Wall clock time and date at job start Sun Mar 29 2020 22:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46645 * 2 1 4 4 H 1.09004 * 109.46997 * 54.51600 * 3 2 1 5 5 C 1.50702 * 109.46577 * 174.51040 * 3 2 1 6 6 H 1.08007 * 119.99382 * 119.99891 * 5 3 2 7 7 C 1.37872 * 120.00539 * 299.72662 * 5 3 2 8 8 N 1.31516 * 120.00251 * 180.27324 * 7 5 3 9 9 Si 1.86806 * 119.99751 * 0.27636 * 7 5 3 10 10 H 1.48502 * 109.47138 * 89.99910 * 9 7 5 11 11 H 1.48503 * 109.46848 * 209.99887 * 9 7 5 12 12 H 1.48499 * 109.47197 * 329.99971 * 9 7 5 13 13 N 1.46895 * 109.47138 * 294.51309 * 3 2 1 14 14 C 1.46900 * 110.99530 * 154.51105 * 13 3 2 15 15 C 1.50711 * 109.47018 * 174.73651 * 14 13 3 16 16 C 1.38339 * 120.45116 * 260.00432 * 15 14 13 17 17 C 1.38840 * 118.50599 * 179.97438 * 16 15 14 18 18 C 1.38063 * 119.32683 * 0.02562 * 17 16 15 19 19 N 1.31946 * 120.85500 * 0.02562 * 18 17 16 20 20 C 1.32426 * 121.62415 * 359.68721 * 19 18 17 21 21 N 1.39004 * 119.71131 * 180.28551 * 20 19 18 22 22 H 1.08994 * 109.47259 * 305.92284 * 1 2 3 23 23 H 1.08998 * 109.47212 * 65.92529 * 1 2 3 24 24 H 1.09006 * 109.46773 * 185.92794 * 1 2 3 25 25 H 1.08999 * 109.46963 * 239.99974 * 2 1 3 26 26 H 1.08993 * 109.47136 * 119.99978 * 2 1 3 27 27 H 0.96995 * 119.99863 * 179.97438 * 8 7 5 28 28 H 1.00897 * 110.99870 * 30.55741 * 13 3 2 29 29 H 1.09000 * 109.47199 * 294.73604 * 14 13 3 30 30 H 1.09005 * 109.47333 * 54.74179 * 14 13 3 31 31 H 1.08000 * 120.74584 * 359.94532 * 16 15 14 32 32 H 1.07995 * 120.33750 * 180.02562 * 17 16 15 33 33 H 1.07994 * 119.57336 * 180.02562 * 18 17 16 34 34 H 0.96995 * 120.00361 * 180.28722 * 21 20 19 35 35 H 0.97007 * 119.99133 * 0.29964 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5986 1.9839 0.8368 5 6 3.5408 1.4447 0.1359 6 1 4.1523 1.8871 -0.6367 7 6 4.1331 0.8870 1.2491 8 7 5.4427 0.8937 1.3702 9 14 3.0754 0.1218 2.5852 10 1 2.8621 -1.3167 2.2846 11 1 3.7595 0.2573 3.8963 12 1 1.7640 0.8164 2.6370 13 7 1.6614 2.0957 -1.2601 14 6 1.5698 3.5521 -1.0913 15 6 1.3076 4.1973 -2.4278 16 6 2.3412 4.7775 -3.1411 17 6 2.0543 5.3600 -4.3683 18 6 0.7559 5.3439 -4.8374 19 7 -0.2105 4.7839 -4.1349 20 6 0.0238 4.2134 -2.9630 21 7 -1.0232 3.6299 -2.2591 22 1 -0.3633 0.6029 0.8322 23 1 -0.3633 0.4192 -0.9382 24 1 -0.3633 -1.0222 0.1061 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 5.8593 0.5017 2.1535 28 1 0.7967 1.7180 -1.6176 29 1 0.7543 3.7881 -0.4077 30 1 2.5071 3.9302 -0.6830 31 1 3.3487 4.7778 -2.7518 32 1 2.8387 5.8209 -4.9501 33 1 0.5283 5.7954 -5.7916 34 1 -0.8571 3.2145 -1.3985 35 1 -1.9201 3.6381 -2.6288 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569503140.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:16 Heat of formation + Delta-G solvation = 38.453613 kcal Electronic energy + Delta-G solvation = -16603.022259 eV Core-core repulsion = 14021.810094 eV Total energy + Delta-G solvation = -2581.212165 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.05121 -36.80607 -34.62221 -33.35809 -32.03605 -30.92217 -29.08213 -27.29125 -24.86902 -22.77690 -22.50623 -21.24697 -19.90217 -17.45609 -17.22642 -16.72797 -15.55877 -15.14740 -14.76958 -14.27991 -14.19028 -13.96032 -13.62247 -12.96785 -12.68239 -12.53424 -12.34791 -11.92955 -11.63658 -11.43715 -10.95512 -10.70610 -10.56547 -10.33754 -10.03760 -9.51712 -9.40033 -9.20270 -9.17311 -8.55399 -7.62790 -7.42082 -6.06521 -4.03761 1.51083 1.73468 3.23030 3.32473 3.35564 3.66503 4.14002 4.37722 4.83684 5.10949 5.13899 5.22636 5.38005 5.38230 5.64642 5.66596 5.75708 5.80466 5.89626 6.00221 6.30104 6.36621 6.41607 6.54188 6.62929 6.73149 6.74725 6.86224 7.11792 7.37816 7.58606 7.67605 7.89787 8.18978 8.40905 8.71842 9.05786 9.56214 11.06820 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.033221 B = 0.006943 C = 0.006006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.646978 B = 4031.946109 C = 4660.708557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.136 4.136 3 C 0.189 3.811 4 H 0.001 0.999 5 C -0.497 4.497 6 H 0.081 0.919 7 C 0.067 3.933 8 N -0.900 5.900 9 Si 0.882 3.118 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.268 1.268 13 N -0.669 5.669 14 C 0.112 3.888 15 C -0.180 4.180 16 C -0.018 4.018 17 C -0.234 4.234 18 C 0.133 3.867 19 N -0.551 5.551 20 C 0.404 3.596 21 N -0.855 5.855 22 H 0.046 0.954 23 H 0.048 0.952 24 H 0.046 0.954 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.263 0.737 28 H 0.317 0.683 29 H 0.021 0.979 30 H 0.091 0.909 31 H 0.135 0.865 32 H 0.127 0.873 33 H 0.149 0.851 34 H 0.406 0.594 35 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.056 5.854 -6.718 14.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.174 4.174 3 C 0.080 3.920 4 H 0.019 0.981 5 C -0.535 4.535 6 H 0.100 0.900 7 C -0.135 4.135 8 N -0.539 5.539 9 Si 0.713 3.287 10 H -0.206 1.206 11 H -0.225 1.225 12 H -0.194 1.194 13 N -0.300 5.300 14 C -0.018 4.018 15 C -0.187 4.187 16 C -0.045 4.045 17 C -0.256 4.256 18 C -0.024 4.024 19 N -0.269 5.269 20 C 0.166 3.834 21 N -0.399 5.399 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.135 0.865 29 H 0.038 0.962 30 H 0.109 0.891 31 H 0.153 0.847 32 H 0.145 0.855 33 H 0.166 0.834 34 H 0.236 0.764 35 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -11.061 5.832 -7.155 14.407 hybrid contribution -0.670 -0.670 1.794 2.028 sum -11.731 5.162 -5.361 13.893 Atomic orbital electron populations 1.21932 0.98282 1.00777 1.00563 1.22127 0.92891 1.00439 1.01939 1.19661 0.97094 0.89268 0.85930 0.98141 1.21022 0.89024 1.37675 1.05777 0.90047 1.24963 0.94763 0.95976 0.97755 1.69881 1.08843 1.45869 1.29277 0.86950 0.80691 0.79803 0.81305 1.20593 1.22473 1.19354 1.60523 1.36303 1.01581 1.31598 1.20630 1.01145 0.89467 0.90520 1.20295 0.92339 1.05774 1.00342 1.21325 0.98882 0.91560 0.92707 1.21793 0.98148 1.07089 0.98614 1.22244 0.88483 0.93989 0.97650 1.67109 1.36917 1.15731 1.07145 1.18194 0.86954 0.89704 0.88526 1.42253 1.08992 1.64872 1.23832 0.93523 0.93267 0.93460 0.91263 0.92697 0.92704 0.86505 0.96162 0.89089 0.84677 0.85455 0.83352 0.76355 0.77174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 9.64 37.16 0.36 -2.22 16 2 C -0.14 -2.84 5.01 -26.73 -0.13 -2.97 16 3 C 0.19 4.27 1.61 -68.86 -0.11 4.16 16 4 H 0.00 0.03 6.90 -51.93 -0.36 -0.33 16 5 C -0.50 -13.69 9.14 -34.44 -0.31 -14.00 16 6 H 0.08 2.49 8.06 -52.48 -0.42 2.07 16 7 C 0.07 1.89 5.45 -17.82 -0.10 1.80 16 8 N -0.90 -27.28 13.96 55.43 0.77 -26.50 16 9 Si 0.88 21.50 24.41 -169.99 -4.15 17.35 16 10 H -0.28 -6.65 6.83 56.52 0.39 -6.26 16 11 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.27 -6.22 6.52 56.52 0.37 -5.85 16 13 N -0.67 -13.18 6.26 -109.21 -0.68 -13.86 16 14 C 0.11 2.00 4.92 -4.97 -0.02 1.97 16 15 C -0.18 -2.93 5.47 -104.26 -0.57 -3.50 16 16 C -0.02 -0.28 9.81 -39.32 -0.39 -0.67 16 17 C -0.23 -3.06 10.10 -39.42 -0.40 -3.46 16 18 C 0.13 1.76 11.17 -17.57 -0.20 1.56 16 19 N -0.55 -8.34 10.39 -12.44 -0.13 -8.47 16 20 C 0.40 6.17 7.73 -155.01 -1.20 4.97 16 21 N -0.85 -10.65 8.91 31.12 0.28 -10.37 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.71 6.65 -51.93 -0.35 0.36 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 26 H 0.05 1.23 3.24 -51.93 -0.17 1.06 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.32 5.60 6.02 -39.29 -0.24 5.36 16 29 H 0.02 0.34 7.12 -51.93 -0.37 -0.03 16 30 H 0.09 1.79 7.82 -51.93 -0.41 1.38 16 31 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 32 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.41 4.86 6.53 -40.82 -0.27 4.60 16 35 H 0.40 4.21 8.95 -40.82 -0.37 3.84 16 LS Contribution 282.68 15.07 4.26 4.26 Total: -1.00 -30.97 282.68 -7.38 -38.36 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -4.66 Total: 11.60 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -3.07 Total: -12.36 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: 0.24 Total: -59.20 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.15 Total: 17.35 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.97 -7.38 -38.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569503140.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.812 kcal (2) G-P(sol) polarization free energy of solvation -30.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds