Wall clock time and date at job start Sun Mar 29 2020 22:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47300 * 2 1 4 4 H 1.08994 * 109.47045 * 304.73431 * 3 2 1 5 5 C 1.50703 * 109.47114 * 184.73292 * 3 2 1 6 6 H 1.08001 * 120.00047 * 245.45236 * 5 3 2 7 7 C 1.37879 * 119.99687 * 65.45321 * 5 3 2 8 8 N 1.31510 * 119.99876 * 9.46756 * 7 5 3 9 9 Si 1.86798 * 119.99786 * 189.46225 * 7 5 3 10 10 H 1.48488 * 109.47184 * 84.99687 * 9 7 5 11 11 H 1.48502 * 109.47004 * 204.99866 * 9 7 5 12 12 H 1.48498 * 109.47066 * 324.99464 * 9 7 5 13 13 N 1.46507 * 109.46646 * 64.73565 * 3 2 1 14 14 C 1.38537 * 119.99939 * 274.99622 * 13 3 2 15 15 N 1.32996 * 120.53202 * 0.02688 * 14 13 3 16 16 C 1.31749 * 120.68402 * 179.97438 * 15 14 13 17 17 C 1.50700 * 119.07780 * 180.02562 * 16 15 14 18 18 N 1.31791 * 121.83608 * 359.74522 * 16 15 14 19 19 C 1.32547 * 121.00592 * 0.52061 * 18 16 15 20 20 C 1.38122 * 119.20275 * 359.49118 * 19 18 16 21 21 C 1.50701 * 120.83462 * 180.27171 * 20 19 18 22 22 H 1.09004 * 109.46834 * 60.00356 * 1 2 3 23 23 H 1.08999 * 109.47168 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47546 * 300.00215 * 1 2 3 25 25 H 1.09005 * 109.47504 * 239.99922 * 2 1 3 26 26 H 1.08999 * 109.47076 * 120.00028 * 2 1 3 27 27 H 0.97006 * 120.00078 * 179.97438 * 8 7 5 28 28 H 0.97003 * 119.99642 * 95.00111 * 13 3 2 29 29 H 1.08992 * 109.47523 * 90.00645 * 17 16 15 30 30 H 1.09007 * 109.46867 * 210.00368 * 17 16 15 31 31 H 1.08999 * 109.47582 * 329.99683 * 17 16 15 32 32 H 1.08000 * 120.39920 * 179.76402 * 19 18 16 33 33 H 1.08999 * 109.46820 * 89.99674 * 21 20 19 34 34 H 1.08995 * 109.47055 * 210.00069 * 21 20 19 35 35 H 1.09002 * 109.47072 * 329.99720 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6091 1.9802 -0.8445 5 6 3.5425 1.4441 -0.1172 6 1 4.1475 1.8097 0.6993 7 6 4.1447 0.9788 -1.2670 8 7 3.4160 0.7092 -2.3280 9 14 5.9955 0.7315 -1.3175 10 1 6.3312 -0.6072 -0.7699 11 1 6.4692 0.8249 -2.7218 12 1 6.6575 1.7805 -0.5011 13 7 1.6470 2.0994 1.2492 14 6 0.3952 2.6823 1.3612 15 7 -0.4582 2.6514 0.3416 16 6 -1.6495 3.2044 0.4450 17 6 -2.5880 3.1477 -0.7328 18 7 -2.0454 3.8010 1.5515 19 6 -1.2493 3.8771 2.6085 20 6 0.0092 3.3113 2.5465 21 6 0.9420 3.3709 3.7286 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8397 0.3822 -3.1371 28 1 2.2632 2.1261 1.9978 29 1 -3.1966 2.2457 -0.6694 30 1 -3.2358 4.0244 -0.7237 31 1 -2.0106 3.1322 -1.6571 32 1 -1.5823 4.3716 3.5090 33 1 0.7844 2.4966 4.3601 34 1 1.9736 3.3840 3.3770 35 1 0.7426 4.2752 4.3035 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517247931.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:57 Heat of formation + Delta-G solvation = 20.669754 kcal Electronic energy + Delta-G solvation = -16916.275041 eV Core-core repulsion = 14334.291710 eV Total energy + Delta-G solvation = -2581.983331 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.84628 -38.25570 -35.49584 -34.70352 -33.40627 -31.92381 -30.90259 -28.76578 -26.51216 -25.25975 -24.08370 -22.65330 -21.64915 -19.25157 -18.26585 -17.72039 -16.75996 -16.39804 -15.72372 -15.38932 -15.08538 -14.72862 -14.41969 -14.17462 -13.95191 -13.55190 -13.29307 -13.14306 -13.04214 -13.02101 -12.86695 -12.67162 -12.24137 -12.08603 -11.92271 -11.60065 -11.37379 -11.03177 -10.52266 -10.26716 -9.82042 -8.66088 -8.19960 -6.32456 0.26252 0.65028 1.41982 1.43096 1.52002 2.33351 2.56983 3.06180 3.11689 3.37755 3.60130 3.98647 4.23503 4.37185 4.49944 4.54079 4.60688 4.73208 4.79146 4.84741 4.88159 5.04462 5.07834 5.14475 5.25943 5.27202 5.44660 5.51847 5.61257 5.75687 5.83360 6.01875 6.16196 6.50492 6.76501 7.01892 7.36131 7.62152 8.87661 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.030176 B = 0.007547 C = 0.006647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.664309 B = 3709.182108 C = 4211.627180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.110 4.110 3 C 0.286 3.714 4 H 0.017 0.983 5 C -0.555 4.555 6 H 0.064 0.936 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.962 3.038 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.268 1.268 13 N -0.688 5.688 14 C 0.422 3.578 15 N -0.588 5.588 16 C 0.326 3.674 17 C -0.077 4.077 18 N -0.584 5.584 19 C 0.167 3.833 20 C -0.283 4.283 21 C -0.086 4.086 22 H 0.043 0.957 23 H 0.039 0.961 24 H 0.035 0.965 25 H 0.051 0.949 26 H 0.035 0.965 27 H 0.265 0.735 28 H 0.407 0.593 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.195 0.805 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.780 3.669 9.133 11.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.150 4.150 3 C 0.183 3.817 4 H 0.035 0.965 5 C -0.593 4.593 6 H 0.082 0.918 7 C -0.179 4.179 8 N -0.548 5.548 9 Si 0.787 3.213 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.192 1.192 13 N -0.318 5.318 14 C 0.177 3.823 15 N -0.314 5.314 16 C 0.057 3.943 17 C -0.135 4.135 18 N -0.305 5.305 19 C 0.005 3.995 20 C -0.294 4.294 21 C -0.144 4.144 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.245 0.755 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.093 0.907 32 H 0.211 0.789 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.276 3.456 7.993 11.348 hybrid contribution 1.869 -0.295 0.446 1.944 sum -5.406 3.161 8.439 10.509 Atomic orbital electron populations 1.21615 0.96347 0.98716 1.00582 1.21686 0.94444 0.99174 0.99673 1.18376 0.93074 0.88880 0.81417 0.96500 1.21538 0.91806 1.43904 1.02056 0.91812 1.25671 1.02819 0.94807 0.94583 1.70107 1.37550 1.44517 1.02627 0.85514 0.79705 0.78891 0.77181 1.19694 1.21136 1.19202 1.45170 1.11748 1.57047 1.17789 1.18898 0.86707 0.87377 0.89335 1.68075 1.05559 1.25852 1.31878 1.23437 0.89237 0.87506 0.94140 1.20538 0.96452 1.04460 0.92046 1.68249 1.37554 1.23209 1.01467 1.23227 0.87953 0.91584 0.96722 1.21215 1.00770 1.09625 0.97744 1.20453 0.96465 1.03781 0.93737 0.93771 0.94208 0.94610 0.93031 0.94576 0.92599 0.75532 0.88988 0.88391 0.90712 0.78856 0.90611 0.92613 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.94 8.44 71.98 0.61 -4.33 16 2 C -0.11 -5.30 5.50 30.59 0.17 -5.13 16 3 C 0.29 14.39 2.12 44.25 0.09 14.48 16 4 H 0.02 1.01 7.51 -2.39 -0.02 0.99 16 5 C -0.55 -29.46 8.66 25.60 0.22 -29.24 16 6 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 7 C 0.02 1.19 5.16 84.66 0.44 1.63 16 8 N -0.91 -51.91 12.16 21.45 0.26 -51.65 16 9 Si 0.96 42.17 29.55 68.60 2.03 44.19 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 13 N -0.69 -28.85 5.06 -327.61 -1.66 -30.51 16 14 C 0.42 16.68 6.02 133.16 0.80 17.48 16 15 N -0.59 -24.38 6.50 -185.44 -1.21 -25.58 16 16 C 0.33 11.70 7.64 138.76 1.06 12.76 16 17 C -0.08 -2.16 10.32 71.24 0.73 -1.42 16 18 N -0.58 -19.33 10.33 -188.10 -1.94 -21.27 16 19 C 0.17 4.77 10.99 84.56 0.93 5.69 16 20 C -0.28 -8.80 5.93 -19.56 -0.12 -8.92 16 21 C -0.09 -1.97 9.64 71.24 0.69 -1.28 16 22 H 0.04 1.99 7.67 -2.38 -0.02 1.97 16 23 H 0.04 1.51 8.14 -2.39 -0.02 1.50 16 24 H 0.03 1.51 5.60 -2.39 -0.01 1.49 16 25 H 0.05 2.75 6.81 -2.38 -0.02 2.73 16 26 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.26 14.34 8.31 -92.70 -0.77 13.57 16 28 H 0.41 15.24 6.66 -92.71 -0.62 14.63 16 29 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 31 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.19 3.77 8.06 -2.91 -0.02 3.75 16 33 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.05 1.35 6.68 -2.39 -0.02 1.33 16 35 H 0.09 1.58 8.10 -2.39 -0.02 1.56 16 Total: -1.00 -63.20 287.32 3.58 -59.62 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.47 Total: 23.46 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 5.63 Total: 1.73 kcal Atomic # 7 Polarization: -124.47 SS G_CDS: -4.55 Total: -129.01 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -63.20 3.58 -59.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517247931.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.292 kcal (2) G-P(sol) polarization free energy of solvation -63.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds