Wall clock time and date at job start Sun Mar 29 2020 22:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46645 * 2 1 4 4 H 1.09004 * 109.46997 * 54.51600 * 3 2 1 5 5 C 1.50702 * 109.46577 * 174.51040 * 3 2 1 6 6 H 1.08007 * 119.99382 * 119.99891 * 5 3 2 7 7 C 1.37872 * 120.00539 * 299.72662 * 5 3 2 8 8 N 1.31516 * 120.00251 * 180.27324 * 7 5 3 9 9 Si 1.86806 * 119.99751 * 0.27636 * 7 5 3 10 10 H 1.48502 * 109.47138 * 89.99910 * 9 7 5 11 11 H 1.48503 * 109.46848 * 209.99887 * 9 7 5 12 12 H 1.48499 * 109.47197 * 329.99971 * 9 7 5 13 13 N 1.46895 * 109.47138 * 294.51309 * 3 2 1 14 14 C 1.46900 * 110.99530 * 154.51105 * 13 3 2 15 15 C 1.50711 * 109.47018 * 174.73651 * 14 13 3 16 16 C 1.38339 * 120.45116 * 260.00432 * 15 14 13 17 17 C 1.38840 * 118.50599 * 179.97438 * 16 15 14 18 18 C 1.38063 * 119.32683 * 0.02562 * 17 16 15 19 19 N 1.31946 * 120.85500 * 0.02562 * 18 17 16 20 20 C 1.32426 * 121.62415 * 359.68721 * 19 18 17 21 21 N 1.39004 * 119.71131 * 180.28551 * 20 19 18 22 22 H 1.08994 * 109.47259 * 305.92284 * 1 2 3 23 23 H 1.08998 * 109.47212 * 65.92529 * 1 2 3 24 24 H 1.09006 * 109.46773 * 185.92794 * 1 2 3 25 25 H 1.08999 * 109.46963 * 239.99974 * 2 1 3 26 26 H 1.08993 * 109.47136 * 119.99978 * 2 1 3 27 27 H 0.96995 * 119.99863 * 179.97438 * 8 7 5 28 28 H 1.00897 * 110.99870 * 30.55741 * 13 3 2 29 29 H 1.09000 * 109.47199 * 294.73604 * 14 13 3 30 30 H 1.09005 * 109.47333 * 54.74179 * 14 13 3 31 31 H 1.08000 * 120.74584 * 359.94532 * 16 15 14 32 32 H 1.07995 * 120.33750 * 180.02562 * 17 16 15 33 33 H 1.07994 * 119.57336 * 180.02562 * 18 17 16 34 34 H 0.96995 * 120.00361 * 180.28722 * 21 20 19 35 35 H 0.97007 * 119.99133 * 0.29964 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5986 1.9839 0.8368 5 6 3.5408 1.4447 0.1359 6 1 4.1523 1.8871 -0.6367 7 6 4.1331 0.8870 1.2491 8 7 5.4427 0.8937 1.3702 9 14 3.0754 0.1218 2.5852 10 1 2.8621 -1.3167 2.2846 11 1 3.7595 0.2573 3.8963 12 1 1.7640 0.8164 2.6370 13 7 1.6614 2.0957 -1.2601 14 6 1.5698 3.5521 -1.0913 15 6 1.3076 4.1973 -2.4278 16 6 2.3412 4.7775 -3.1411 17 6 2.0543 5.3600 -4.3683 18 6 0.7559 5.3439 -4.8374 19 7 -0.2105 4.7839 -4.1349 20 6 0.0238 4.2134 -2.9630 21 7 -1.0232 3.6299 -2.2591 22 1 -0.3633 0.6029 0.8322 23 1 -0.3633 0.4192 -0.9382 24 1 -0.3633 -1.0222 0.1061 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 5.8593 0.5017 2.1535 28 1 0.7967 1.7180 -1.6176 29 1 0.7543 3.7881 -0.4077 30 1 2.5071 3.9302 -0.6830 31 1 3.3487 4.7778 -2.7518 32 1 2.8387 5.8209 -4.9501 33 1 0.5283 5.7954 -5.7916 34 1 -0.8571 3.2145 -1.3985 35 1 -1.9201 3.6381 -2.6288 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569503140.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:16 Heat of formation + Delta-G solvation = 15.135337 kcal Electronic energy + Delta-G solvation = -16604.033416 eV Core-core repulsion = 14021.810094 eV Total energy + Delta-G solvation = -2582.223322 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.18415 -38.42878 -35.76822 -34.79012 -33.99632 -32.23293 -30.25805 -29.05463 -26.33183 -24.25252 -23.83041 -22.49038 -21.69395 -18.91510 -18.41166 -18.29447 -17.09554 -16.74405 -15.97778 -15.78142 -15.59372 -15.23654 -14.88916 -14.77894 -14.06735 -13.89784 -13.76416 -13.56100 -13.13995 -12.91210 -12.51860 -12.34976 -12.15120 -11.73645 -11.68156 -11.30462 -11.22151 -10.70495 -10.50407 -10.34005 -9.06991 -8.67446 -8.26193 -6.28154 0.37660 0.60996 1.29731 1.34466 1.44742 2.32252 2.64709 2.99296 3.07269 3.59821 3.81265 3.99142 4.11446 4.24622 4.27555 4.33209 4.40374 4.52419 4.66737 4.80618 4.86224 4.93038 5.06305 5.09519 5.19888 5.26378 5.42523 5.57185 5.71797 5.79047 6.05161 6.33345 6.47142 6.62895 6.78546 6.91515 7.34901 7.36476 8.91109 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.033221 B = 0.006943 C = 0.006006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.646978 B = 4031.946109 C = 4660.708557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.137 4.137 3 C 0.195 3.805 4 H 0.001 0.999 5 C -0.500 4.500 6 H 0.032 0.968 7 C 0.006 3.994 8 N -0.952 5.952 9 Si 0.949 3.051 10 H -0.267 1.267 11 H -0.301 1.301 12 H -0.244 1.244 13 N -0.676 5.676 14 C 0.120 3.880 15 C -0.204 4.204 16 C -0.035 4.035 17 C -0.231 4.231 18 C 0.136 3.864 19 N -0.564 5.564 20 C 0.398 3.602 21 N -0.844 5.844 22 H 0.055 0.945 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.041 0.959 27 H 0.264 0.736 28 H 0.333 0.667 29 H 0.037 0.963 30 H 0.059 0.941 31 H 0.126 0.874 32 H 0.155 0.845 33 H 0.186 0.814 34 H 0.408 0.592 35 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.003 5.787 -7.275 16.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C 0.086 3.914 4 H 0.018 0.982 5 C -0.539 4.539 6 H 0.050 0.950 7 C -0.190 4.190 8 N -0.593 5.593 9 Si 0.776 3.224 10 H -0.193 1.193 11 H -0.229 1.229 12 H -0.168 1.168 13 N -0.309 5.309 14 C -0.009 4.009 15 C -0.212 4.212 16 C -0.061 4.061 17 C -0.254 4.254 18 C -0.021 4.021 19 N -0.282 5.282 20 C 0.160 3.840 21 N -0.389 5.389 22 H 0.074 0.926 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.153 0.847 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.144 0.856 32 H 0.173 0.827 33 H 0.203 0.797 34 H 0.240 0.760 35 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -14.061 5.766 -7.731 17.051 hybrid contribution 0.319 -0.546 1.814 1.921 sum -13.742 5.219 -5.917 15.846 Atomic orbital electron populations 1.21865 0.94196 1.02675 1.02061 1.22018 0.96532 0.98134 1.00808 1.19440 0.93677 0.91120 0.87191 0.98196 1.21306 0.91747 1.36448 1.04352 0.95001 1.25835 0.95935 0.96725 1.00497 1.70054 1.11102 1.47769 1.30384 0.85857 0.79637 0.79515 0.77416 1.19311 1.22934 1.16780 1.60327 1.37547 1.02761 1.30300 1.20468 1.00089 0.88249 0.92101 1.20169 0.93461 1.07496 1.00028 1.21481 0.98528 0.92230 0.93903 1.22070 0.99209 1.06381 0.97723 1.22908 0.88048 0.92649 0.98494 1.67234 1.37579 1.16273 1.07133 1.18286 0.87008 0.89831 0.88836 1.42194 1.08971 1.64095 1.23640 0.92637 0.91352 0.91276 0.92237 0.94104 0.92729 0.84747 0.94519 0.92243 0.85555 0.82697 0.79717 0.76048 0.75922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.32 9.64 71.98 0.69 -3.63 16 2 C -0.14 -5.45 5.01 30.60 0.15 -5.30 16 3 C 0.19 8.74 1.61 44.17 0.07 8.81 16 4 H 0.00 0.03 6.90 -2.38 -0.02 0.01 16 5 C -0.50 -28.57 9.14 25.60 0.23 -28.34 16 6 H 0.03 2.08 8.06 -2.91 -0.02 2.05 16 7 C 0.01 0.38 5.45 84.65 0.46 0.84 16 8 N -0.95 -60.05 13.96 21.45 0.30 -59.75 16 9 Si 0.95 44.41 24.41 68.60 1.67 46.09 16 10 H -0.27 -11.91 6.83 99.48 0.68 -11.23 16 11 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 12 H -0.24 -10.36 6.52 99.48 0.65 -9.71 16 13 N -0.68 -26.47 6.26 -499.44 -3.12 -29.59 16 14 C 0.12 4.31 4.92 85.56 0.42 4.74 16 15 C -0.20 -6.56 5.47 -19.63 -0.11 -6.67 16 16 C -0.03 -1.07 9.81 22.44 0.22 -0.85 16 17 C -0.23 -5.64 10.10 22.37 0.23 -5.42 16 18 C 0.14 3.20 11.17 84.63 0.95 4.14 16 19 N -0.56 -15.71 10.39 -193.26 -2.01 -17.72 16 20 C 0.40 11.50 7.73 133.05 1.03 12.53 16 21 N -0.84 -19.05 8.91 -55.44 -0.49 -19.54 16 22 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.07 1.69 6.65 -2.39 -0.02 1.67 16 24 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 25 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.04 1.74 3.24 -2.39 -0.01 1.73 16 27 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 28 H 0.33 11.17 6.02 -89.70 -0.54 10.63 16 29 H 0.04 1.18 7.12 -2.39 -0.02 1.16 16 30 H 0.06 2.47 7.82 -2.38 -0.02 2.45 16 31 H 0.13 3.94 8.06 -2.91 -0.02 3.91 16 32 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 33 H 0.19 2.89 8.06 -2.91 -0.02 2.87 16 34 H 0.41 8.75 6.53 -92.71 -0.61 8.15 16 35 H 0.41 7.53 8.95 -92.70 -0.83 6.70 16 Total: -1.00 -69.26 282.68 -0.24 -69.50 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: -0.94 Total: 30.15 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: 4.35 Total: -19.14 kcal Atomic # 7 Polarization: -121.27 SS G_CDS: -5.33 Total: -126.60 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.67 Total: 46.09 kcal Total: -69.26 -0.24 -69.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569503140.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.636 kcal (2) G-P(sol) polarization free energy of solvation -69.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds