Wall clock time and date at job start Sun Mar 29 2020 22:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35190 * 126.00056 * 2 1 4 4 C 1.34578 * 107.61850 * 180.02562 * 3 2 1 5 5 C 1.40488 * 108.03354 * 359.89992 * 4 3 2 6 6 N 1.30126 * 108.23073 * 0.12679 * 5 4 3 7 7 C 1.50946 * 123.48469 * 180.16056 * 5 4 3 8 8 C 1.53369 * 108.20650 * 16.60621 * 7 5 4 9 9 C 1.53024 * 109.75341 * 309.35690 * 8 7 5 10 10 C 1.50881 * 128.33054 * 179.71370 * 4 3 2 11 11 H 1.08998 * 109.71436 * 77.01970 * 10 4 3 12 12 N 1.46905 * 109.71779 * 316.41642 * 10 4 3 13 13 C 1.46897 * 110.99679 * 84.99669 * 12 10 4 14 14 C 1.50699 * 109.46897 * 180.02562 * 13 12 10 15 15 H 1.08000 * 120.00089 * 0.02562 * 14 13 12 16 16 C 1.37884 * 120.00003 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00209 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99800 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47108 * 90.00432 * 18 16 14 20 20 H 1.48500 * 109.47225 * 210.00161 * 18 16 14 21 21 H 1.48494 * 109.47538 * 330.00104 * 18 16 14 22 22 H 1.09004 * 109.46729 * 270.02121 * 1 2 3 23 23 H 1.08994 * 109.47304 * 30.02027 * 1 2 3 24 24 H 1.09005 * 109.47068 * 150.02614 * 1 2 3 25 25 H 1.08003 * 126.19511 * 0.07765 * 3 2 1 26 26 H 1.09002 * 109.71891 * 136.28787 * 7 5 4 27 27 H 1.09000 * 109.71775 * 256.93437 * 7 5 4 28 28 H 1.09003 * 109.42547 * 69.43674 * 8 7 5 29 29 H 1.09001 * 109.42986 * 189.26209 * 8 7 5 30 30 H 1.09009 * 109.42142 * 311.64187 * 9 8 7 31 31 H 1.08993 * 109.43071 * 191.80037 * 9 8 7 32 32 H 1.00895 * 111.00074 * 208.95071 * 12 10 4 33 33 H 1.08997 * 109.47794 * 299.99804 * 13 12 10 34 34 H 1.09002 * 109.47417 * 60.00327 * 13 12 10 35 35 H 0.97000 * 120.00052 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2597 1.0937 0.0000 4 6 3.5368 0.6693 -0.0006 5 6 3.5282 -0.7355 0.0014 6 7 2.2899 -1.1351 0.0003 7 6 4.7821 -1.5760 0.0049 8 6 5.9567 -0.6825 0.4223 9 6 5.9634 0.5920 -0.4247 10 6 4.7980 1.4974 -0.0067 11 1 4.9808 1.8963 0.9910 12 7 4.6607 2.6025 -0.9648 13 6 3.9863 3.7528 -0.3484 14 6 3.8632 4.8637 -1.3592 15 1 4.2472 4.7286 -2.3596 16 6 3.2603 6.0527 -1.0069 17 7 2.7932 6.2174 0.2113 18 14 3.1085 7.4300 -2.2597 19 1 1.8287 7.2874 -2.9994 20 1 3.1328 8.7399 -1.5606 21 1 4.2431 7.3577 -3.2150 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8897 -0.5141 24 1 -0.3633 -0.8903 -0.5134 25 1 1.9294 2.1220 0.0012 26 1 4.6733 -2.3958 0.7150 27 1 4.9603 -1.9748 -0.9937 28 1 5.8547 -0.4176 1.4747 29 1 6.8926 -1.2212 0.2741 30 1 5.8584 0.3283 -1.4772 31 1 6.9048 1.1209 -0.2764 32 1 5.5583 2.8686 -1.3410 33 1 2.9926 3.4550 -0.0138 34 1 4.5681 4.1006 0.5052 35 1 2.3694 7.0540 0.4593 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564445254.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:50 Heat of formation + Delta-G solvation = 47.088281 kcal Electronic energy + Delta-G solvation = -16643.075933 eV Core-core repulsion = 14062.238195 eV Total energy + Delta-G solvation = -2580.837738 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.34576 -38.31692 -36.16236 -34.46188 -33.24935 -31.45749 -29.66837 -28.15044 -27.14427 -24.22322 -23.00209 -22.59088 -21.52664 -19.68463 -18.45334 -17.55426 -16.68836 -16.61756 -15.96135 -15.70993 -15.24767 -15.19324 -14.77575 -14.22213 -13.89590 -13.73968 -13.52390 -13.20895 -13.19586 -12.79103 -12.72320 -12.41905 -12.16656 -12.04384 -11.75984 -11.51394 -11.37195 -10.99551 -10.63558 -10.12079 -9.24549 -9.01627 -8.20839 -6.31009 0.97630 1.41537 1.42279 1.53805 1.67460 1.85665 2.40786 3.12203 3.49142 3.68752 3.90552 4.00599 4.19059 4.24299 4.39691 4.40424 4.56550 4.60443 4.62365 4.74833 4.79629 4.99377 5.05302 5.15490 5.21443 5.24318 5.36347 5.48542 5.49294 5.65857 5.82234 6.07342 6.16025 6.52559 6.77456 6.81969 6.96086 7.39731 8.90141 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.026369 B = 0.007001 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.590904 B = 3998.534703 C = 4799.124909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.393 5.393 3 C 0.058 3.942 4 C -0.232 4.232 5 C 0.072 3.928 6 N -0.321 5.321 7 C -0.032 4.032 8 C -0.104 4.104 9 C -0.111 4.111 10 C 0.159 3.841 11 H 0.022 0.978 12 N -0.682 5.682 13 C 0.209 3.791 14 C -0.533 4.533 15 H 0.062 0.938 16 C 0.004 3.996 17 N -0.932 5.932 18 Si 0.968 3.032 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.264 1.264 22 H 0.084 0.916 23 H 0.095 0.905 24 H 0.100 0.900 25 H 0.161 0.839 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.337 0.663 33 H 0.012 0.988 34 H -0.045 1.045 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.952 -13.596 0.076 13.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.176 5.176 3 C -0.086 4.086 4 C -0.243 4.243 5 C -0.096 4.096 6 N -0.143 5.143 7 C -0.071 4.071 8 C -0.142 4.142 9 C -0.149 4.149 10 C 0.048 3.952 11 H 0.039 0.961 12 N -0.313 5.313 13 C 0.081 3.919 14 C -0.571 4.571 15 H 0.080 0.920 16 C -0.194 4.194 17 N -0.573 5.573 18 Si 0.793 3.207 19 H -0.200 1.200 20 H -0.208 1.208 21 H -0.189 1.189 22 H 0.102 0.898 23 H 0.113 0.887 24 H 0.118 0.882 25 H 0.178 0.822 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.078 0.922 29 H 0.124 0.876 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.155 0.845 33 H 0.030 0.970 34 H -0.027 1.027 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.306 -14.703 -0.096 14.706 hybrid contribution 0.469 2.360 0.294 2.424 sum 0.776 -12.343 0.198 12.369 Atomic orbital electron populations 1.22073 0.72483 1.05376 1.04260 1.48771 1.07494 1.02744 1.58632 1.22338 0.91931 0.93150 1.01224 1.20200 0.94670 0.93968 1.15506 1.22868 0.94221 0.93591 0.98923 1.76795 1.01775 1.09034 1.26690 1.20264 0.86995 0.96164 1.03695 1.21516 0.98471 0.94809 0.99414 1.21702 0.96173 0.96122 1.00921 1.19898 0.91781 0.90501 0.93042 0.96062 1.60555 1.26097 1.08671 1.35934 1.19319 0.93004 0.87327 0.92229 1.21562 1.38158 0.98902 0.98521 0.91992 1.25877 0.95025 1.01155 0.97349 1.70082 1.40356 1.26777 1.20049 0.85399 0.78820 0.77786 0.78691 1.20009 1.20761 1.18868 0.89775 0.88663 0.88189 0.82188 0.88688 0.88700 0.92161 0.87581 0.91070 0.90519 0.84540 0.97008 1.02692 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.36 11.47 127.77 1.47 3.83 16 2 N -0.39 -13.67 4.02 -369.96 -1.49 -15.16 16 3 C 0.06 2.33 10.74 83.34 0.89 3.22 16 4 C -0.23 -8.92 5.58 -20.10 -0.11 -9.03 16 5 C 0.07 2.43 7.10 43.44 0.31 2.74 16 6 N -0.32 -11.40 12.56 -47.14 -0.59 -11.99 16 7 C -0.03 -0.76 6.31 30.05 0.19 -0.57 16 8 C -0.10 -2.22 5.86 30.73 0.18 -2.04 16 9 C -0.11 -3.04 5.16 30.73 0.16 -2.88 16 10 C 0.16 5.95 2.85 44.35 0.13 6.08 16 11 H 0.02 0.88 7.82 -2.39 -0.02 0.86 16 12 N -0.68 -29.90 6.23 -498.50 -3.11 -33.01 16 13 C 0.21 11.14 5.16 85.56 0.44 11.59 16 14 C -0.53 -30.30 9.32 25.60 0.24 -30.06 16 15 H 0.06 3.45 7.81 -2.91 -0.02 3.42 16 16 C 0.00 0.24 5.46 84.66 0.46 0.70 16 17 N -0.93 -55.75 13.29 21.45 0.28 -55.46 16 18 Si 0.97 44.11 29.54 68.60 2.03 46.14 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 22 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 23 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.10 2.03 8.14 -2.38 -0.02 2.02 16 25 H 0.16 6.99 5.84 -2.91 -0.02 6.98 16 26 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.06 1.36 8.10 -2.39 -0.02 1.35 16 29 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 1.97 8.10 -2.38 -0.02 1.95 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.34 13.81 8.38 -89.70 -0.75 13.06 16 33 H 0.01 0.68 5.33 -2.39 -0.01 0.67 16 34 H -0.04 -2.59 8.06 -2.39 -0.02 -2.61 16 35 H 0.26 14.85 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -69.12 286.73 1.81 -67.31 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.33 Total: 18.60 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: 4.35 Total: -16.42 kcal Atomic # 7 Polarization: -110.73 SS G_CDS: -4.90 Total: -115.63 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -69.12 1.81 -67.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564445254.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.395 kcal (2) G-P(sol) polarization free energy of solvation -69.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds