Wall clock time and date at job start Sun Mar 29 2020 22:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35194 * 126.00884 * 2 1 4 4 C 1.34571 * 107.62487 * 179.97438 * 3 2 1 5 5 C 1.40497 * 108.03353 * 0.08685 * 4 3 2 6 6 N 1.30134 * 108.22720 * 359.88096 * 5 4 3 7 7 C 1.50815 * 123.46354 * 179.71374 * 5 4 3 8 8 C 1.53372 * 108.27151 * 343.36294 * 7 5 4 9 9 C 1.53025 * 109.69874 * 50.66683 * 8 7 5 10 10 C 1.50880 * 128.33063 * 180.13961 * 4 3 2 11 11 H 1.09000 * 109.71784 * 283.10091 * 10 4 3 12 12 N 1.46905 * 109.71740 * 43.75018 * 10 4 3 13 13 C 1.46897 * 110.99726 * 273.74057 * 12 10 4 14 14 C 1.50704 * 109.46852 * 180.02562 * 13 12 10 15 15 H 1.07993 * 119.99896 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99798 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00040 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99663 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47530 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.46898 * 120.00078 * 18 16 14 21 21 H 1.48504 * 109.47086 * 239.99587 * 18 16 14 22 22 H 1.09004 * 109.47230 * 270.02188 * 1 2 3 23 23 H 1.08996 * 109.47424 * 30.01581 * 1 2 3 24 24 H 1.09002 * 109.47495 * 150.02419 * 1 2 3 25 25 H 1.08002 * 126.18672 * 359.95196 * 3 2 1 26 26 H 1.09005 * 109.64668 * 223.68768 * 7 5 4 27 27 H 1.08998 * 109.72112 * 103.08738 * 7 5 4 28 28 H 1.09002 * 109.42674 * 290.61063 * 8 7 5 29 29 H 1.09002 * 109.42225 * 170.72300 * 8 7 5 30 30 H 1.08999 * 109.42932 * 48.38098 * 9 8 7 31 31 H 1.09006 * 109.42745 * 168.22351 * 9 8 7 32 32 H 1.00893 * 111.00087 * 149.78157 * 12 10 4 33 33 H 1.09001 * 109.47164 * 299.99445 * 13 12 10 34 34 H 1.08998 * 109.47814 * 59.99875 * 13 12 10 35 35 H 0.97003 * 119.99656 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2598 1.0936 0.0000 4 6 3.5368 0.6692 0.0006 5 6 3.5282 -0.7357 -0.0011 6 7 2.2897 -1.1352 0.0000 7 6 4.7812 -1.5750 -0.0073 8 6 5.9556 -0.6827 -0.4281 9 6 5.9644 0.5917 0.4189 10 6 4.7981 1.4972 0.0037 11 1 4.9790 1.8955 -0.9947 12 7 4.6631 2.6024 0.9621 13 6 4.0140 3.7634 0.3387 14 6 3.8938 4.8745 1.3498 15 1 4.2622 4.7322 2.3549 16 6 3.3134 6.0728 0.9914 17 7 2.8651 6.2463 -0.2328 18 14 3.1637 7.4497 2.2448 19 1 3.7391 7.0053 3.5396 20 1 3.9007 8.6438 1.7587 21 1 1.7315 7.7946 2.4326 22 1 -0.3634 0.0004 1.0277 23 1 -0.3634 0.8898 -0.5140 24 1 -0.3634 -0.8902 -0.5135 25 1 1.9295 2.1219 -0.0007 26 1 4.6697 -2.3949 -0.7169 27 1 4.9617 -1.9739 0.9909 28 1 5.8509 -0.4180 -1.4803 29 1 6.8914 -1.2220 -0.2813 30 1 5.8620 0.3282 1.4716 31 1 6.9055 1.1207 0.2683 32 1 5.5589 2.8547 1.3516 33 1 4.6129 4.1045 -0.5058 34 1 3.0211 3.4806 -0.0107 35 1 2.4571 7.0894 -0.4850 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564445251.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:48 Heat of formation + Delta-G solvation = 46.647145 kcal Electronic energy + Delta-G solvation = -16635.244351 eV Core-core repulsion = 14054.387484 eV Total energy + Delta-G solvation = -2580.856867 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.34416 -38.32057 -36.16035 -34.46298 -33.24802 -31.46707 -29.65768 -28.15346 -27.14392 -24.21709 -23.00911 -22.59632 -21.51948 -19.68486 -18.45871 -17.54696 -16.69145 -16.62526 -15.93886 -15.71997 -15.25269 -15.18885 -14.77831 -14.22178 -13.88472 -13.73467 -13.51840 -13.23591 -13.19884 -12.81554 -12.69713 -12.42429 -12.17323 -12.04144 -11.76542 -11.50927 -11.36850 -10.98862 -10.64567 -10.11928 -9.24014 -9.01845 -8.21103 -6.31186 0.97706 1.40757 1.41549 1.55189 1.67617 1.85685 2.40740 3.12022 3.49195 3.68992 3.90892 4.00590 4.19008 4.24138 4.39702 4.40725 4.56568 4.60539 4.62576 4.74811 4.79771 4.99353 5.05230 5.15206 5.21386 5.24054 5.36544 5.48401 5.48976 5.65997 5.82269 6.07280 6.16214 6.52501 6.77545 6.82025 6.96167 7.39651 8.90098 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.026381 B = 0.006971 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.106677 B = 4015.403133 C = 4813.056164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.393 5.393 3 C 0.059 3.941 4 C -0.231 4.231 5 C 0.072 3.928 6 N -0.321 5.321 7 C -0.033 4.033 8 C -0.103 4.103 9 C -0.112 4.112 10 C 0.159 3.841 11 H 0.022 0.978 12 N -0.682 5.682 13 C 0.209 3.791 14 C -0.532 4.532 15 H 0.062 0.938 16 C 0.004 3.996 17 N -0.932 5.932 18 Si 0.969 3.031 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.279 1.279 22 H 0.081 0.919 23 H 0.097 0.903 24 H 0.101 0.899 25 H 0.161 0.839 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.337 0.663 33 H -0.044 1.044 34 H 0.011 0.989 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.796 -13.663 -0.197 13.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.176 5.176 3 C -0.086 4.086 4 C -0.243 4.243 5 C -0.096 4.096 6 N -0.143 5.143 7 C -0.072 4.072 8 C -0.142 4.142 9 C -0.150 4.150 10 C 0.048 3.952 11 H 0.040 0.960 12 N -0.313 5.313 13 C 0.082 3.918 14 C -0.570 4.570 15 H 0.080 0.920 16 C -0.194 4.194 17 N -0.573 5.573 18 Si 0.793 3.207 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.205 1.205 22 H 0.099 0.901 23 H 0.115 0.885 24 H 0.119 0.881 25 H 0.178 0.822 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.079 0.921 29 H 0.124 0.876 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.155 0.845 33 H -0.027 1.027 34 H 0.029 0.971 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.143 -14.764 -0.030 14.765 hybrid contribution 0.497 2.358 -0.256 2.423 sum 0.640 -12.406 -0.287 12.426 Atomic orbital electron populations 1.22072 0.72478 1.05443 1.04196 1.48767 1.07491 1.02740 1.58636 1.22304 0.91909 0.93136 1.01222 1.20205 0.94685 0.93954 1.15487 1.22838 0.94219 0.93600 0.98940 1.76800 1.01773 1.09031 1.26697 1.20240 0.87043 0.96191 1.03677 1.21516 0.98466 0.94798 0.99404 1.21715 0.96182 0.96154 1.00932 1.19897 0.91767 0.90483 0.93080 0.95994 1.60552 1.27195 1.08369 1.35158 1.19309 0.93055 0.87213 0.92248 1.21589 1.38982 0.98345 0.98116 0.92013 1.25881 0.95010 1.01193 0.97356 1.70095 1.41295 1.26217 1.19676 0.85346 0.77840 0.78418 0.79064 1.18866 1.20354 1.20476 0.90098 0.88452 0.88077 0.82216 0.88697 0.88719 0.92139 0.87586 0.91074 0.90541 0.84536 1.02653 0.97113 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.35 11.47 127.77 1.47 3.81 16 2 N -0.39 -13.61 4.02 -369.99 -1.49 -15.10 16 3 C 0.06 2.35 10.76 83.33 0.90 3.25 16 4 C -0.23 -8.89 5.58 -20.10 -0.11 -9.00 16 5 C 0.07 2.43 7.10 43.40 0.31 2.74 16 6 N -0.32 -11.37 12.56 -47.23 -0.59 -11.97 16 7 C -0.03 -0.77 6.30 30.01 0.19 -0.58 16 8 C -0.10 -2.21 5.87 30.73 0.18 -2.03 16 9 C -0.11 -3.06 5.15 30.73 0.16 -2.90 16 10 C 0.16 5.95 2.86 44.35 0.13 6.08 16 11 H 0.02 0.91 7.81 -2.39 -0.02 0.89 16 12 N -0.68 -29.92 6.23 -498.49 -3.10 -33.03 16 13 C 0.21 11.18 5.15 85.56 0.44 11.62 16 14 C -0.53 -30.25 9.32 25.60 0.24 -30.02 16 15 H 0.06 3.45 7.81 -2.91 -0.02 3.42 16 16 C 0.00 0.21 5.46 84.65 0.46 0.68 16 17 N -0.93 -55.75 13.29 21.45 0.28 -55.46 16 18 Si 0.97 44.16 29.54 68.60 2.03 46.19 16 19 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.16 6.93 5.94 -2.91 -0.02 6.92 16 26 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 27 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 29 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 1.97 8.10 -2.39 -0.02 1.95 16 31 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.34 13.82 8.36 -89.70 -0.75 13.07 16 33 H -0.04 -2.57 8.06 -2.39 -0.02 -2.59 16 34 H 0.01 0.62 5.48 -2.39 -0.01 0.61 16 35 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -69.21 286.94 1.81 -67.39 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.33 Total: 18.34 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: 4.35 Total: -16.37 kcal Atomic # 7 Polarization: -110.65 SS G_CDS: -4.90 Total: -115.55 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -69.21 1.81 -67.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564445251.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.040 kcal (2) G-P(sol) polarization free energy of solvation -69.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds