Wall clock time and date at job start Sun Mar 29 2020 22:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35190 * 126.00056 * 2 1 4 4 C 1.34578 * 107.61850 * 180.02562 * 3 2 1 5 5 C 1.40488 * 108.03354 * 359.89992 * 4 3 2 6 6 N 1.30126 * 108.23073 * 0.12679 * 5 4 3 7 7 C 1.50946 * 123.48469 * 180.16056 * 5 4 3 8 8 C 1.53369 * 108.20650 * 16.60621 * 7 5 4 9 9 C 1.53024 * 109.75341 * 309.35690 * 8 7 5 10 10 C 1.50881 * 128.33054 * 179.71370 * 4 3 2 11 11 H 1.08998 * 109.71436 * 77.01970 * 10 4 3 12 12 N 1.46905 * 109.71779 * 316.41642 * 10 4 3 13 13 C 1.46897 * 110.99679 * 84.99669 * 12 10 4 14 14 C 1.50699 * 109.46897 * 180.02562 * 13 12 10 15 15 H 1.08000 * 120.00089 * 0.02562 * 14 13 12 16 16 C 1.37884 * 120.00003 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00209 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99800 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47108 * 90.00432 * 18 16 14 20 20 H 1.48500 * 109.47225 * 210.00161 * 18 16 14 21 21 H 1.48494 * 109.47538 * 330.00104 * 18 16 14 22 22 H 1.09004 * 109.46729 * 270.02121 * 1 2 3 23 23 H 1.08994 * 109.47304 * 30.02027 * 1 2 3 24 24 H 1.09005 * 109.47068 * 150.02614 * 1 2 3 25 25 H 1.08003 * 126.19511 * 0.07765 * 3 2 1 26 26 H 1.09002 * 109.71891 * 136.28787 * 7 5 4 27 27 H 1.09000 * 109.71775 * 256.93437 * 7 5 4 28 28 H 1.09003 * 109.42547 * 69.43674 * 8 7 5 29 29 H 1.09001 * 109.42986 * 189.26209 * 8 7 5 30 30 H 1.09009 * 109.42142 * 311.64187 * 9 8 7 31 31 H 1.08993 * 109.43071 * 191.80037 * 9 8 7 32 32 H 1.00895 * 111.00074 * 208.95071 * 12 10 4 33 33 H 1.08997 * 109.47794 * 299.99804 * 13 12 10 34 34 H 1.09002 * 109.47417 * 60.00327 * 13 12 10 35 35 H 0.97000 * 120.00052 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2597 1.0937 0.0000 4 6 3.5368 0.6693 -0.0006 5 6 3.5282 -0.7355 0.0014 6 7 2.2899 -1.1351 0.0003 7 6 4.7821 -1.5760 0.0049 8 6 5.9567 -0.6825 0.4223 9 6 5.9634 0.5920 -0.4247 10 6 4.7980 1.4974 -0.0067 11 1 4.9808 1.8963 0.9910 12 7 4.6607 2.6025 -0.9648 13 6 3.9863 3.7528 -0.3484 14 6 3.8632 4.8637 -1.3592 15 1 4.2472 4.7286 -2.3596 16 6 3.2603 6.0527 -1.0069 17 7 2.7932 6.2174 0.2113 18 14 3.1085 7.4300 -2.2597 19 1 1.8287 7.2874 -2.9994 20 1 3.1328 8.7399 -1.5606 21 1 4.2431 7.3577 -3.2150 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8897 -0.5141 24 1 -0.3633 -0.8903 -0.5134 25 1 1.9294 2.1220 0.0012 26 1 4.6733 -2.3958 0.7150 27 1 4.9603 -1.9748 -0.9937 28 1 5.8547 -0.4176 1.4747 29 1 6.8926 -1.2212 0.2741 30 1 5.8584 0.3283 -1.4772 31 1 6.9048 1.1209 -0.2764 32 1 5.5583 2.8686 -1.3410 33 1 2.9926 3.4550 -0.0138 34 1 4.5681 4.1006 0.5052 35 1 2.3694 7.0540 0.4593 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564445254.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:51 Heat of formation + Delta-G solvation = 68.793313 kcal Electronic energy + Delta-G solvation = -16642.134732 eV Core-core repulsion = 14062.238195 eV Total energy + Delta-G solvation = -2579.896537 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.98237 -36.92552 -34.55824 -32.54868 -31.99330 -29.90252 -28.17127 -26.79808 -25.48225 -22.62983 -21.54410 -21.09753 -20.07056 -18.42431 -16.35807 -16.15595 -15.32148 -14.67914 -14.63654 -14.48133 -13.79869 -13.63217 -13.33031 -12.73486 -12.49069 -12.36768 -12.20740 -11.87712 -11.64710 -11.09682 -11.03212 -10.77457 -10.75067 -10.57148 -10.38887 -10.01151 -9.72383 -9.12031 -8.77547 -8.49255 -7.79760 -7.23345 -6.04983 -4.06382 2.38703 2.90565 3.26964 3.30610 3.36741 3.40893 4.41996 4.68401 5.06061 5.08216 5.16372 5.29743 5.33487 5.35350 5.56537 5.61586 5.65861 5.79908 5.79991 5.94133 6.05555 6.11196 6.18579 6.27614 6.56159 6.68525 6.72881 7.10203 7.31327 7.43605 7.53590 7.79981 8.13026 8.18550 8.44200 8.65823 9.04028 9.58668 11.05800 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.026369 B = 0.007001 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.590904 B = 3998.534703 C = 4799.124909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.392 5.392 3 C 0.079 3.921 4 C -0.211 4.211 5 C 0.074 3.926 6 N -0.308 5.308 7 C -0.033 4.033 8 C -0.111 4.111 9 C -0.118 4.118 10 C 0.162 3.838 11 H 0.040 0.960 12 N -0.684 5.684 13 C 0.193 3.807 14 C -0.513 4.513 15 H 0.062 0.938 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.897 3.103 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.067 0.933 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.181 0.819 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.331 0.669 33 H 0.029 0.971 34 H -0.014 1.014 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.230 -12.481 0.985 12.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.175 5.175 3 C -0.065 4.065 4 C -0.223 4.223 5 C -0.094 4.094 6 N -0.130 5.130 7 C -0.072 4.072 8 C -0.150 4.150 9 C -0.156 4.156 10 C 0.050 3.950 11 H 0.058 0.942 12 N -0.314 5.314 13 C 0.067 3.933 14 C -0.551 4.551 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.725 3.275 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.198 1.198 22 H 0.086 0.914 23 H 0.104 0.896 24 H 0.100 0.900 25 H 0.198 0.802 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.148 0.852 33 H 0.047 0.953 34 H 0.004 0.996 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.409 -13.562 0.818 13.593 hybrid contribution 0.745 2.046 -0.025 2.178 sum 0.336 -11.516 0.792 11.548 Atomic orbital electron populations 1.21720 0.74912 1.04013 1.02700 1.48422 1.06041 1.03622 1.59448 1.22490 0.90867 0.93283 0.99824 1.19972 0.94784 0.92699 1.14851 1.22229 0.93097 0.93973 1.00132 1.76840 1.01246 1.08643 1.26238 1.20040 0.88883 0.96115 1.02140 1.21518 0.97093 0.96020 1.00363 1.21728 0.97668 0.95634 1.00572 1.19786 0.89755 0.90857 0.94565 0.94241 1.60653 1.25845 1.09531 1.35406 1.19656 0.93897 0.86288 0.93503 1.21225 1.37878 0.97848 0.98193 0.91970 1.24980 0.95637 0.98560 0.95371 1.69957 1.39790 1.25953 1.18123 0.86510 0.78519 0.81203 0.81236 1.20703 1.21329 1.19840 0.91443 0.89568 0.89977 0.80196 0.90663 0.90280 0.91723 0.91372 0.91048 0.91991 0.85205 0.95337 0.99620 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.34 11.47 59.85 0.69 2.03 16 2 N -0.39 -6.82 4.02 -68.29 -0.27 -7.10 16 3 C 0.08 1.52 10.74 -17.37 -0.19 1.34 16 4 C -0.21 -4.03 5.58 -104.98 -0.59 -4.62 16 5 C 0.07 1.29 7.10 -82.35 -0.58 0.71 16 6 N -0.31 -5.62 12.56 33.75 0.42 -5.19 16 7 C -0.03 -0.43 6.31 -27.57 -0.17 -0.61 16 8 C -0.11 -1.36 5.86 -26.53 -0.16 -1.52 16 9 C -0.12 -1.72 5.16 -26.52 -0.14 -1.85 16 10 C 0.16 3.00 2.85 -68.58 -0.20 2.80 16 11 H 0.04 0.78 7.82 -51.93 -0.41 0.37 16 12 N -0.68 -14.67 6.23 -108.92 -0.68 -15.34 16 13 C 0.19 4.94 5.16 -4.98 -0.03 4.92 16 14 C -0.51 -14.29 9.32 -34.44 -0.32 -14.61 16 15 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 18 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 22 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.18 3.67 5.84 -52.48 -0.31 3.36 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.07 8.10 -51.92 -0.42 0.64 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.33 6.72 8.38 -39.29 -0.33 6.39 16 33 H 0.03 0.76 5.33 -51.93 -0.28 0.49 16 34 H -0.01 -0.38 8.06 -51.93 -0.42 -0.80 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 286.73 15.07 4.32 4.32 Total: -1.00 -31.75 286.73 -7.35 -39.11 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -5.08 Total: 3.29 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -1.78 Total: -9.95 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: 0.21 Total: -53.21 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.75 -7.35 -39.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564445254.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.899 kcal (2) G-P(sol) polarization free energy of solvation -31.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds