Wall clock time and date at job start Sun Mar 29 2020 22:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.08995 * 109.47549 * 177.96176 * 3 2 1 5 5 C 1.50703 * 109.47408 * 57.95980 * 3 2 1 6 6 H 1.08002 * 119.99971 * 240.00256 * 5 3 2 7 7 C 1.37873 * 119.99929 * 60.00218 * 5 3 2 8 8 N 1.31522 * 119.99916 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00376 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47079 * 59.99595 * 9 7 5 11 11 H 1.48492 * 109.47390 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46975 * 300.00112 * 9 7 5 13 13 N 1.46905 * 109.47030 * 297.96206 * 3 2 1 14 14 C 1.46895 * 110.99874 * 273.75304 * 13 3 2 15 15 C 1.50706 * 109.47003 * 174.92610 * 14 13 3 16 16 N 1.31805 * 119.12616 * 89.99758 * 15 14 13 17 17 C 1.32313 * 120.81750 * 179.97438 * 16 15 14 18 18 C 1.38616 * 119.10678 * 0.02562 * 17 16 15 19 19 C 1.38578 * 118.39661 * 359.97438 * 18 17 16 20 20 C 1.50705 * 120.44613 * 180.02562 * 19 18 17 21 21 N 1.31784 * 119.12036 * 269.72727 * 15 14 13 22 22 H 1.09001 * 109.47186 * 294.45202 * 1 2 3 23 23 H 1.09001 * 109.47073 * 174.45363 * 1 2 3 24 24 H 1.08998 * 109.47412 * 54.44835 * 1 2 3 25 25 H 1.09007 * 109.46940 * 119.99160 * 2 1 3 26 26 H 1.08992 * 109.46917 * 239.99449 * 2 1 3 27 27 H 0.97000 * 119.99663 * 180.02562 * 8 7 5 28 28 H 1.00900 * 111.00020 * 149.79370 * 13 3 2 29 29 H 1.09005 * 109.47061 * 294.91881 * 14 13 3 30 30 H 1.08997 * 109.47274 * 54.92396 * 14 13 3 31 31 H 1.08007 * 120.44647 * 179.97438 * 17 16 15 32 32 H 1.07998 * 120.80162 * 179.97438 * 18 17 16 33 33 H 1.09008 * 109.46689 * 90.00075 * 20 19 18 34 34 H 1.08990 * 109.47219 * 210.00061 * 20 19 18 35 35 H 1.09001 * 109.47231 * 330.00487 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1293 1.4428 0.0365 5 6 1.4968 2.1674 1.2044 6 1 0.8797 3.0442 1.0741 7 6 1.7876 1.7114 2.4726 8 7 2.5395 0.6440 2.6313 9 14 1.1138 2.6095 3.9656 10 1 -0.3704 2.6086 3.9155 11 1 1.5683 1.9245 5.2021 12 1 1.6082 4.0098 3.9657 13 7 1.5909 2.1206 -1.2233 14 6 2.5281 1.8856 -2.3298 15 6 1.9739 2.4894 -3.5945 16 7 2.2704 3.7387 -3.8925 17 6 1.8025 4.3021 -4.9944 18 6 0.9908 3.5604 -5.8385 19 6 0.7013 2.2504 -5.4915 20 6 -0.1758 1.4021 -6.3758 21 7 1.2100 1.7527 -4.3757 22 1 -0.3633 0.4254 0.9355 23 1 -0.3633 -1.0229 -0.0993 24 1 -0.3634 0.5975 -0.8361 25 1 1.8933 -0.5137 0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 2.7438 0.3230 3.5235 28 1 1.4615 3.1083 -1.0626 29 1 3.4879 2.3471 -2.0972 30 1 2.6647 0.8132 -2.4687 31 1 2.0489 5.3263 -5.2325 32 1 0.5936 3.9931 -6.7448 33 1 0.4422 0.8777 -7.1048 34 1 -0.7131 0.6761 -5.7657 35 1 -0.8908 2.0389 -6.8968 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000521639215.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:03 Heat of formation + Delta-G solvation = 18.882132 kcal Electronic energy + Delta-G solvation = -16315.838506 eV Core-core repulsion = 13733.777657 eV Total energy + Delta-G solvation = -2582.060848 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.98760 -38.19586 -35.49412 -34.87317 -33.49573 -32.18713 -29.51866 -28.76713 -26.69337 -25.05389 -24.24386 -22.78870 -20.95854 -18.79295 -18.38206 -17.14770 -16.85824 -16.26557 -16.12161 -15.84219 -15.18549 -15.04252 -14.45913 -14.11383 -13.95540 -13.75181 -13.56178 -13.10226 -13.09726 -12.78884 -12.67302 -12.41830 -12.02136 -11.82031 -11.54487 -11.50448 -11.31676 -10.83361 -10.54066 -10.32337 -10.16014 -9.10603 -8.09223 -6.21517 -0.05826 0.21543 1.43493 1.44783 1.52261 2.42691 2.71702 2.94761 3.19582 3.22674 3.66462 3.81366 4.09207 4.23187 4.41575 4.45404 4.60438 4.64614 4.73318 4.76950 4.80309 4.93489 4.97054 5.13476 5.28781 5.37342 5.53453 5.56261 5.70773 5.78843 5.86663 6.16844 6.25014 6.41333 6.69754 6.96376 7.22382 7.46452 8.96100 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.037427 B = 0.005654 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.939786 B = 4950.813981 C = 5264.481093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.096 4.096 3 C 0.224 3.776 4 H -0.029 1.029 5 C -0.526 4.526 6 H 0.054 0.946 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 0.956 3.044 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.670 5.670 14 C 0.131 3.869 15 C 0.322 3.678 16 N -0.549 5.549 17 C 0.137 3.863 18 C -0.222 4.222 19 C 0.152 3.848 20 C -0.101 4.101 21 N -0.534 5.534 22 H 0.032 0.968 23 H 0.035 0.965 24 H 0.046 0.954 25 H 0.061 0.939 26 H 0.021 0.979 27 H 0.262 0.738 28 H 0.331 0.669 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.202 0.798 32 H 0.190 0.810 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.047 4.730 -17.732 18.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.135 4.135 3 C 0.116 3.884 4 H -0.012 1.012 5 C -0.565 4.565 6 H 0.072 0.928 7 C -0.180 4.180 8 N -0.554 5.554 9 Si 0.782 3.218 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.301 5.301 14 C 0.000 4.000 15 C 0.054 3.946 16 N -0.265 5.265 17 C -0.028 4.028 18 C -0.243 4.243 19 C 0.006 3.994 20 C -0.158 4.158 21 N -0.250 5.250 22 H 0.051 0.949 23 H 0.054 0.946 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.039 0.961 27 H 0.071 0.929 28 H 0.148 0.852 29 H 0.059 0.941 30 H 0.099 0.901 31 H 0.219 0.781 32 H 0.207 0.793 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.017 3.690 -16.953 17.809 hybrid contribution 0.454 1.170 0.675 1.425 sum -3.563 4.860 -16.278 17.358 Atomic orbital electron populations 1.21265 0.96154 0.98396 1.00334 1.21301 0.96224 0.97438 0.98537 1.18955 0.91438 0.92346 0.85656 1.01163 1.21342 1.31793 1.12055 0.91277 0.92754 1.25602 0.95254 0.95697 1.01411 1.70012 1.38137 1.24184 1.23030 0.85640 0.78814 0.78688 0.78650 1.19785 1.20904 1.19819 1.60574 1.47221 1.16037 1.06267 1.20474 0.93297 0.99736 0.86480 1.22885 0.90198 0.86784 0.94763 1.68239 1.25332 1.12327 1.20556 1.23920 0.89922 1.01423 0.87497 1.23156 1.01681 0.95447 1.04030 1.22545 0.92401 0.93741 0.90710 1.20881 0.98079 0.99375 0.97486 1.68112 1.10742 1.40115 1.05991 0.94927 0.94578 0.93454 0.92052 0.96075 0.92886 0.85249 0.94115 0.90119 0.78098 0.79291 0.88352 0.91146 0.87183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.87 9.46 71.98 0.68 -4.19 16 2 C -0.10 -4.89 5.58 30.59 0.17 -4.72 16 3 C 0.22 11.74 2.30 44.17 0.10 11.84 16 4 H -0.03 -1.69 7.84 -2.39 -0.02 -1.71 16 5 C -0.53 -29.19 7.34 25.60 0.19 -29.00 16 6 H 0.05 2.99 7.60 -2.91 -0.02 2.97 16 7 C 0.02 1.11 5.30 84.65 0.45 1.55 16 8 N -0.91 -52.93 11.34 21.45 0.24 -52.69 16 9 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 13 N -0.67 -30.64 5.50 -499.45 -2.75 -33.39 16 14 C 0.13 5.38 5.89 85.56 0.50 5.88 16 15 C 0.32 11.78 7.20 138.75 1.00 12.78 16 16 N -0.55 -18.03 10.33 -187.83 -1.94 -19.97 16 17 C 0.14 3.11 11.30 84.71 0.96 4.07 16 18 C -0.22 -4.18 9.86 22.44 0.22 -3.95 16 19 C 0.15 3.72 6.82 42.56 0.29 4.01 16 20 C -0.10 -1.59 10.22 71.24 0.73 -0.86 16 21 N -0.53 -18.21 10.27 -176.02 -1.81 -20.01 16 22 H 0.03 1.61 7.37 -2.39 -0.02 1.59 16 23 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.05 2.18 7.50 -2.39 -0.02 2.16 16 25 H 0.06 3.43 6.13 -2.38 -0.01 3.41 16 26 H 0.02 1.00 7.43 -2.39 -0.02 0.98 16 27 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.33 15.28 8.24 -89.69 -0.74 14.55 16 29 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.08 3.37 7.40 -2.39 -0.02 3.35 16 31 H 0.20 2.80 8.06 -2.91 -0.02 2.77 16 32 H 0.19 1.68 8.06 -2.91 -0.02 1.65 16 33 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.11 1.01 8.10 -2.39 -0.02 0.99 16 Total: -1.00 -67.17 294.16 1.41 -65.77 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.34 Total: 16.85 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 5.29 Total: -2.60 kcal Atomic # 7 Polarization: -119.81 SS G_CDS: -6.25 Total: -126.06 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -67.17 1.41 -65.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521639215.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.647 kcal (2) G-P(sol) polarization free energy of solvation -67.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds