Wall clock time and date at job start Sun Mar 29 2020 22:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36879 * 126.39581 * 2 1 4 4 C 1.34668 * 106.81802 * 180.11895 * 3 2 1 5 5 N 1.34127 * 108.01794 * 359.59069 * 4 3 2 6 6 C 1.30502 * 109.25776 * 0.25672 * 5 4 3 7 7 C 1.50704 * 125.65028 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.46904 * 195.02535 * 7 6 5 9 9 N 1.46893 * 109.47214 * 315.03380 * 7 6 5 10 10 C 1.46903 * 110.99809 * 207.09398 * 9 7 6 11 11 C 1.50697 * 109.46988 * 182.64420 * 10 9 7 12 12 H 1.07993 * 120.00244 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99740 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00073 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00174 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.46851 * 90.00080 * 15 13 11 17 17 H 1.48495 * 109.47339 * 210.00365 * 15 13 11 18 18 H 1.48500 * 109.46715 * 330.00529 * 15 13 11 19 19 C 1.53002 * 109.46514 * 75.03206 * 7 6 5 20 20 C 1.53001 * 117.49867 * 132.00607 * 19 7 6 21 21 C 1.52995 * 117.50303 * 63.34524 * 19 7 6 22 22 H 1.08994 * 109.47442 * 270.34249 * 1 2 3 23 23 H 1.09002 * 109.47239 * 30.34766 * 1 2 3 24 24 H 1.09006 * 109.46991 * 150.34260 * 1 2 3 25 25 H 1.08003 * 126.59153 * 0.02562 * 3 2 1 26 26 H 1.07996 * 125.99125 * 179.84865 * 4 3 2 27 27 H 1.00899 * 111.00475 * 83.13854 * 9 7 6 28 28 H 1.08990 * 109.46991 * 302.64787 * 10 9 7 29 29 H 1.09004 * 109.46620 * 62.64519 * 10 9 7 30 30 H 0.96998 * 120.00193 * 179.97438 * 14 13 11 31 31 H 1.09010 * 115.54863 * 277.67051 * 19 7 6 32 32 H 1.09004 * 117.49523 * 359.97438 * 20 19 7 33 33 H 1.09000 * 117.50026 * 145.01015 * 20 19 7 34 34 H 1.09000 * 117.50289 * 214.97909 * 21 19 7 35 35 H 1.09005 * 117.49867 * 359.97438 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5461 0.6505 -0.0027 5 7 3.5096 -0.6902 0.0048 6 6 2.2663 -1.0870 0.0066 7 6 1.8018 -2.5206 0.0139 8 1 0.7458 -2.5617 -0.2526 9 7 2.5834 -3.2935 -0.9606 10 6 1.8148 -4.4416 -1.4599 11 6 2.6697 -5.2454 -2.4055 12 1 3.6824 -4.9343 -2.6149 13 6 2.1584 -6.3774 -3.0040 14 7 2.9046 -7.0792 -3.8289 15 14 0.4064 -6.9151 -2.6423 16 1 -0.5168 -6.2833 -3.6188 17 1 0.3091 -8.3927 -2.7535 18 1 0.0343 -6.4966 -1.2670 19 6 1.9988 -3.1132 1.4107 20 6 0.8246 -3.8773 2.0259 21 6 1.2017 -2.4932 2.5600 22 1 -0.3634 0.0061 1.0276 23 1 -0.3634 0.8869 -0.5192 24 1 -0.3633 -0.8931 -0.5085 25 1 1.9612 2.1346 0.0004 26 1 4.4368 1.2612 -0.0057 27 1 3.4623 -3.5915 -0.5646 28 1 1.5122 -5.0686 -0.6213 29 1 0.9287 -4.0848 -1.9851 30 1 2.5451 -7.8758 -4.2497 31 1 3.0040 -3.4724 1.6315 32 1 -0.0883 -3.9573 1.4356 33 1 1.0573 -4.7388 2.6517 34 1 1.6822 -2.4447 3.5371 35 1 0.5372 -1.6628 2.3212 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519143162.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:48 Heat of formation + Delta-G solvation = 93.396599 kcal Electronic energy + Delta-G solvation = -16656.195701 eV Core-core repulsion = 14077.366043 eV Total energy + Delta-G solvation = -2578.829659 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.82426 -37.89582 -34.59038 -33.79951 -32.35769 -30.00291 -27.55856 -26.81258 -24.60656 -22.31251 -21.60905 -21.16326 -20.69635 -19.12932 -17.13696 -16.68811 -15.90022 -15.29100 -14.93982 -14.24869 -14.18753 -13.72377 -13.24170 -13.12710 -12.84738 -12.72954 -12.67028 -12.31421 -11.58445 -11.49982 -11.24746 -10.74892 -10.70339 -10.29480 -10.00608 -9.82162 -9.56327 -9.33980 -9.28959 -8.58678 -8.09741 -7.47280 -6.04108 -4.02019 2.28083 2.92933 3.27719 3.34938 3.36143 3.49620 3.89757 4.41926 4.62010 4.73771 4.81973 4.93832 4.99335 5.03295 5.13394 5.28092 5.28963 5.36208 5.58365 5.62853 5.67399 5.75553 5.96003 6.00666 6.15996 6.30757 6.54274 6.73157 7.02865 7.03997 7.37480 7.59359 7.88135 8.34877 8.49168 8.66220 9.05707 9.57037 11.09279 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.027161 B = 0.007083 C = 0.006480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.630820 B = 3951.997678 C = 4320.105318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.462 5.462 3 C -0.075 4.075 4 C -0.029 4.029 5 N -0.474 5.474 6 C 0.244 3.756 7 C 0.200 3.800 8 H 0.080 0.920 9 N -0.659 5.659 10 C 0.166 3.834 11 C -0.515 4.515 12 H 0.081 0.919 13 C 0.069 3.931 14 N -0.899 5.899 15 Si 0.876 3.124 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.266 1.266 19 C -0.165 4.165 20 C -0.172 4.172 21 C -0.178 4.178 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.168 0.832 26 H 0.164 0.836 27 H 0.349 0.651 28 H -0.009 1.009 29 H 0.018 0.982 30 H 0.264 0.736 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.506 13.659 11.859 19.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.146 5.146 3 C -0.207 4.207 4 C -0.178 4.178 5 N -0.191 5.191 6 C -0.020 4.020 7 C 0.086 3.914 8 H 0.098 0.902 9 N -0.289 5.289 10 C 0.039 3.961 11 C -0.553 4.553 12 H 0.099 0.901 13 C -0.133 4.133 14 N -0.538 5.538 15 Si 0.703 3.297 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.191 1.191 19 C -0.186 4.186 20 C -0.209 4.209 21 C -0.216 4.216 22 H 0.091 0.909 23 H 0.102 0.898 24 H 0.105 0.895 25 H 0.185 0.815 26 H 0.182 0.818 27 H 0.169 0.831 28 H 0.009 0.991 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.130 0.870 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.133 13.383 11.169 18.835 hybrid contribution -1.653 -0.229 0.774 1.839 sum -8.786 13.154 11.943 19.821 Atomic orbital electron populations 1.22016 0.77504 1.04650 1.03085 1.45257 1.07138 1.06708 1.55454 1.22523 0.91596 0.92122 1.14482 1.22281 0.96077 0.91664 1.07755 1.70239 1.18569 1.11122 1.19209 1.23234 0.85547 0.90302 1.02914 1.19305 0.97412 0.85301 0.89340 0.90163 1.60356 1.06602 1.26437 1.35546 1.20048 0.94329 0.87286 0.94486 1.21054 1.01345 1.07887 1.25051 0.90131 1.24894 0.97412 0.96173 0.94780 1.69901 1.36583 1.17346 1.30005 0.86851 0.85697 0.77926 0.79230 1.20276 1.21198 1.19103 1.23139 0.97526 1.03842 0.94096 1.23010 0.99187 0.95058 1.03687 1.22839 1.04026 0.96330 0.98404 0.90878 0.89775 0.89507 0.81472 0.81824 0.83087 0.99135 0.96403 0.92659 0.87005 0.88891 0.88615 0.89043 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 10.93 59.85 0.65 1.32 16 2 N -0.46 -6.39 3.15 -121.27 -0.38 -6.77 16 3 C -0.08 -0.97 11.58 -16.56 -0.19 -1.16 16 4 C -0.03 -0.44 11.87 -17.81 -0.21 -0.66 16 5 N -0.47 -8.82 11.23 -10.82 -0.12 -8.95 16 6 C 0.24 4.18 6.48 -155.42 -1.01 3.17 16 7 C 0.20 3.49 2.56 -68.87 -0.18 3.31 16 8 H 0.08 1.33 6.18 -51.93 -0.32 1.01 16 9 N -0.66 -14.27 6.23 -109.22 -0.68 -14.95 16 10 C 0.17 4.01 4.30 -4.98 -0.02 3.99 16 11 C -0.52 -14.89 9.84 -34.44 -0.34 -15.23 16 12 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 13 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 14 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 15 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 19 C -0.17 -2.55 5.07 -90.62 -0.46 -3.01 16 20 C -0.17 -2.33 10.18 -26.69 -0.27 -2.60 16 21 C -0.18 -2.23 9.96 -26.70 -0.27 -2.50 16 22 H 0.07 0.56 7.75 -51.93 -0.40 0.16 16 23 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.09 0.85 6.92 -51.93 -0.36 0.49 16 25 H 0.17 1.51 8.06 -52.48 -0.42 1.09 16 26 H 0.16 2.03 8.06 -52.49 -0.42 1.61 16 27 H 0.35 7.68 8.28 -39.29 -0.33 7.36 16 28 H -0.01 -0.21 7.11 -51.93 -0.37 -0.58 16 29 H 0.02 0.44 7.54 -51.93 -0.39 0.04 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.11 1.82 7.95 -51.92 -0.41 1.41 16 32 H 0.09 1.24 8.07 -51.93 -0.42 0.82 16 33 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 0.99 7.75 -51.93 -0.40 0.59 16 LS Contribution 295.49 15.07 4.45 4.45 Total: -1.00 -33.46 295.49 -8.12 -41.58 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -5.11 Total: 6.44 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -2.39 Total: -11.44 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.41 Total: -57.75 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.46 -8.12 -41.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519143162.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.976 kcal (2) G-P(sol) polarization free energy of solvation -33.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds