Wall clock time and date at job start Sun Mar 29 2020 22:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36879 * 126.39581 * 2 1 4 4 C 1.34668 * 106.81802 * 180.11895 * 3 2 1 5 5 N 1.34127 * 108.01794 * 359.59069 * 4 3 2 6 6 C 1.30502 * 109.25776 * 0.25672 * 5 4 3 7 7 C 1.50704 * 125.65028 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.46904 * 195.02535 * 7 6 5 9 9 N 1.46893 * 109.47214 * 315.03380 * 7 6 5 10 10 C 1.46903 * 110.99809 * 207.09398 * 9 7 6 11 11 C 1.50697 * 109.46988 * 182.64420 * 10 9 7 12 12 H 1.07993 * 120.00244 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99740 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00073 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00174 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.46851 * 90.00080 * 15 13 11 17 17 H 1.48495 * 109.47339 * 210.00365 * 15 13 11 18 18 H 1.48500 * 109.46715 * 330.00529 * 15 13 11 19 19 C 1.53002 * 109.46514 * 75.03206 * 7 6 5 20 20 C 1.53001 * 117.49867 * 132.00607 * 19 7 6 21 21 C 1.52995 * 117.50303 * 63.34524 * 19 7 6 22 22 H 1.08994 * 109.47442 * 270.34249 * 1 2 3 23 23 H 1.09002 * 109.47239 * 30.34766 * 1 2 3 24 24 H 1.09006 * 109.46991 * 150.34260 * 1 2 3 25 25 H 1.08003 * 126.59153 * 0.02562 * 3 2 1 26 26 H 1.07996 * 125.99125 * 179.84865 * 4 3 2 27 27 H 1.00899 * 111.00475 * 83.13854 * 9 7 6 28 28 H 1.08990 * 109.46991 * 302.64787 * 10 9 7 29 29 H 1.09004 * 109.46620 * 62.64519 * 10 9 7 30 30 H 0.96998 * 120.00193 * 179.97438 * 14 13 11 31 31 H 1.09010 * 115.54863 * 277.67051 * 19 7 6 32 32 H 1.09004 * 117.49523 * 359.97438 * 20 19 7 33 33 H 1.09000 * 117.50026 * 145.01015 * 20 19 7 34 34 H 1.09000 * 117.50289 * 214.97909 * 21 19 7 35 35 H 1.09005 * 117.49867 * 359.97438 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5461 0.6505 -0.0027 5 7 3.5096 -0.6902 0.0048 6 6 2.2663 -1.0870 0.0066 7 6 1.8018 -2.5206 0.0139 8 1 0.7458 -2.5617 -0.2526 9 7 2.5834 -3.2935 -0.9606 10 6 1.8148 -4.4416 -1.4599 11 6 2.6697 -5.2454 -2.4055 12 1 3.6824 -4.9343 -2.6149 13 6 2.1584 -6.3774 -3.0040 14 7 2.9046 -7.0792 -3.8289 15 14 0.4064 -6.9151 -2.6423 16 1 -0.5168 -6.2833 -3.6188 17 1 0.3091 -8.3927 -2.7535 18 1 0.0343 -6.4966 -1.2670 19 6 1.9988 -3.1132 1.4107 20 6 0.8246 -3.8773 2.0259 21 6 1.2017 -2.4932 2.5600 22 1 -0.3634 0.0061 1.0276 23 1 -0.3634 0.8869 -0.5192 24 1 -0.3633 -0.8931 -0.5085 25 1 1.9612 2.1346 0.0004 26 1 4.4368 1.2612 -0.0057 27 1 3.4623 -3.5915 -0.5646 28 1 1.5122 -5.0686 -0.6213 29 1 0.9287 -4.0848 -1.9851 30 1 2.5451 -7.8758 -4.2497 31 1 3.0040 -3.4724 1.6315 32 1 -0.0883 -3.9573 1.4356 33 1 1.0573 -4.7388 2.6517 34 1 1.6822 -2.4447 3.5371 35 1 0.5372 -1.6628 2.3212 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519143162.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:47 Heat of formation + Delta-G solvation = 69.905673 kcal Electronic energy + Delta-G solvation = -16657.214344 eV Core-core repulsion = 14077.366043 eV Total energy + Delta-G solvation = -2579.848302 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.92724 -39.13425 -36.20707 -34.81652 -34.41106 -31.46108 -29.13002 -27.79345 -26.13926 -23.35228 -23.22356 -22.54868 -21.84798 -20.38024 -18.94394 -18.01672 -17.12351 -16.63700 -16.31109 -15.79678 -15.27971 -15.13756 -14.88472 -14.41364 -14.18826 -14.12474 -13.71238 -13.50964 -13.17953 -12.72306 -12.57914 -12.48227 -12.31665 -11.84971 -11.53443 -11.44322 -11.06734 -10.80301 -10.73056 -10.42328 -9.24848 -9.09446 -8.28798 -6.34267 1.20537 1.35422 1.38522 1.49590 1.95895 2.31562 2.35512 2.83139 3.05028 3.41348 3.65999 3.74312 3.91561 3.99577 4.04054 4.21287 4.29113 4.40257 4.56766 4.63045 4.67597 4.74188 4.77494 4.90040 4.95338 5.09858 5.14899 5.18529 5.46394 5.50863 5.92280 5.98944 6.33505 6.51730 6.63911 6.74981 7.30195 7.36571 8.88447 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.027161 B = 0.007083 C = 0.006480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.630820 B = 3951.997678 C = 4320.105318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.459 5.459 3 C -0.050 4.050 4 C -0.066 4.066 5 N -0.521 5.521 6 C 0.216 3.784 7 C 0.206 3.794 8 H 0.090 0.910 9 N -0.676 5.676 10 C 0.183 3.817 11 C -0.532 4.532 12 H 0.029 0.971 13 C 0.006 3.994 14 N -0.950 5.950 15 Si 0.954 3.046 16 H -0.265 1.265 17 H -0.282 1.282 18 H -0.240 1.240 19 C -0.191 4.191 20 C -0.169 4.169 21 C -0.152 4.152 22 H 0.097 0.903 23 H 0.111 0.889 24 H 0.082 0.918 25 H 0.213 0.787 26 H 0.179 0.821 27 H 0.340 0.660 28 H 0.000 1.000 29 H 0.024 0.976 30 H 0.268 0.732 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.831 15.221 13.492 23.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.141 5.141 3 C -0.183 4.183 4 C -0.214 4.214 5 N -0.240 5.240 6 C -0.048 4.048 7 C 0.094 3.906 8 H 0.108 0.892 9 N -0.306 5.306 10 C 0.055 3.945 11 C -0.570 4.570 12 H 0.048 0.952 13 C -0.191 4.191 14 N -0.590 5.590 15 Si 0.776 3.224 16 H -0.190 1.190 17 H -0.207 1.207 18 H -0.164 1.164 19 C -0.212 4.212 20 C -0.205 4.205 21 C -0.190 4.190 22 H 0.115 0.885 23 H 0.130 0.870 24 H 0.100 0.900 25 H 0.229 0.771 26 H 0.196 0.804 27 H 0.158 0.842 28 H 0.017 0.983 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.478 14.972 12.824 22.325 hybrid contribution -0.503 -0.598 0.244 0.819 sum -10.982 14.374 13.068 22.315 Atomic orbital electron populations 1.22382 0.74799 1.05853 1.05077 1.45492 1.08789 1.05866 1.53995 1.23174 0.90604 0.93565 1.10973 1.22732 0.98169 0.90861 1.09613 1.70126 1.20218 1.13282 1.20335 1.23004 0.85939 0.90805 1.05057 1.19249 0.96923 0.85151 0.89291 0.89208 1.60233 1.06673 1.25612 1.38059 1.19743 0.93526 0.87681 0.93580 1.21338 1.00082 1.09098 1.26463 0.95221 1.25950 1.03027 0.95946 0.94198 1.70075 1.39344 1.18135 1.31481 0.85620 0.78734 0.77511 0.80530 1.19021 1.20733 1.16352 1.22932 0.97527 1.06427 0.94349 1.23114 0.98158 0.95928 1.03348 1.22897 1.02445 0.96221 0.97409 0.88472 0.87006 0.89966 0.77077 0.80359 0.84152 0.98278 0.95786 0.92352 0.88983 0.88224 0.87965 0.87978 0.88147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.90 10.93 127.77 1.40 2.30 16 2 N -0.46 -11.44 3.15 -537.59 -1.69 -13.13 16 3 C -0.05 -1.14 11.58 83.09 0.96 -0.18 16 4 C -0.07 -1.95 11.87 83.52 0.99 -0.96 16 5 N -0.52 -19.59 11.23 -188.13 -2.11 -21.71 16 6 C 0.22 7.23 6.48 138.13 0.90 8.12 16 7 C 0.21 7.07 2.56 44.17 0.11 7.18 16 8 H 0.09 2.82 6.18 -2.39 -0.01 2.81 16 9 N -0.68 -30.02 6.23 -499.48 -3.11 -33.14 16 10 C 0.18 8.85 4.30 85.56 0.37 9.22 16 11 C -0.53 -31.87 9.84 25.60 0.25 -31.61 16 12 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 13 C 0.01 0.35 5.47 84.66 0.46 0.82 16 14 N -0.95 -60.70 13.96 21.45 0.30 -60.40 16 15 Si 0.95 43.66 27.47 68.60 1.88 45.55 16 16 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 18 H -0.24 -9.92 6.54 99.48 0.65 -9.27 16 19 C -0.19 -5.77 5.07 -10.79 -0.05 -5.82 16 20 C -0.17 -4.14 10.18 30.62 0.31 -3.82 16 21 C -0.15 -3.40 9.96 30.62 0.30 -3.09 16 22 H 0.10 1.02 7.75 -2.39 -0.02 1.00 16 23 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.08 1.34 6.92 -2.38 -0.02 1.32 16 25 H 0.21 2.77 8.06 -2.91 -0.02 2.75 16 26 H 0.18 4.34 8.06 -2.91 -0.02 4.32 16 27 H 0.34 15.89 8.28 -89.69 -0.74 15.15 16 28 H 0.00 -0.02 7.11 -2.39 -0.02 -0.04 16 29 H 0.02 1.14 7.54 -2.38 -0.02 1.12 16 30 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 31 H 0.09 3.10 7.95 -2.38 -0.02 3.08 16 32 H 0.10 2.32 8.07 -2.38 -0.02 2.30 16 33 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.10 1.94 7.75 -2.38 -0.02 1.92 16 Total: -1.00 -76.14 295.49 1.55 -74.59 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: 0.28 Total: 26.10 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: 6.00 Total: -17.86 kcal Atomic # 7 Polarization: -121.75 SS G_CDS: -6.62 Total: -128.38 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.55 kcal Total: -76.14 1.55 -74.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519143162.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.498 kcal (2) G-P(sol) polarization free energy of solvation -76.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds