 179.97438 * 11 10 9 13 13 C 1.29441 * 117.96270 * 94.73122 * 12 11 10 14 14 C 1.50062 * 124.07681 * 180.24071 * 13 12 11 15 15 C 1.53019 * 110.20307 * 343.31707 * 14 13 12 16 16 C 1.53400 * 108.43423 * 49.24867 * 15 14 13 17 17 C 1.50071 * 117.96110 * 275.00142 * 12 11 10 18 18 C 1.46505 * 119.99881 * 140.53191 * 9 7 2 19 19 C 1.53000 * 117.49891 * 3.29143 * 18 9 7 20 20 C 1.53002 * 117.49868 * 294.66488 * 18 9 7 21 21 H 0.97001 * 119.99425 * 355.02345 * 1 2 3 22 22 H 1.09006 * 109.46785 * 29.99740 * 10 9 7 23 23 H 1.08996 * 109.47520 * 149.99813 * 10 9 7 24 24 H 1.09006 * 109.47193 * 299.99459 * 11 10 9 25 25 H 1.09004 * 109.47468 * 59.99453 * 11 10 9 26 26 H 1.08003 * 117.96079 * 0.47170 * 13 12 11 27 27 H 1.09003 * 109.48411 * 222.99491 * 14 13 12 28 28 H 1.09004 * 109.06765 * 103.38064 * 14 13 12 29 29 H 1.08997 * 109.64811 * 289.56663 * 15 14 13 30 30 H 1.08999 * 109.82020 * 169.02873 * 15 14 13 31 31 H 1.09005 * 109.63798 * 172.87941 * 16 15 14 32 32 H 1.08997 * 109.64299 * 52.24988 * 16 15 14 33 33 H 1.08996 * 109.35814 * 283.05082 * 17 12 11 34 34 H 1.09002 * 109.35618 * 42.77113 * 17 12 11 35 35 H 1.09002 * 115.55020 * 148.99964 * 18 9 7 36 36 H 1.08995 * 117.49803 * 359.97438 * 19 18 9 37 37 H 1.08993 * 117.50224 * 145.02248 * 19 18 9 38 38 H 1.08991 * 117.50106 * 214.97536 * 20 18 9 39 39 H 1.09001 * 117.49806 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2023 0.0005 8 1 3.0426 -1.2299 -0.3151 9 7 1.3857 -2.3532 0.4011 10 6 0.4639 -2.3283 1.5395 11 6 1.2391 -2.6033 2.8295 12 6 0.2911 -2.5772 4.0007 13 6 -0.2056 -3.7021 4.4048 14 6 -1.1643 -3.8344 5.5516 15 6 -1.1423 -2.5663 6.4077 16 6 -1.2855 -1.3526 5.4806 17 6 -0.0232 -1.2478 4.6220 18 6 1.6393 -3.6094 -0.3087 19 6 2.6697 -3.5863 -1.4395 20 6 1.1792 -3.7033 -1.7649 21 1 -0.4849 0.8369 0.0729 22 1 -0.0098 -1.3485 1.6021 23 1 -0.3006 -3.0935 1.4049 24 1 1.7128 -3.5831 2.7669 25 1 2.0036 -1.8381 2.9642 26 1 0.0913 -4.6020 3.8865 27 1 -0.8813 -4.6896 6.1653 28 1 -2.1696 -3.9882 5.1594 29 1 -0.1976 -2.5051 6.9479 30 1 -1.9696 -2.5849 7.1172 31 1 -1.3991 -0.4473 6.0771 32 1 -2.1561 -1.4832 4.8378 33 1 0.8133 -0.9338 5.2462 34 1 -0.1838 -0.5103 3.8355 35 1 1.5774 -4.5129 0.2979 36 1 3.1586 -2.6364 -1.6555 37 1 3.2861 -4.4746 -1.5770 38 1 0.8152 -4.6686 -2.1164 39 1 0.6875 -2.8306 -2.1946 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450341106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:24 Heat of formation + Delta-G solvation = 36.120363 kcal Electronic energy + Delta-G solvation = -16981.123867 eV Core-core repulsion = 14503.350868 eV Total energy + Delta-G solvation = -2477.772999 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.42341 -36.89373 -33.95629 -32.38989 -30.43619 -30.25930 -27.16658 -24.41343 -23.00302 -22.14862 -21.32016 -20.63134 -19.59150 -17.16141 -16.21821 -15.45147 -15.17911 -14.53799 -14.07671 -13.95700 -13.52094 -13.32364 -12.84129 -12.43527 -12.18960 -11.86723 -11.80833 -11.71714 -11.16292 -10.95877 -10.74254 -10.68041 -10.56266 -10.24323 -10.14705 -10.12339 -9.69495 -9.57507 -9.44895 -9.19627 -8.44046 -8.22467 -6.47415 -5.74153 -3.41368 2.77449 3.34246 3.42201 3.45429 4.46151 4.98160 5.01277 5.03794 5.12453 5.32937 5.37489 5.57357 5.71337 5.78290 5.82995 5.85615 5.96925 6.03492 6.10469 6.16930 6.22292 6.29671 6.32714 6.43625 6.50272 6.54195 6.59112 6.65837 6.75314 6.79587 7.06473 7.12670 7.22181 7.28666 7.62812 7.73830 7.82724 8.53446 9.19481 9.80637 10.39964 11.19329 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.020984 B = 0.008097 C = 0.006293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.049103 B = 3457.217926 C = 4448.194471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.015 3.985 3 Si 0.893 3.107 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.258 4.258 8 H 0.062 0.938 9 N -0.553 5.553 10 C 0.160 3.840 11 C -0.108 4.108 12 C -0.090 4.090 13 C -0.189 4.189 14 C -0.082 4.082 15 C -0.118 4.118 16 C -0.119 4.119 17 C -0.086 4.086 18 C 0.121 3.879 19 C -0.196 4.196 20 C -0.222 4.222 21 H 0.254 0.746 22 H 0.094 0.906 23 H 0.024 0.976 24 H 0.048 0.952 25 H 0.064 0.936 26 H 0.097 0.903 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.325 -5.118 9.056 10.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.186 4.186 3 Si 0.722 3.278 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.388 4.388 8 H 0.079 0.921 9 N -0.269 5.269 10 C 0.034 3.966 11 C -0.148 4.148 12 C -0.091 4.091 13 C -0.208 4.208 14 C -0.119 4.119 15 C -0.156 4.156 16 C -0.156 4.156 17 C -0.123 4.123 18 C 0.012 3.988 19 C -0.234 4.234 20 C -0.263 4.263 21 H 0.064 0.936 22 H 0.112 0.888 23 H 0.043 0.957 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.115 0.885 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.456 -4.949 9.000 10.374 hybrid contribution 0.458 0.815 -0.194 0.954 sum -0.999 -4.135 8.806 9.780 Atomic orbital electron populations 1.70074 1.05483 1.26049 1.50771 1.25230 0.94985 0.98712 0.99675 0.86478 0.79637 0.83844 0.77884 1.21214 1.21420 1.20247 1.19003 0.93222 0.85151 1.41414 0.92052 1.43414 1.50964 1.03000 1.29525 1.20825 0.90302 1.02427 0.83050 1.21451 0.97751 1.00936 0.94619 1.21018 0.97627 0.94246 0.96225 1.21706 1.01676 0.97562 0.99816 1.20327 0.98678 0.97401 0.95454 1.21584 1.01265 0.95237 0.97516 1.21601 0.98562 0.97537 0.97946 1.20422 0.97090 0.95890 0.98884 1.21230 1.00499 0.90733 0.86368 1.23006 0.92162 1.01708 1.06566 1.23341 0.96801 1.00848 1.05298 0.93617 0.88806 0.95735 0.93332 0.91729 0.88479 0.92027 0.91723 0.92145 0.92411 0.92228 0.91751 0.91446 0.90276 0.89785 0.88538 0.90904 0.91379 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.05 11.50 55.49 0.64 -24.41 16 2 C 0.01 0.40 4.98 -17.43 -0.09 0.31 16 3 Si 0.89 21.33 29.60 -169.99 -5.03 16.30 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.26 -6.96 8.47 -15.06 -0.13 -7.09 16 8 H 0.06 1.67 6.75 -52.49 -0.35 1.31 16 9 N -0.55 -13.80 2.75 -165.66 -0.46 -14.25 16 10 C 0.16 3.74 5.31 -4.04 -0.02 3.72 16 11 C -0.11 -2.16 5.54 -27.88 -0.15 -2.32 16 12 C -0.09 -1.57 5.09 -100.94 -0.51 -2.08 16 13 C -0.19 -2.97 9.37 -35.90 -0.34 -3.31 16 14 C -0.08 -1.05 6.11 -28.18 -0.17 -1.23 16 15 C -0.12 -1.44 6.01 -26.51 -0.16 -1.60 16 16 C -0.12 -1.61 6.01 -26.51 -0.16 -1.77 16 17 C -0.09 -1.38 5.80 -28.18 -0.16 -1.54 16 18 C 0.12 2.67 6.56 -67.93 -0.45 2.22 16 19 C -0.20 -4.00 9.80 -26.73 -0.26 -4.26 16 20 C -0.22 -4.71 10.36 -26.73 -0.28 -4.98 16 21 H 0.25 6.96 8.32 -40.82 -0.34 6.62 16 22 H 0.09 2.46 5.56 -51.93 -0.29 2.17 16 23 H 0.02 0.57 8.07 -51.93 -0.42 0.15 16 24 H 0.05 0.94 7.80 -51.93 -0.41 0.54 16 25 H 0.06 1.38 8.11 -51.93 -0.42 0.96 16 26 H 0.10 1.52 7.74 -52.48 -0.41 1.11 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 35 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 36 H 0.10 2.13 6.46 -51.93 -0.34 1.80 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.09 2.21 8.14 -51.93 -0.42 1.79 16 LS Contribution 311.05 15.07 4.69 4.69 Total: -1.00 -27.86 311.05 -9.88 -37.74 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -6.84 Total: 3.86 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -2.88 Total: -23.92 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.18 Total: -38.66 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.86 -9.88 -37.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450341106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.859 kcal (2) G-P(sol) polarization free energy of solvation -27.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds