Wall clock time and date at job start Sun Mar 29 2020 21:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32342 * 120.44798 * 2 1 4 4 C 1.31780 * 120.81807 * 180.28278 * 3 2 1 5 5 N 1.31803 * 121.75773 * 359.71091 * 4 3 2 6 6 C 1.32323 * 120.81637 * 359.97438 * 5 4 3 7 7 C 1.38576 * 120.44635 * 179.71580 * 2 1 3 8 8 C 1.50708 * 120.80081 * 0.02562 * 7 2 1 9 9 H 1.08999 * 109.46904 * 324.72103 * 8 7 2 10 10 C 1.53003 * 109.46876 * 84.72235 * 8 7 2 11 11 N 1.46903 * 109.46830 * 204.72318 * 8 7 2 12 12 C 1.46898 * 110.99673 * 155.00071 * 11 8 7 13 13 C 1.53006 * 109.47006 * 179.97438 * 12 11 8 14 14 C 1.50698 * 109.47184 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00046 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99944 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47046 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46873 * 120.00118 * 18 16 14 21 21 H 1.48497 * 109.47510 * 240.00153 * 18 16 14 22 22 H 1.08996 * 109.47135 * 270.28319 * 1 2 3 23 23 H 1.08995 * 109.47123 * 30.28288 * 1 2 3 24 24 H 1.09006 * 109.46981 * 150.28192 * 1 2 3 25 25 H 1.08005 * 119.12333 * 179.68216 * 4 3 2 26 26 H 1.07999 * 120.45287 * 180.02562 * 6 5 4 27 27 H 1.08994 * 109.47006 * 299.99855 * 10 8 7 28 28 H 1.08998 * 109.47007 * 59.99936 * 10 8 7 29 29 H 1.08996 * 109.46579 * 179.97438 * 10 8 7 30 30 H 1.00895 * 111.00497 * 31.03993 * 11 8 7 31 31 H 1.09001 * 109.47062 * 59.99745 * 12 11 8 32 32 H 1.08993 * 109.47084 * 299.99192 * 12 11 8 33 33 H 1.09001 * 109.46801 * 300.00064 * 13 12 11 34 34 H 1.09001 * 109.46998 * 59.99660 * 13 12 11 35 35 H 0.96997 * 119.99752 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1776 1.1409 0.0000 4 6 3.4954 1.1494 -0.0056 5 7 4.1964 0.0332 -0.0057 6 6 3.5945 -1.1452 0.0003 7 6 2.2092 -1.1947 0.0059 8 6 1.4843 -2.5159 0.0119 9 1 0.5738 -2.4280 0.6047 10 6 1.1232 -2.9059 -1.4228 11 7 2.3515 -3.5476 0.5964 12 6 1.5559 -4.6453 1.1620 13 6 2.4918 -5.6981 1.7595 14 6 1.6757 -6.8240 2.3403 15 1 0.5974 -6.7921 2.2882 16 6 2.3056 -7.8953 2.9373 17 7 3.6187 -7.9344 3.0003 18 14 1.2940 -9.2912 3.6567 19 1 -0.1504 -9.0093 3.4580 20 1 1.6483 -10.5619 2.9745 21 1 1.5800 -9.4126 5.1088 22 1 -0.3633 0.0051 1.0276 23 1 -0.3633 0.8874 -0.5182 24 1 -0.3633 -0.8926 -0.5095 25 1 4.0149 2.0963 -0.0107 26 1 4.1747 -2.0561 0.0006 27 1 0.4798 -2.1404 -1.8564 28 1 2.0337 -2.9937 -2.0156 29 1 0.5993 -3.8617 -1.4185 30 1 2.9669 -3.1517 1.2910 31 1 0.9531 -5.0998 0.3758 32 1 0.9020 -4.2556 1.9420 33 1 3.1456 -6.0877 0.9791 34 1 3.0950 -5.2439 2.5456 35 1 4.0618 -8.6880 3.4207 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563417798.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:47 Heat of formation + Delta-G solvation = 12.736609 kcal Electronic energy + Delta-G solvation = -16075.998233 eV Core-core repulsion = 13493.670895 eV Total energy + Delta-G solvation = -2582.327338 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.20309 -38.39549 -35.73520 -35.26735 -33.80861 -31.55832 -29.75126 -29.41001 -26.34171 -25.50066 -23.85338 -22.41538 -21.80631 -18.80227 -18.37353 -17.84956 -17.11940 -16.45046 -16.25132 -15.79053 -15.28985 -14.80594 -14.42466 -14.12389 -14.02998 -13.93061 -13.83903 -13.28852 -13.15202 -12.92077 -12.84180 -12.62239 -12.38420 -11.98587 -11.56777 -11.52622 -11.37015 -11.19918 -10.56289 -10.29226 -10.26612 -9.35460 -8.19389 -6.30459 -0.12582 0.03068 1.41591 1.42067 1.54997 2.41259 2.72716 3.03564 3.14817 3.17203 3.30081 3.53499 3.62181 3.99594 4.27708 4.34144 4.52104 4.54193 4.57064 4.63919 4.67981 4.86822 4.89017 4.98464 5.05717 5.11070 5.34225 5.46299 5.48691 5.68011 5.79335 5.95356 6.13786 6.25679 6.44016 6.87600 7.07517 7.39165 8.92935 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.042227 B = 0.004649 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.926172 B = 6021.217816 C = 6353.477017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.174 3.826 3 N -0.534 5.534 4 C 0.282 3.718 5 N -0.542 5.542 6 C 0.150 3.850 7 C -0.191 4.191 8 C 0.134 3.866 9 H 0.067 0.933 10 C -0.132 4.132 11 N -0.690 5.690 12 C 0.086 3.914 13 C 0.030 3.970 14 C -0.542 4.542 15 H 0.063 0.937 16 C 0.001 3.999 17 N -0.933 5.933 18 Si 0.965 3.035 19 H -0.260 1.260 20 H -0.279 1.279 21 H -0.280 1.280 22 H 0.094 0.906 23 H 0.093 0.907 24 H 0.095 0.905 25 H 0.223 0.777 26 H 0.173 0.827 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.336 0.664 31 H 0.066 0.934 32 H 0.022 0.978 33 H -0.004 1.004 34 H -0.011 1.011 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.470 15.950 -7.049 18.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.028 3.972 3 N -0.248 5.248 4 C -0.005 4.005 5 N -0.256 5.256 6 C -0.014 4.014 7 C -0.196 4.196 8 C 0.024 3.976 9 H 0.085 0.915 10 C -0.189 4.189 11 N -0.322 5.322 12 C -0.043 4.043 13 C -0.007 4.007 14 C -0.580 4.580 15 H 0.081 0.919 16 C -0.197 4.197 17 N -0.573 5.573 18 Si 0.790 3.210 19 H -0.184 1.184 20 H -0.205 1.205 21 H -0.206 1.206 22 H 0.113 0.887 23 H 0.112 0.888 24 H 0.114 0.886 25 H 0.239 0.761 26 H 0.190 0.810 27 H 0.096 0.904 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.154 0.846 31 H 0.085 0.915 32 H 0.040 0.960 33 H 0.015 0.985 34 H 0.007 0.993 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.755 16.408 -7.601 18.977 hybrid contribution -0.481 -1.285 1.324 1.907 sum -6.236 15.124 -6.277 17.522 Atomic orbital electron populations 1.20980 0.85856 1.05277 1.04698 1.22036 0.98970 0.87231 0.88984 1.68364 1.10759 1.30274 1.15450 1.25555 0.86955 0.97819 0.90197 1.68501 1.42430 0.99560 1.15124 1.23335 0.92318 0.96495 0.89288 1.21648 0.96160 0.97294 1.04468 1.20354 0.93937 0.85541 0.97791 0.91540 1.21774 1.01623 1.01857 0.93669 1.60675 1.21714 1.10846 1.38970 1.21828 0.94938 0.91091 0.96397 1.18934 0.94593 0.93077 0.94141 1.21650 0.93711 1.05320 1.37325 0.91926 1.25957 0.95994 1.01238 0.96542 1.70116 1.09602 1.32161 1.45398 0.85397 0.79216 0.78546 0.77863 1.18367 1.20493 1.20562 0.88715 0.88837 0.88605 0.76068 0.81032 0.90375 0.92857 0.92078 0.84554 0.91528 0.95997 0.98533 0.99293 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 9.49 71.24 0.68 -1.06 16 2 C 0.17 3.93 6.82 42.56 0.29 4.22 16 3 N -0.53 -12.67 10.38 -188.09 -1.95 -14.63 16 4 C 0.28 6.44 12.28 180.89 2.22 8.66 16 5 N -0.54 -14.48 10.44 -200.04 -2.09 -16.57 16 6 C 0.15 4.05 10.14 84.71 0.86 4.91 16 7 C -0.19 -4.72 4.95 -19.69 -0.10 -4.82 16 8 C 0.13 3.40 2.16 44.17 0.10 3.49 16 9 H 0.07 1.58 6.78 -2.39 -0.02 1.57 16 10 C -0.13 -2.99 9.23 71.98 0.66 -2.33 16 11 N -0.69 -22.56 5.63 -495.43 -2.79 -25.34 16 12 C 0.09 3.38 5.42 86.31 0.47 3.85 16 13 C 0.03 1.56 5.23 29.85 0.16 1.71 16 14 C -0.54 -30.25 9.11 25.60 0.23 -30.02 16 15 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 16 C 0.00 0.03 5.46 84.65 0.46 0.49 16 17 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 18 Si 0.97 43.69 29.54 68.60 2.03 45.72 16 19 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.10 1.28 5.61 -2.38 -0.01 1.27 16 25 H 0.22 3.37 8.06 -2.91 -0.02 3.35 16 26 H 0.17 4.70 7.09 -2.91 -0.02 4.68 16 27 H 0.08 1.37 6.95 -2.39 -0.02 1.35 16 28 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.06 1.46 7.45 -2.39 -0.02 1.45 16 30 H 0.34 11.11 7.31 -89.70 -0.66 10.45 16 31 H 0.07 2.56 7.44 -2.39 -0.02 2.54 16 32 H 0.02 0.84 8.05 -2.39 -0.02 0.82 16 33 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 34 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 35 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -65.76 292.38 1.94 -63.82 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.43 Total: 14.19 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: 6.03 Total: -10.88 kcal Atomic # 7 Polarization: -106.31 SS G_CDS: -6.54 Total: -112.85 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -65.76 1.94 -63.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563417798.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.555 kcal (2) G-P(sol) polarization free energy of solvation -65.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds