Wall clock time and date at job start Sun Mar 29 2020 22:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36888 * 126.39555 * 2 1 4 4 C 1.34668 * 106.81684 * 180.02562 * 3 2 1 5 5 N 1.34131 * 108.01841 * 359.77890 * 4 3 2 6 6 C 1.30499 * 109.25964 * 0.37219 * 5 4 3 7 7 C 1.50696 * 125.64914 * 179.89665 * 6 5 4 8 8 H 1.09011 * 110.27033 * 181.77884 * 7 6 5 9 9 C 1.54594 * 110.30989 * 303.96899 * 7 6 5 10 10 C 1.54933 * 102.91997 * 140.87684 * 9 7 6 11 11 N 1.48813 * 103.35205 * 322.69117 * 10 9 7 12 12 C 1.46897 * 111.18681 * 159.50572 * 11 10 9 13 13 C 1.50694 * 109.47194 * 52.66331 * 12 11 10 14 14 H 1.08004 * 120.00091 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00250 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99717 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00009 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47289 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47015 * 120.00334 * 17 15 13 20 20 H 1.48501 * 109.47167 * 239.99667 * 17 15 13 21 21 C 1.47905 * 105.67450 * 38.97719 * 11 10 9 22 22 H 1.09006 * 109.46453 * 269.97059 * 1 2 3 23 23 H 1.08999 * 109.47336 * 29.97026 * 1 2 3 24 24 H 1.08999 * 109.47302 * 149.97806 * 1 2 3 25 25 H 1.07995 * 126.59104 * 359.97438 * 3 2 1 26 26 H 1.07998 * 125.99217 * 180.02562 * 4 3 2 27 27 H 1.08999 * 110.72754 * 259.23584 * 9 7 6 28 28 H 1.08999 * 110.72080 * 22.51964 * 9 7 6 29 29 H 1.08998 * 110.66828 * 81.02294 * 10 9 7 30 30 H 1.09004 * 110.66649 * 204.15215 * 10 9 7 31 31 H 1.09000 * 109.47143 * 172.66998 * 12 11 10 32 32 H 1.09011 * 109.46966 * 292.66611 * 12 11 10 33 33 H 0.96997 * 119.99826 * 179.97438 * 16 15 13 34 34 H 1.09002 * 109.91668 * 215.45268 * 21 11 10 35 35 H 1.09002 * 109.91761 * 94.35443 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1019 0.0000 4 6 3.5461 0.6506 -0.0006 5 7 3.5095 -0.6902 0.0040 6 6 2.2663 -1.0870 -0.0006 7 6 1.8019 -2.5206 0.0000 8 1 0.7133 -2.5650 -0.0363 9 6 2.4124 -3.2829 -1.1984 10 6 2.7425 -4.6709 -0.5942 11 7 3.2039 -4.3454 0.7827 12 6 3.1044 -5.5148 1.6662 13 6 3.8130 -6.6844 1.0331 14 1 4.2892 -6.5706 0.0704 15 6 3.8534 -7.8999 1.6828 16 7 3.2740 -8.0383 2.8553 17 14 4.7323 -9.3495 0.8982 18 1 5.2977 -8.9360 -0.4111 19 1 5.8290 -9.8050 1.7900 20 1 3.7685 -10.4602 0.6922 21 6 2.3252 -3.2515 1.2504 22 1 -0.3632 -0.0005 1.0278 23 1 -0.3634 0.8902 -0.5134 24 1 -0.3634 -0.8898 -0.5142 25 1 1.9613 2.1346 -0.0004 26 1 4.4369 1.2612 -0.0003 27 1 1.6866 -3.3766 -2.0062 28 1 3.3189 -2.7891 -1.5483 29 1 1.8513 -5.2976 -0.5604 30 1 3.5356 -5.1585 -1.1611 31 1 3.5676 -5.2855 2.6259 32 1 2.0548 -5.7658 1.8200 33 1 3.3021 -8.8935 3.3121 34 1 2.8924 -2.5606 1.8742 35 1 1.4897 -3.6627 1.8169 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569713095.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:42 Heat of formation + Delta-G solvation = 69.582816 kcal Electronic energy + Delta-G solvation = -16492.190141 eV Core-core repulsion = 13912.327839 eV Total energy + Delta-G solvation = -2579.862302 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.99868 -38.00877 -33.96504 -33.28871 -31.53055 -29.24683 -27.84742 -27.01451 -26.01911 -22.69974 -21.68836 -21.00361 -19.98483 -18.95950 -17.15887 -16.24459 -15.65026 -15.23734 -14.88500 -14.26986 -13.93453 -13.47270 -13.26820 -13.09018 -12.84587 -12.65217 -12.34051 -11.88505 -11.39512 -11.12222 -11.01221 -10.71917 -10.58849 -10.33060 -10.30249 -9.80922 -9.66989 -9.49385 -9.04039 -8.42297 -8.20154 -7.18791 -5.99695 -4.00574 2.11803 2.81089 3.33213 3.33975 3.41316 3.46685 4.46300 4.53588 4.58284 4.77488 4.91374 5.02337 5.16824 5.22145 5.34901 5.38717 5.43285 5.61838 5.80457 5.93710 6.04649 6.23298 6.32983 6.38002 6.54862 6.75623 6.77323 6.89427 7.25949 7.28562 7.42897 7.81601 8.06114 8.27310 8.32908 8.58038 9.07805 9.63882 11.11929 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.051872 B = 0.005140 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.665643 B = 5445.682030 C = 5515.393261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.465 5.465 3 C -0.073 4.073 4 C -0.028 4.028 5 N -0.473 5.473 6 C 0.229 3.771 7 C -0.016 4.016 8 H 0.079 0.921 9 C -0.113 4.113 10 C 0.055 3.945 11 N -0.509 5.509 12 C 0.183 3.817 13 C -0.510 4.510 14 H 0.065 0.935 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.053 3.947 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.170 0.830 26 H 0.167 0.833 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.039 0.961 30 H 0.081 0.919 31 H 0.032 0.968 32 H -0.008 1.008 33 H 0.260 0.740 34 H 0.072 0.928 35 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.724 16.158 -6.710 19.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.149 5.149 3 C -0.206 4.206 4 C -0.177 4.177 5 N -0.191 5.191 6 C -0.034 4.034 7 C -0.037 4.037 8 H 0.097 0.903 9 C -0.152 4.152 10 C -0.073 4.073 11 N -0.233 5.233 12 C 0.057 3.943 13 C -0.548 4.548 14 H 0.083 0.917 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.725 3.275 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.212 1.212 21 C -0.076 4.076 22 H 0.094 0.906 23 H 0.102 0.898 24 H 0.105 0.895 25 H 0.187 0.813 26 H 0.184 0.816 27 H 0.081 0.919 28 H 0.101 0.899 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.050 0.950 32 H 0.009 0.991 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.674 15.685 -6.540 18.257 hybrid contribution -1.225 -0.361 -0.126 1.284 sum -7.899 15.324 -6.666 18.484 Atomic orbital electron populations 1.22012 0.77209 1.04391 1.03551 1.45391 1.07348 1.06797 1.55326 1.22589 0.91589 0.92245 1.14139 1.22341 0.96202 0.91531 1.07589 1.70331 1.18340 1.11220 1.19159 1.23266 0.85668 0.90297 1.04138 1.20525 0.98837 0.85613 0.98747 0.90279 1.22621 1.00762 0.96654 0.95151 1.23006 0.99065 0.93762 0.91475 1.64924 1.47355 1.08781 1.02263 1.19921 0.95376 0.86318 0.92639 1.21265 1.34132 0.94181 1.05245 0.91699 1.24994 0.95724 0.98926 0.94933 1.69975 1.44510 1.24914 1.14443 0.86450 0.79360 0.82212 0.79474 1.19604 1.20991 1.21174 1.22791 0.95475 0.94956 0.94420 0.90586 0.89843 0.89488 0.81306 0.81591 0.91948 0.89933 0.94227 0.90109 0.94954 0.99061 0.93028 0.90949 0.94387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 10.85 59.85 0.65 1.20 16 2 N -0.47 -5.76 3.15 -121.28 -0.38 -6.14 16 3 C -0.07 -0.86 11.58 -16.56 -0.19 -1.05 16 4 C -0.03 -0.40 11.87 -17.81 -0.21 -0.61 16 5 N -0.47 -8.39 10.99 -10.82 -0.12 -8.51 16 6 C 0.23 3.60 6.19 -155.42 -0.96 2.64 16 7 C -0.02 -0.26 3.35 -90.42 -0.30 -0.56 16 8 H 0.08 1.03 6.78 -51.92 -0.35 0.68 16 9 C -0.11 -1.85 6.60 -24.87 -0.16 -2.02 16 10 C 0.05 1.11 5.56 -1.74 -0.01 1.10 16 11 N -0.51 -11.72 5.40 -231.64 -1.25 -12.97 16 12 C 0.18 4.95 4.79 -4.98 -0.02 4.93 16 13 C -0.51 -14.62 8.57 -34.44 -0.30 -14.92 16 14 H 0.06 1.83 6.54 -52.48 -0.34 1.49 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 17 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 C 0.05 1.04 6.34 -2.75 -0.02 1.02 16 22 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.09 0.61 7.04 -51.93 -0.37 0.25 16 25 H 0.17 1.33 8.06 -52.49 -0.42 0.90 16 26 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.08 1.46 7.65 -51.93 -0.40 1.07 16 29 H 0.04 0.81 8.02 -51.93 -0.42 0.39 16 30 H 0.08 1.69 7.17 -51.93 -0.37 1.32 16 31 H 0.03 0.95 8.14 -51.93 -0.42 0.52 16 32 H -0.01 -0.24 7.81 -51.92 -0.41 -0.64 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.07 1.48 7.67 -51.93 -0.40 1.08 16 35 H 0.04 0.73 7.57 -51.93 -0.39 0.34 16 LS Contribution 288.09 15.07 4.34 4.34 Total: -1.00 -33.67 288.09 -8.44 -42.11 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -5.12 Total: -2.59 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -1.63 Total: -6.77 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -1.01 Total: -54.02 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -33.67 -8.44 -42.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569713095.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.692 kcal (2) G-P(sol) polarization free energy of solvation -33.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds