Wall clock time and date at job start Sun Mar 29 2020 21:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32342 * 120.44798 * 2 1 4 4 C 1.31780 * 120.81807 * 180.28278 * 3 2 1 5 5 N 1.31803 * 121.75773 * 359.71091 * 4 3 2 6 6 C 1.32323 * 120.81637 * 359.97438 * 5 4 3 7 7 C 1.38576 * 120.44635 * 179.71580 * 2 1 3 8 8 C 1.50708 * 120.80081 * 0.02562 * 7 2 1 9 9 H 1.08999 * 109.46904 * 324.72103 * 8 7 2 10 10 C 1.53003 * 109.46876 * 84.72235 * 8 7 2 11 11 N 1.46903 * 109.46830 * 204.72318 * 8 7 2 12 12 C 1.46898 * 110.99673 * 155.00071 * 11 8 7 13 13 C 1.53006 * 109.47006 * 179.97438 * 12 11 8 14 14 C 1.50698 * 109.47184 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00046 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99944 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47046 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46873 * 120.00118 * 18 16 14 21 21 H 1.48497 * 109.47510 * 240.00153 * 18 16 14 22 22 H 1.08996 * 109.47135 * 270.28319 * 1 2 3 23 23 H 1.08995 * 109.47123 * 30.28288 * 1 2 3 24 24 H 1.09006 * 109.46981 * 150.28192 * 1 2 3 25 25 H 1.08005 * 119.12333 * 179.68216 * 4 3 2 26 26 H 1.07999 * 120.45287 * 180.02562 * 6 5 4 27 27 H 1.08994 * 109.47006 * 299.99855 * 10 8 7 28 28 H 1.08998 * 109.47007 * 59.99936 * 10 8 7 29 29 H 1.08996 * 109.46579 * 179.97438 * 10 8 7 30 30 H 1.00895 * 111.00497 * 31.03993 * 11 8 7 31 31 H 1.09001 * 109.47062 * 59.99745 * 12 11 8 32 32 H 1.08993 * 109.47084 * 299.99192 * 12 11 8 33 33 H 1.09001 * 109.46801 * 300.00064 * 13 12 11 34 34 H 1.09001 * 109.46998 * 59.99660 * 13 12 11 35 35 H 0.96997 * 119.99752 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1776 1.1409 0.0000 4 6 3.4954 1.1494 -0.0056 5 7 4.1964 0.0332 -0.0057 6 6 3.5945 -1.1452 0.0003 7 6 2.2092 -1.1947 0.0059 8 6 1.4843 -2.5159 0.0119 9 1 0.5738 -2.4280 0.6047 10 6 1.1232 -2.9059 -1.4228 11 7 2.3515 -3.5476 0.5964 12 6 1.5559 -4.6453 1.1620 13 6 2.4918 -5.6981 1.7595 14 6 1.6757 -6.8240 2.3403 15 1 0.5974 -6.7921 2.2882 16 6 2.3056 -7.8953 2.9373 17 7 3.6187 -7.9344 3.0003 18 14 1.2940 -9.2912 3.6567 19 1 -0.1504 -9.0093 3.4580 20 1 1.6483 -10.5619 2.9745 21 1 1.5800 -9.4126 5.1088 22 1 -0.3633 0.0051 1.0276 23 1 -0.3633 0.8874 -0.5182 24 1 -0.3633 -0.8926 -0.5095 25 1 4.0149 2.0963 -0.0107 26 1 4.1747 -2.0561 0.0006 27 1 0.4798 -2.1404 -1.8564 28 1 2.0337 -2.9937 -2.0156 29 1 0.5993 -3.8617 -1.4185 30 1 2.9669 -3.1517 1.2910 31 1 0.9531 -5.0998 0.3758 32 1 0.9020 -4.2556 1.9420 33 1 3.1456 -6.0877 0.9791 34 1 3.0950 -5.2439 2.5456 35 1 4.0618 -8.6880 3.4207 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563417798.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:48 Heat of formation + Delta-G solvation = 32.333957 kcal Electronic energy + Delta-G solvation = -16075.148428 eV Core-core repulsion = 13493.670895 eV Total energy + Delta-G solvation = -2581.477533 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.22757 -37.14239 -34.56142 -33.66778 -32.24326 -30.22604 -28.71795 -28.02374 -24.95991 -24.02672 -22.81932 -20.78388 -20.56869 -17.71639 -16.90589 -16.31433 -15.82570 -15.29245 -14.70934 -14.41990 -13.80035 -13.73294 -13.19309 -13.16429 -12.90802 -12.62587 -12.46500 -12.21726 -11.95102 -11.55824 -11.10995 -10.98810 -10.64298 -10.56761 -10.48434 -10.05835 -9.52620 -9.28027 -9.25836 -9.15049 -8.39276 -8.00398 -6.03136 -4.06000 0.83779 1.02291 3.29083 3.36706 3.40168 3.69629 3.94408 4.14999 4.34394 4.46916 4.49719 4.68697 5.02293 5.19965 5.30913 5.33200 5.33286 5.44185 5.51281 5.67692 5.85227 5.88510 6.00917 6.21981 6.28472 6.35422 6.41519 6.90952 6.92811 7.35603 7.64334 7.72110 7.85012 8.02071 8.04211 8.38530 9.01324 9.58237 11.08286 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.042227 B = 0.004649 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.926172 B = 6021.217816 C = 6353.477017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.175 3.825 3 N -0.524 5.524 4 C 0.284 3.716 5 N -0.523 5.523 6 C 0.162 3.838 7 C -0.185 4.185 8 C 0.129 3.871 9 H 0.056 0.944 10 C -0.135 4.135 11 N -0.686 5.686 12 C 0.066 3.934 13 C 0.025 3.975 14 C -0.522 4.522 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.892 5.892 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.284 1.284 22 H 0.085 0.915 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.193 0.807 26 H 0.179 0.821 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.337 0.663 31 H 0.062 0.938 32 H 0.017 0.983 33 H 0.026 0.974 34 H 0.013 0.987 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.579 15.256 -6.881 17.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.028 3.972 3 N -0.239 5.239 4 C -0.004 4.004 5 N -0.237 5.237 6 C -0.003 4.003 7 C -0.190 4.190 8 C 0.018 3.982 9 H 0.074 0.926 10 C -0.193 4.193 11 N -0.318 5.318 12 C -0.062 4.062 13 C -0.013 4.013 14 C -0.561 4.561 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.210 1.210 22 H 0.103 0.897 23 H 0.100 0.900 24 H 0.103 0.897 25 H 0.210 0.790 26 H 0.196 0.804 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.155 0.845 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.032 0.968 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.856 15.698 -7.421 17.786 hybrid contribution -1.114 -1.150 1.296 2.060 sum -4.970 14.547 -6.125 16.548 Atomic orbital electron populations 1.20868 0.88093 1.04144 1.03791 1.21559 0.97501 0.87767 0.90333 1.68249 1.10512 1.30157 1.14938 1.24909 0.86801 0.97149 0.91513 1.68477 1.41867 0.99170 1.14161 1.23336 0.91775 0.96413 0.88826 1.21740 0.96517 0.97219 1.03507 1.20339 0.94257 0.86292 0.97321 0.92612 1.21785 1.01651 1.01277 0.94540 1.60775 1.21433 1.10257 1.39354 1.22233 0.96155 0.91362 0.96409 1.19078 0.94487 0.92007 0.95704 1.21190 0.93061 1.04476 1.37377 0.92691 1.24999 0.94877 0.98303 0.96135 1.69980 1.07690 1.31103 1.44379 0.86538 0.80402 0.82257 0.78805 1.19763 1.20947 1.21027 0.89670 0.89986 0.89709 0.79041 0.80390 0.92964 0.91884 0.91504 0.84481 0.91973 0.96442 0.95515 0.96825 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.49 36.01 0.34 -0.69 16 2 C 0.17 2.15 6.82 -82.25 -0.56 1.59 16 3 N -0.52 -6.72 10.38 -10.80 -0.11 -6.83 16 4 C 0.28 3.46 12.28 -92.16 -1.13 2.32 16 5 N -0.52 -7.14 10.44 -14.58 -0.15 -7.30 16 6 C 0.16 2.19 10.14 -17.20 -0.17 2.02 16 7 C -0.19 -2.40 4.95 -104.35 -0.52 -2.92 16 8 C 0.13 1.73 2.16 -68.86 -0.15 1.58 16 9 H 0.06 0.73 6.78 -51.93 -0.35 0.38 16 10 C -0.13 -1.65 9.23 37.16 0.34 -1.31 16 11 N -0.69 -11.26 5.63 -107.94 -0.61 -11.87 16 12 C 0.07 1.31 5.42 -3.82 -0.02 1.29 16 13 C 0.02 0.62 5.23 -27.88 -0.15 0.48 16 14 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 15 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 18 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.08 0.71 5.61 -51.93 -0.29 0.42 16 25 H 0.19 1.66 8.06 -52.48 -0.42 1.24 16 26 H 0.18 2.36 7.09 -52.49 -0.37 1.99 16 27 H 0.05 0.53 6.95 -51.93 -0.36 0.17 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.86 7.45 -51.93 -0.39 0.47 16 30 H 0.34 5.48 7.31 -39.29 -0.29 5.20 16 31 H 0.06 1.22 7.44 -51.93 -0.39 0.84 16 32 H 0.02 0.34 8.05 -51.93 -0.42 -0.08 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 292.38 15.07 4.41 4.41 Total: -1.00 -30.70 292.38 -8.11 -38.81 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -4.93 Total: 1.20 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -2.43 Total: -8.91 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: -0.14 Total: -51.86 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.70 -8.11 -38.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563417798.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.145 kcal (2) G-P(sol) polarization free energy of solvation -30.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds