Wall clock time and date at job start Sun Mar 29 2020 22:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47300 * 2 1 4 4 H 1.08994 * 109.47045 * 304.73431 * 3 2 1 5 5 C 1.50703 * 109.47114 * 184.73292 * 3 2 1 6 6 H 1.08001 * 120.00047 * 245.45236 * 5 3 2 7 7 C 1.37879 * 119.99687 * 65.45321 * 5 3 2 8 8 N 1.31510 * 119.99876 * 9.46756 * 7 5 3 9 9 Si 1.86798 * 119.99786 * 189.46225 * 7 5 3 10 10 H 1.48488 * 109.47184 * 84.99687 * 9 7 5 11 11 H 1.48502 * 109.47004 * 204.99866 * 9 7 5 12 12 H 1.48498 * 109.47066 * 324.99464 * 9 7 5 13 13 N 1.46507 * 109.46646 * 64.73565 * 3 2 1 14 14 C 1.38537 * 119.99939 * 274.99622 * 13 3 2 15 15 N 1.32996 * 120.53202 * 0.02688 * 14 13 3 16 16 C 1.31749 * 120.68402 * 179.97438 * 15 14 13 17 17 C 1.50700 * 119.07780 * 180.02562 * 16 15 14 18 18 N 1.31791 * 121.83608 * 359.74522 * 16 15 14 19 19 C 1.32547 * 121.00592 * 0.52061 * 18 16 15 20 20 C 1.38122 * 119.20275 * 359.49118 * 19 18 16 21 21 C 1.50701 * 120.83462 * 180.27171 * 20 19 18 22 22 H 1.09004 * 109.46834 * 60.00356 * 1 2 3 23 23 H 1.08999 * 109.47168 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47546 * 300.00215 * 1 2 3 25 25 H 1.09005 * 109.47504 * 239.99922 * 2 1 3 26 26 H 1.08999 * 109.47076 * 120.00028 * 2 1 3 27 27 H 0.97006 * 120.00078 * 179.97438 * 8 7 5 28 28 H 0.97003 * 119.99642 * 95.00111 * 13 3 2 29 29 H 1.08992 * 109.47523 * 90.00645 * 17 16 15 30 30 H 1.09007 * 109.46867 * 210.00368 * 17 16 15 31 31 H 1.08999 * 109.47582 * 329.99683 * 17 16 15 32 32 H 1.08000 * 120.39920 * 179.76402 * 19 18 16 33 33 H 1.08999 * 109.46820 * 89.99674 * 21 20 19 34 34 H 1.08995 * 109.47055 * 210.00069 * 21 20 19 35 35 H 1.09002 * 109.47072 * 329.99720 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6091 1.9802 -0.8445 5 6 3.5425 1.4441 -0.1172 6 1 4.1475 1.8097 0.6993 7 6 4.1447 0.9788 -1.2670 8 7 3.4160 0.7092 -2.3280 9 14 5.9955 0.7315 -1.3175 10 1 6.3312 -0.6072 -0.7699 11 1 6.4692 0.8249 -2.7218 12 1 6.6575 1.7805 -0.5011 13 7 1.6470 2.0994 1.2492 14 6 0.3952 2.6823 1.3612 15 7 -0.4582 2.6514 0.3416 16 6 -1.6495 3.2044 0.4450 17 6 -2.5880 3.1477 -0.7328 18 7 -2.0454 3.8010 1.5515 19 6 -1.2493 3.8771 2.6085 20 6 0.0092 3.3113 2.5465 21 6 0.9420 3.3709 3.7286 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8397 0.3822 -3.1371 28 1 2.2632 2.1261 1.9978 29 1 -3.1966 2.2457 -0.6694 30 1 -3.2358 4.0244 -0.7237 31 1 -2.0106 3.1322 -1.6571 32 1 -1.5823 4.3716 3.5090 33 1 0.7844 2.4966 4.3601 34 1 1.9736 3.3840 3.3770 35 1 0.7426 4.2752 4.3035 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517247931.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:57 Heat of formation + Delta-G solvation = 37.203394 kcal Electronic energy + Delta-G solvation = -16915.558088 eV Core-core repulsion = 14334.291710 eV Total energy + Delta-G solvation = -2581.266379 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.45823 -36.59318 -34.01533 -33.12708 -31.60159 -30.31130 -29.73175 -26.89873 -25.32987 -23.50789 -22.47902 -21.28161 -19.85135 -17.62328 -16.70363 -16.02220 -15.03292 -14.81716 -14.24734 -13.85127 -13.70712 -13.15002 -13.02230 -12.73309 -12.61554 -12.15605 -11.96795 -11.84974 -11.57790 -11.40369 -11.01013 -10.93148 -10.55261 -10.24219 -10.18540 -10.13103 -9.64357 -9.14099 -8.85508 -8.52408 -8.36773 -7.13395 -6.18509 -4.23814 1.58303 2.06037 3.22284 3.29310 3.30436 3.97195 4.32706 4.43128 4.63401 4.90064 5.14715 5.25714 5.40217 5.56595 5.78357 5.80960 5.91410 6.03435 6.09628 6.29412 6.32103 6.35404 6.38684 6.55261 6.91554 6.97499 7.13609 7.29467 7.45292 7.51319 7.64503 7.77812 8.01365 8.19359 8.52242 8.78334 9.04727 9.41250 10.89391 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.030176 B = 0.007547 C = 0.006647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.664309 B = 3709.182108 C = 4211.627180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.118 4.118 3 C 0.272 3.728 4 H 0.062 0.938 5 C -0.540 4.540 6 H 0.059 0.941 7 C 0.071 3.929 8 N -0.878 5.878 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.681 5.681 14 C 0.449 3.551 15 N -0.556 5.556 16 C 0.344 3.656 17 C -0.080 4.080 18 N -0.582 5.582 19 C 0.168 3.832 20 C -0.288 4.288 21 C -0.089 4.089 22 H 0.057 0.943 23 H 0.021 0.979 24 H 0.034 0.966 25 H 0.080 0.920 26 H 0.031 0.969 27 H 0.265 0.735 28 H 0.399 0.601 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.152 0.848 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.572 3.129 7.209 10.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.158 4.158 3 C 0.170 3.830 4 H 0.080 0.920 5 C -0.579 4.579 6 H 0.077 0.923 7 C -0.133 4.133 8 N -0.514 5.514 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.308 5.308 14 C 0.202 3.798 15 N -0.281 5.281 16 C 0.075 3.925 17 C -0.139 4.139 18 N -0.303 5.303 19 C 0.007 3.993 20 C -0.299 4.299 21 C -0.147 4.147 22 H 0.076 0.924 23 H 0.040 0.960 24 H 0.053 0.947 25 H 0.098 0.902 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.235 0.765 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.169 0.831 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.037 2.893 6.039 9.714 hybrid contribution 1.908 -0.209 0.997 2.163 sum -5.129 2.685 7.036 9.111 Atomic orbital electron populations 1.21818 0.98095 0.97863 1.01270 1.21846 0.92993 0.99908 1.01022 1.18876 0.94136 0.88862 0.81098 0.92008 1.21171 0.90639 1.44168 1.01894 0.92269 1.24853 0.98440 0.95077 0.94932 1.69975 1.35744 1.43607 1.02103 0.86542 0.85028 0.78729 0.77302 1.20407 1.21107 1.19954 1.45544 1.10709 1.55756 1.18767 1.18538 0.87042 0.86319 0.87910 1.68097 1.04481 1.24762 1.30767 1.22817 0.89370 0.87527 0.92797 1.20462 0.96826 1.02888 0.93699 1.68155 1.37228 1.23728 1.01227 1.22505 0.88557 0.92325 0.95946 1.20830 0.99859 1.11310 0.97938 1.20372 0.97783 1.01693 0.94870 0.92371 0.96009 0.94718 0.90188 0.95011 0.92532 0.76470 0.90335 0.90377 0.89911 0.83091 0.91989 0.92034 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 8.44 37.16 0.31 -2.51 16 2 C -0.12 -2.78 5.50 -26.73 -0.15 -2.93 16 3 C 0.27 6.65 2.12 -69.07 -0.15 6.51 16 4 H 0.06 1.73 7.51 -51.93 -0.39 1.34 16 5 C -0.54 -14.13 8.66 -34.44 -0.30 -14.43 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.89 5.16 -17.82 -0.09 1.80 16 8 N -0.88 -24.33 12.16 55.43 0.67 -23.66 16 9 Si 0.90 20.46 29.55 -169.99 -5.02 15.44 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.68 -14.17 5.06 -54.90 -0.28 -14.45 16 14 C 0.45 8.93 6.02 -154.78 -0.93 8.00 16 15 N -0.56 -11.41 6.50 -9.96 -0.06 -11.48 16 16 C 0.34 6.29 7.64 -157.24 -1.20 5.09 16 17 C -0.08 -1.15 10.32 36.01 0.37 -0.78 16 18 N -0.58 -10.21 10.33 -10.81 -0.11 -10.32 16 19 C 0.17 2.65 10.99 -17.29 -0.19 2.46 16 20 C -0.29 -4.78 5.93 -104.15 -0.62 -5.40 16 21 C -0.09 -1.15 9.64 36.01 0.35 -0.80 16 22 H 0.06 1.28 7.67 -51.93 -0.40 0.88 16 23 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.03 0.73 5.60 -51.93 -0.29 0.44 16 25 H 0.08 2.06 6.81 -51.93 -0.35 1.71 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.40 7.51 6.66 -40.82 -0.27 7.24 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.15 1.83 8.06 -52.49 -0.42 1.40 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.81 6.68 -51.93 -0.35 0.46 16 35 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 287.32 15.07 4.33 4.33 Total: -1.00 -28.87 287.32 -8.04 -36.90 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.97 Total: 6.22 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -2.59 Total: -2.99 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: 0.22 Total: -59.91 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.87 -8.04 -36.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517247931.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.107 kcal (2) G-P(sol) polarization free energy of solvation -28.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds