Wall clock time and date at job start Sun Mar 29 2020 22:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.08995 * 109.47549 * 177.96176 * 3 2 1 5 5 C 1.50703 * 109.47408 * 57.95980 * 3 2 1 6 6 H 1.08002 * 119.99971 * 240.00256 * 5 3 2 7 7 C 1.37873 * 119.99929 * 60.00218 * 5 3 2 8 8 N 1.31522 * 119.99916 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00376 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47079 * 59.99595 * 9 7 5 11 11 H 1.48492 * 109.47390 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46975 * 300.00112 * 9 7 5 13 13 N 1.46905 * 109.47030 * 297.96206 * 3 2 1 14 14 C 1.46895 * 110.99874 * 273.75304 * 13 3 2 15 15 C 1.50706 * 109.47003 * 174.92610 * 14 13 3 16 16 N 1.31805 * 119.12616 * 89.99758 * 15 14 13 17 17 C 1.32313 * 120.81750 * 179.97438 * 16 15 14 18 18 C 1.38616 * 119.10678 * 0.02562 * 17 16 15 19 19 C 1.38578 * 118.39661 * 359.97438 * 18 17 16 20 20 C 1.50705 * 120.44613 * 180.02562 * 19 18 17 21 21 N 1.31784 * 119.12036 * 269.72727 * 15 14 13 22 22 H 1.09001 * 109.47186 * 294.45202 * 1 2 3 23 23 H 1.09001 * 109.47073 * 174.45363 * 1 2 3 24 24 H 1.08998 * 109.47412 * 54.44835 * 1 2 3 25 25 H 1.09007 * 109.46940 * 119.99160 * 2 1 3 26 26 H 1.08992 * 109.46917 * 239.99449 * 2 1 3 27 27 H 0.97000 * 119.99663 * 180.02562 * 8 7 5 28 28 H 1.00900 * 111.00020 * 149.79370 * 13 3 2 29 29 H 1.09005 * 109.47061 * 294.91881 * 14 13 3 30 30 H 1.08997 * 109.47274 * 54.92396 * 14 13 3 31 31 H 1.08007 * 120.44647 * 179.97438 * 17 16 15 32 32 H 1.07998 * 120.80162 * 179.97438 * 18 17 16 33 33 H 1.09008 * 109.46689 * 90.00075 * 20 19 18 34 34 H 1.08990 * 109.47219 * 210.00061 * 20 19 18 35 35 H 1.09001 * 109.47231 * 330.00487 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1293 1.4428 0.0365 5 6 1.4968 2.1674 1.2044 6 1 0.8797 3.0442 1.0741 7 6 1.7876 1.7114 2.4726 8 7 2.5395 0.6440 2.6313 9 14 1.1138 2.6095 3.9656 10 1 -0.3704 2.6086 3.9155 11 1 1.5683 1.9245 5.2021 12 1 1.6082 4.0098 3.9657 13 7 1.5909 2.1206 -1.2233 14 6 2.5281 1.8856 -2.3298 15 6 1.9739 2.4894 -3.5945 16 7 2.2704 3.7387 -3.8925 17 6 1.8025 4.3021 -4.9944 18 6 0.9908 3.5604 -5.8385 19 6 0.7013 2.2504 -5.4915 20 6 -0.1758 1.4021 -6.3758 21 7 1.2100 1.7527 -4.3757 22 1 -0.3633 0.4254 0.9355 23 1 -0.3633 -1.0229 -0.0993 24 1 -0.3634 0.5975 -0.8361 25 1 1.8933 -0.5137 0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 2.7438 0.3230 3.5235 28 1 1.4615 3.1083 -1.0626 29 1 3.4879 2.3471 -2.0972 30 1 2.6647 0.8132 -2.4687 31 1 2.0489 5.3263 -5.2325 32 1 0.5936 3.9931 -6.7448 33 1 0.4422 0.8777 -7.1048 34 1 -0.7131 0.6761 -5.7657 35 1 -0.8908 2.0389 -6.8968 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000521639215.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:04 Heat of formation + Delta-G solvation = 39.099046 kcal Electronic energy + Delta-G solvation = -16314.961834 eV Core-core repulsion = 13733.777657 eV Total energy + Delta-G solvation = -2581.184177 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.87757 -36.34932 -34.33487 -33.34680 -31.83868 -30.42301 -28.53997 -27.03883 -24.96126 -23.19968 -23.07215 -21.52038 -18.97674 -17.53818 -16.64271 -15.91987 -15.16257 -15.04554 -14.74065 -14.05694 -13.66500 -13.51610 -13.15787 -12.82037 -12.58652 -12.36481 -12.08627 -11.76657 -11.35752 -10.91098 -10.82978 -10.57926 -10.39520 -10.33068 -10.06653 -9.71247 -9.36537 -9.24735 -9.03141 -8.74885 -8.43778 -7.25742 -5.98687 -4.03819 1.03190 1.23659 3.33816 3.38190 3.41109 3.86049 4.10090 4.27103 4.44376 4.53254 5.01448 5.13930 5.31865 5.33090 5.42330 5.50350 5.58829 5.77327 5.85761 6.17550 6.20341 6.56636 6.61075 6.78580 6.92048 7.21110 7.30616 7.32683 7.54101 7.78678 7.82255 7.87332 8.26654 8.36544 8.39014 8.65879 9.03587 9.60375 11.07395 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.037427 B = 0.005654 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.939786 B = 4950.813981 C = 5264.481093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.101 4.101 3 C 0.218 3.782 4 H 0.004 0.996 5 C -0.512 4.512 6 H 0.058 0.942 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.894 3.106 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.675 5.675 14 C 0.124 3.876 15 C 0.345 3.655 16 N -0.522 5.522 17 C 0.148 3.852 18 C -0.245 4.245 19 C 0.171 3.829 20 C -0.105 4.105 21 N -0.502 5.502 22 H 0.050 0.950 23 H 0.012 0.988 24 H 0.046 0.954 25 H 0.086 0.914 26 H 0.012 0.988 27 H 0.261 0.739 28 H 0.334 0.666 29 H 0.048 0.952 30 H 0.090 0.910 31 H 0.164 0.836 32 H 0.141 0.859 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.659 3.504 -15.840 16.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.140 4.140 3 C 0.111 3.889 4 H 0.021 0.979 5 C -0.551 4.551 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.722 3.278 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.308 5.308 14 C -0.007 4.007 15 C 0.078 3.922 16 N -0.237 5.237 17 C -0.018 4.018 18 C -0.268 4.268 19 C 0.024 3.976 20 C -0.163 4.163 21 N -0.217 5.217 22 H 0.069 0.931 23 H 0.031 0.969 24 H 0.065 0.935 25 H 0.104 0.896 26 H 0.031 0.969 27 H 0.071 0.929 28 H 0.151 0.849 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.181 0.819 32 H 0.159 0.841 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.620 2.455 -15.027 15.450 hybrid contribution 0.021 1.516 0.251 1.537 sum -2.599 3.971 -14.777 15.520 Atomic orbital electron populations 1.21423 0.97511 0.97140 1.01461 1.21424 0.95156 0.98011 0.99406 1.19155 0.93511 0.91687 0.84537 0.97857 1.21114 1.31750 1.11964 0.90273 0.92395 1.24862 0.95068 0.95020 0.98777 1.69883 1.37297 1.23064 1.22477 0.86623 0.79411 0.79736 0.82010 1.20252 1.21335 1.20385 1.60671 1.46580 1.16597 1.06905 1.20662 0.93911 1.00127 0.85990 1.23493 0.88202 0.85754 0.94754 1.68317 1.24214 1.12807 1.18372 1.23183 0.90294 0.99774 0.88596 1.22657 1.03958 0.96764 1.03373 1.21780 0.92352 0.92046 0.91409 1.20761 0.98037 0.99446 0.98011 1.68196 1.10000 1.39209 1.04303 0.93072 0.96857 0.93472 0.89600 0.96923 0.92904 0.84897 0.93396 0.89175 0.81910 0.84100 0.89989 0.89785 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.76 9.46 37.16 0.35 -2.41 16 2 C -0.10 -2.51 5.58 -26.73 -0.15 -2.66 16 3 C 0.22 5.52 2.30 -68.86 -0.16 5.36 16 4 H 0.00 0.10 7.84 -51.93 -0.41 -0.30 16 5 C -0.51 -13.93 7.34 -34.44 -0.25 -14.18 16 6 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 7 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 8 N -0.89 -25.21 11.34 55.43 0.63 -24.58 16 9 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.68 -14.98 5.50 -109.22 -0.60 -15.58 16 14 C 0.12 2.44 5.89 -4.98 -0.03 2.41 16 15 C 0.35 6.27 7.20 -157.19 -1.13 5.13 16 16 N -0.52 -8.74 10.33 -10.72 -0.11 -8.85 16 17 C 0.15 1.88 11.30 -17.20 -0.19 1.69 16 18 C -0.25 -2.78 9.86 -39.32 -0.39 -3.17 16 19 C 0.17 2.30 6.82 -82.24 -0.56 1.74 16 20 C -0.11 -0.99 10.22 36.01 0.37 -0.62 16 21 N -0.50 -8.67 10.27 -6.99 -0.07 -8.74 16 22 H 0.05 1.27 7.37 -51.93 -0.38 0.89 16 23 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 24 H 0.05 1.09 7.50 -51.93 -0.39 0.70 16 25 H 0.09 2.33 6.13 -51.93 -0.32 2.01 16 26 H 0.01 0.29 7.43 -51.93 -0.39 -0.10 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.33 7.48 8.24 -39.29 -0.32 7.16 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.79 7.40 -51.93 -0.38 1.40 16 31 H 0.16 1.45 8.06 -52.48 -0.42 1.03 16 32 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 LS Contribution 294.16 15.07 4.43 4.43 Total: -1.00 -30.24 294.16 -8.06 -38.31 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.08 Total: 3.71 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -2.24 Total: -5.03 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: -0.15 Total: -57.75 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.24 -8.06 -38.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521639215.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.406 kcal (2) G-P(sol) polarization free energy of solvation -30.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds