Wall clock time and date at job start Sun Mar 29 2020 22:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99936 * 2 1 4 4 C 1.39003 * 120.00186 * 179.72032 * 2 1 3 5 5 C 1.39143 * 119.70476 * 4.73315 * 4 2 1 6 6 C 1.38288 * 119.09571 * 179.75144 * 5 4 2 7 7 C 1.38889 * 118.50742 * 0.50957 * 6 5 4 8 8 C 1.38023 * 119.32739 * 359.73155 * 7 6 5 9 9 C 1.50698 * 119.57128 * 180.02562 * 8 7 6 10 10 N 1.46893 * 109.47191 * 95.01592 * 9 8 7 11 11 C 1.46904 * 111.00032 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47268 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00211 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99978 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99909 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99923 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47302 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.47122 * 120.00024 * 16 14 12 19 19 H 1.48495 * 109.47350 * 239.99902 * 16 14 12 20 20 N 1.31968 * 120.85553 * 0.02562 * 8 7 6 21 21 H 1.08999 * 109.46892 * 90.00398 * 1 2 3 22 22 H 1.09000 * 109.46803 * 209.99571 * 1 2 3 23 23 H 1.09000 * 109.47214 * 330.00364 * 1 2 3 24 24 H 1.09004 * 109.46973 * 0.02562 * 3 2 1 25 25 H 1.08995 * 109.47424 * 119.99471 * 3 2 1 26 26 H 1.08998 * 109.47492 * 239.99896 * 3 2 1 27 27 H 1.08002 * 120.45106 * 359.97237 * 5 4 2 28 28 H 1.08002 * 120.75127 * 180.21962 * 6 5 4 29 29 H 1.08003 * 120.33514 * 179.74904 * 7 6 5 30 30 H 1.08996 * 109.47006 * 215.02035 * 9 8 7 31 31 H 1.09003 * 109.47068 * 335.02016 * 9 8 7 32 32 H 1.00899 * 111.00598 * 303.95368 * 10 9 8 33 33 H 1.08997 * 109.47013 * 300.00317 * 11 10 9 34 34 H 1.09000 * 109.47032 * 60.00474 * 11 10 9 35 35 H 0.97000 * 120.00042 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1601 -1.2038 0.0059 5 6 1.4618 -2.4036 -0.0880 6 6 2.1663 -3.5936 -0.0862 7 6 3.5502 -3.5445 0.0206 8 6 4.1778 -2.3189 0.1154 9 6 5.6792 -2.2591 0.2309 10 7 6.2655 -2.0655 -1.1019 11 6 7.7313 -2.0018 -1.0280 12 6 8.2958 -1.8025 -2.4110 13 1 7.6322 -1.7307 -3.2600 14 6 9.6597 -1.7127 -2.5926 15 7 10.4678 -1.8005 -1.5588 16 14 10.3594 -1.4663 -4.3069 17 1 9.2485 -1.3990 -5.2901 18 1 11.1337 -0.1997 -4.3483 19 1 11.2523 -2.6035 -4.6453 20 7 3.4802 -1.1987 0.1063 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.4892 2.0972 0.0005 25 1 2.8241 1.3266 0.8900 26 1 2.8242 1.3265 -0.8899 27 1 0.3845 -2.4054 -0.1648 28 1 1.6517 -4.5401 -0.1614 29 1 4.1293 -4.4560 0.0291 30 1 5.9611 -1.4272 0.8763 31 1 6.0481 -3.1916 0.6582 32 1 5.9664 -2.7900 -1.7373 33 1 8.0271 -1.1678 -0.3916 34 1 8.1148 -2.9323 -0.6094 35 1 11.4273 -1.7377 -1.6866 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563806446.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:53 Heat of formation + Delta-G solvation = 24.866087 kcal Electronic energy + Delta-G solvation = -15879.461829 eV Core-core repulsion = 13297.660465 eV Total energy + Delta-G solvation = -2581.801365 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.23399 -37.92765 -36.70291 -34.62486 -33.30708 -31.76111 -29.46470 -28.66296 -26.38008 -25.94908 -23.58005 -22.83443 -21.99418 -18.74005 -18.07229 -17.56755 -16.73731 -16.54633 -16.26225 -16.04920 -15.35378 -15.15080 -15.00992 -14.37847 -14.02701 -13.85027 -13.45376 -13.34139 -13.19355 -13.05222 -12.84639 -12.64563 -12.55616 -12.40167 -12.04359 -11.34772 -10.94266 -10.67726 -10.46355 -10.22269 -9.14708 -8.45781 -8.22908 -6.34424 0.33300 0.61790 1.40742 1.41990 1.56067 2.08126 2.40082 2.94062 3.10056 3.42003 3.74065 4.00456 4.12533 4.29652 4.30392 4.45232 4.47867 4.55769 4.61649 4.67038 4.80751 4.88339 4.93501 4.98531 5.06738 5.16816 5.24771 5.41021 5.59368 5.70272 5.99537 6.11927 6.39603 6.43831 6.67096 6.85964 7.35624 7.36223 8.88901 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.033696 B = 0.004751 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.756209 B = 5891.850149 C = 6263.926023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.628 5.628 3 C 0.109 3.891 4 C 0.376 3.624 5 C -0.240 4.240 6 C -0.030 4.030 7 C -0.234 4.234 8 C 0.168 3.832 9 C 0.111 3.889 10 N -0.681 5.681 11 C 0.210 3.790 12 C -0.536 4.536 13 H 0.061 0.939 14 C 0.003 3.997 15 N -0.933 5.933 16 Si 0.975 3.025 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.274 1.274 20 N -0.559 5.559 21 H 0.059 0.941 22 H 0.080 0.920 23 H 0.090 0.910 24 H 0.101 0.899 25 H 0.039 0.961 26 H 0.032 0.968 27 H 0.161 0.839 28 H 0.170 0.830 29 H 0.141 0.859 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.334 0.666 33 H -0.001 1.001 34 H -0.031 1.031 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.287 -0.676 3.686 22.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.343 5.343 3 C -0.034 4.034 4 C 0.141 3.859 5 C -0.265 4.265 6 C -0.056 4.056 7 C -0.257 4.257 8 C 0.030 3.970 9 C -0.019 4.019 10 N -0.312 5.312 11 C 0.082 3.918 12 C -0.574 4.574 13 H 0.079 0.921 14 C -0.196 4.196 15 N -0.573 5.573 16 Si 0.799 3.201 17 H -0.189 1.189 18 H -0.203 1.203 19 H -0.199 1.199 20 N -0.278 5.278 21 H 0.077 0.923 22 H 0.099 0.901 23 H 0.108 0.892 24 H 0.120 0.880 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.179 0.821 28 H 0.187 0.813 29 H 0.159 0.841 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.152 0.848 33 H 0.017 0.983 34 H -0.013 1.013 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.863 0.998 3.823 22.217 hybrid contribution 0.844 -1.335 -0.390 1.627 sum -21.019 -0.337 3.434 21.300 Atomic orbital electron populations 1.21930 0.76150 1.04378 1.02381 1.46488 1.06392 1.02480 1.78945 1.21443 0.96812 0.84757 1.00428 1.18795 0.88036 0.87562 0.91503 1.21733 1.02126 0.91106 1.11510 1.21673 0.92897 0.99238 0.91753 1.21867 0.96545 0.98085 1.09212 1.20735 0.94751 0.88482 0.93042 1.20717 0.88886 1.00107 0.92209 1.60464 1.09923 1.52392 1.08404 1.19232 0.82691 0.93441 0.96392 1.21526 0.92161 1.49881 0.93856 0.92072 1.25951 0.97248 0.94606 1.01760 1.70094 1.03911 1.51188 1.32124 0.85249 0.78207 0.77913 0.78688 1.18907 1.20318 1.19902 1.66852 1.07381 1.32569 1.20958 0.92267 0.90111 0.89165 0.88042 0.94217 0.94879 0.82130 0.81298 0.84131 0.92029 0.93348 0.84847 0.98286 1.01327 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.25 10.04 127.77 1.28 2.53 16 2 N -0.63 -15.07 3.39 -753.96 -2.56 -17.62 16 3 C 0.11 2.61 10.19 127.77 1.30 3.91 16 4 C 0.38 11.18 7.37 133.07 0.98 12.16 16 5 C -0.24 -5.51 9.19 22.50 0.21 -5.31 16 6 C -0.03 -0.67 10.17 22.44 0.23 -0.44 16 7 C -0.23 -6.66 9.71 22.37 0.22 -6.44 16 8 C 0.17 6.04 6.29 42.49 0.27 6.30 16 9 C 0.11 4.50 5.99 85.56 0.51 5.02 16 10 N -0.68 -32.47 6.48 -522.01 -3.38 -35.85 16 11 C 0.21 11.89 5.44 85.56 0.47 12.36 16 12 C -0.54 -31.96 9.32 25.60 0.24 -31.72 16 13 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 14 C 0.00 0.15 5.46 84.66 0.46 0.61 16 15 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 16 Si 0.98 45.47 29.54 68.60 2.03 47.50 16 17 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 N -0.56 -20.71 9.48 -181.34 -1.72 -22.43 16 21 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 22 H 0.08 0.87 6.36 -2.39 -0.02 0.86 16 23 H 0.09 0.83 7.92 -2.39 -0.02 0.81 16 24 H 0.10 1.59 7.79 -2.38 -0.02 1.57 16 25 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.16 2.48 6.25 -2.91 -0.02 2.46 16 28 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 29 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 30 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.05 1.83 8.04 -2.39 -0.02 1.81 16 32 H 0.33 15.11 8.72 -89.69 -0.78 14.32 16 33 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H -0.03 -1.83 8.14 -2.39 -0.02 -1.85 16 35 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -73.38 298.82 1.11 -72.27 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.29 Total: 14.47 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: 6.16 Total: -1.02 kcal Atomic # 7 Polarization: -125.85 SS G_CDS: -7.37 Total: -133.22 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -73.38 1.11 -72.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563806446.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.135 kcal (2) G-P(sol) polarization free energy of solvation -73.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds