Wall clock time and date at job start Sun Mar 29 2020 22:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36888 * 126.39555 * 2 1 4 4 C 1.34668 * 106.81684 * 180.02562 * 3 2 1 5 5 N 1.34131 * 108.01841 * 359.77890 * 4 3 2 6 6 C 1.30499 * 109.25964 * 0.37219 * 5 4 3 7 7 C 1.50696 * 125.64914 * 179.89665 * 6 5 4 8 8 H 1.09011 * 110.27033 * 181.77884 * 7 6 5 9 9 C 1.54594 * 110.30989 * 303.96899 * 7 6 5 10 10 C 1.54933 * 102.91997 * 140.87684 * 9 7 6 11 11 N 1.48813 * 103.35205 * 322.69117 * 10 9 7 12 12 C 1.46897 * 111.18681 * 159.50572 * 11 10 9 13 13 C 1.50694 * 109.47194 * 52.66331 * 12 11 10 14 14 H 1.08004 * 120.00091 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00250 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99717 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00009 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47289 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47015 * 120.00334 * 17 15 13 20 20 H 1.48501 * 109.47167 * 239.99667 * 17 15 13 21 21 C 1.47905 * 105.67450 * 38.97719 * 11 10 9 22 22 H 1.09006 * 109.46453 * 269.97059 * 1 2 3 23 23 H 1.08999 * 109.47336 * 29.97026 * 1 2 3 24 24 H 1.08999 * 109.47302 * 149.97806 * 1 2 3 25 25 H 1.07995 * 126.59104 * 359.97438 * 3 2 1 26 26 H 1.07998 * 125.99217 * 180.02562 * 4 3 2 27 27 H 1.08999 * 110.72754 * 259.23584 * 9 7 6 28 28 H 1.08999 * 110.72080 * 22.51964 * 9 7 6 29 29 H 1.08998 * 110.66828 * 81.02294 * 10 9 7 30 30 H 1.09004 * 110.66649 * 204.15215 * 10 9 7 31 31 H 1.09000 * 109.47143 * 172.66998 * 12 11 10 32 32 H 1.09011 * 109.46966 * 292.66611 * 12 11 10 33 33 H 0.96997 * 119.99826 * 179.97438 * 16 15 13 34 34 H 1.09002 * 109.91668 * 215.45268 * 21 11 10 35 35 H 1.09002 * 109.91761 * 94.35443 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1019 0.0000 4 6 3.5461 0.6506 -0.0006 5 7 3.5095 -0.6902 0.0040 6 6 2.2663 -1.0870 -0.0006 7 6 1.8019 -2.5206 0.0000 8 1 0.7133 -2.5650 -0.0363 9 6 2.4124 -3.2829 -1.1984 10 6 2.7425 -4.6709 -0.5942 11 7 3.2039 -4.3454 0.7827 12 6 3.1044 -5.5148 1.6662 13 6 3.8130 -6.6844 1.0331 14 1 4.2892 -6.5706 0.0704 15 6 3.8534 -7.8999 1.6828 16 7 3.2740 -8.0383 2.8553 17 14 4.7323 -9.3495 0.8982 18 1 5.2977 -8.9360 -0.4111 19 1 5.8290 -9.8050 1.7900 20 1 3.7685 -10.4602 0.6922 21 6 2.3252 -3.2515 1.2504 22 1 -0.3632 -0.0005 1.0278 23 1 -0.3634 0.8902 -0.5134 24 1 -0.3634 -0.8898 -0.5142 25 1 1.9613 2.1346 -0.0004 26 1 4.4369 1.2612 -0.0003 27 1 1.6866 -3.3766 -2.0062 28 1 3.3189 -2.7891 -1.5483 29 1 1.8513 -5.2976 -0.5604 30 1 3.5356 -5.1585 -1.1611 31 1 3.5676 -5.2855 2.6259 32 1 2.0548 -5.7658 1.8200 33 1 3.3021 -8.8935 3.3121 34 1 2.8924 -2.5606 1.8742 35 1 1.4897 -3.6627 1.8169 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569713095.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:42 Heat of formation + Delta-G solvation = 46.017053 kcal Electronic energy + Delta-G solvation = -16493.212029 eV Core-core repulsion = 13912.327839 eV Total energy + Delta-G solvation = -2580.884190 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.01118 -39.61670 -35.29869 -34.86381 -33.29547 -30.64983 -29.35475 -28.10864 -27.51845 -24.65588 -22.96248 -22.05607 -21.74419 -20.13654 -18.45967 -18.08230 -17.02547 -16.57394 -16.17831 -16.01599 -15.20768 -15.05029 -14.55552 -14.29076 -14.10773 -13.82313 -13.56386 -13.43223 -13.06740 -12.95343 -12.59149 -12.47946 -12.40188 -12.01728 -11.90329 -11.61158 -11.18370 -10.76697 -10.64651 -10.47368 -9.23015 -9.04800 -8.22302 -6.32340 1.13876 1.40623 1.42162 1.55887 1.96144 2.24092 2.40693 3.11224 3.34199 3.44119 3.81215 3.82536 3.98686 4.07286 4.26102 4.44485 4.45306 4.53919 4.66850 4.69577 4.72803 4.86556 4.91578 4.93806 5.06819 5.16337 5.26194 5.37718 5.44138 5.63553 5.92380 5.97288 6.27933 6.32269 6.55989 6.84535 7.29654 7.37963 8.90338 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.051872 B = 0.005140 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.665643 B = 5445.682030 C = 5515.393261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.460 5.460 3 C -0.046 4.046 4 C -0.065 4.065 5 N -0.524 5.524 6 C 0.202 3.798 7 C -0.004 4.004 8 H 0.114 0.886 9 C -0.098 4.098 10 C 0.054 3.946 11 N -0.529 5.529 12 C 0.200 3.800 13 C -0.529 4.529 14 H 0.065 0.935 15 C 0.002 3.998 16 N -0.935 5.935 17 Si 0.972 3.028 18 H -0.263 1.263 19 H -0.279 1.279 20 H -0.275 1.275 21 C 0.055 3.945 22 H 0.086 0.914 23 H 0.114 0.886 24 H 0.096 0.904 25 H 0.214 0.786 26 H 0.180 0.820 27 H 0.100 0.900 28 H 0.067 0.933 29 H 0.036 0.964 30 H 0.067 0.933 31 H -0.004 1.004 32 H -0.029 1.029 33 H 0.265 0.735 34 H 0.054 0.946 35 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.065 17.328 -8.323 21.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.142 5.142 3 C -0.180 4.180 4 C -0.213 4.213 5 N -0.243 5.243 6 C -0.060 4.060 7 C -0.025 4.025 8 H 0.132 0.868 9 C -0.136 4.136 10 C -0.073 4.073 11 N -0.253 5.253 12 C 0.073 3.927 13 C -0.567 4.567 14 H 0.083 0.917 15 C -0.196 4.196 16 N -0.575 5.575 17 Si 0.796 3.204 18 H -0.187 1.187 19 H -0.205 1.205 20 H -0.200 1.200 21 C -0.075 4.075 22 H 0.104 0.896 23 H 0.132 0.868 24 H 0.114 0.886 25 H 0.230 0.770 26 H 0.197 0.803 27 H 0.119 0.881 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.014 0.986 32 H -0.012 1.012 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.044 16.871 -8.164 20.396 hybrid contribution -0.825 -0.606 0.420 1.107 sum -8.869 16.266 -7.744 20.080 Atomic orbital electron populations 1.22401 0.74298 1.06459 1.04881 1.45620 1.09080 1.05873 1.53638 1.23229 0.90568 0.93713 1.10471 1.22752 0.98274 0.90696 1.09538 1.70208 1.20245 1.13458 1.20346 1.22952 0.85928 0.90795 1.06344 1.20383 1.00554 0.85642 0.95874 0.86815 1.22501 1.01253 0.93680 0.96214 1.23002 0.98310 0.96193 0.89842 1.64757 1.49441 1.07963 1.03163 1.19545 0.93422 0.87757 0.91933 1.21547 1.34549 0.95127 1.05442 0.91719 1.25944 0.96287 1.01991 0.95351 1.70100 1.45572 1.25971 1.15859 0.85297 0.78162 0.78262 0.78684 1.18702 1.20486 1.20009 1.22731 0.94612 0.93765 0.96355 0.89586 0.86793 0.88573 0.76981 0.80326 0.88138 0.91437 0.94543 0.91481 0.98579 1.01185 0.92618 0.92724 0.94503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.69 10.85 127.77 1.39 2.07 16 2 N -0.46 -9.99 3.15 -537.61 -1.69 -11.68 16 3 C -0.05 -0.94 11.58 83.09 0.96 0.02 16 4 C -0.06 -1.77 11.87 83.52 0.99 -0.78 16 5 N -0.52 -18.53 10.99 -188.14 -2.07 -20.59 16 6 C 0.20 6.11 6.19 138.13 0.85 6.96 16 7 C 0.00 -0.12 3.35 -10.66 -0.04 -0.15 16 8 H 0.11 2.63 6.78 -2.38 -0.02 2.62 16 9 C -0.10 -3.09 6.60 31.80 0.21 -2.88 16 10 C 0.05 2.21 5.56 86.59 0.48 2.69 16 11 N -0.53 -25.27 5.40 -886.79 -4.78 -30.06 16 12 C 0.20 11.36 4.79 85.56 0.41 11.77 16 13 C -0.53 -31.16 8.57 25.60 0.22 -30.94 16 14 H 0.06 3.73 6.54 -2.91 -0.02 3.72 16 15 C 0.00 0.13 5.46 84.66 0.46 0.60 16 16 N -0.93 -57.64 13.29 21.45 0.28 -57.35 16 17 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 18 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 21 C 0.05 2.18 6.34 86.44 0.55 2.73 16 22 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 23 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.10 0.94 7.04 -2.39 -0.02 0.92 16 25 H 0.21 2.26 8.06 -2.91 -0.02 2.24 16 26 H 0.18 4.01 8.06 -2.91 -0.02 3.99 16 27 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.07 2.36 7.65 -2.39 -0.02 2.34 16 29 H 0.04 1.49 8.02 -2.39 -0.02 1.47 16 30 H 0.07 2.86 7.17 -2.38 -0.02 2.85 16 31 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 32 H -0.03 -1.75 7.81 -2.38 -0.02 -1.77 16 33 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 34 H 0.05 2.34 7.67 -2.39 -0.02 2.32 16 35 H 0.04 1.45 7.57 -2.39 -0.02 1.44 16 Total: -1.00 -76.09 288.09 1.32 -74.78 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 1.06 Total: 5.49 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 6.49 Total: -7.90 kcal Atomic # 7 Polarization: -111.43 SS G_CDS: -8.26 Total: -119.69 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -76.09 1.32 -74.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569713095.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.792 kcal (2) G-P(sol) polarization free energy of solvation -76.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds