Wall clock time and date at job start Sun Mar 29 2020 22:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47381 * 2 1 4 4 C 1.53000 * 109.47297 * 120.00159 * 2 1 3 5 5 C 1.50700 * 109.47368 * 196.27466 * 4 2 1 6 6 H 1.08004 * 120.00068 * 5.35887 * 5 4 2 7 7 C 1.37876 * 120.00321 * 185.36384 * 5 4 2 8 8 N 1.31516 * 119.99721 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00205 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47297 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47383 * 119.99717 * 9 7 5 12 12 H 1.48501 * 109.47016 * 239.99768 * 9 7 5 13 13 N 1.46905 * 109.46976 * 239.99950 * 2 1 3 14 14 C 1.46854 * 110.99967 * 47.44708 * 13 2 1 15 15 C 1.53529 * 109.83459 * 51.48076 * 14 13 2 16 16 C 1.50822 * 107.75092 * 49.94188 * 15 14 13 17 17 N 1.29847 * 129.20720 * 163.83811 * 16 15 14 18 18 N 1.40389 * 108.08437 * 180.23592 * 17 16 15 19 19 H 0.97001 * 125.99121 * 179.97438 * 18 17 16 20 20 C 1.35270 * 108.00921 * 359.95009 * 18 17 16 21 21 C 1.34357 * 107.60813 * 359.96648 * 20 18 17 22 22 C 1.47324 * 110.99819 * 172.31999 * 13 2 1 23 23 H 1.09001 * 109.47302 * 300.00248 * 1 2 3 24 24 H 1.09001 * 109.47307 * 59.99656 * 1 2 3 25 25 H 1.08999 * 109.47381 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47057 * 316.27221 * 4 2 1 27 27 H 1.08997 * 109.47198 * 76.26969 * 4 2 1 28 28 H 0.96997 * 119.99576 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.39788 * 171.57184 * 14 13 2 30 30 H 1.09002 * 109.39328 * 291.39295 * 14 13 2 31 31 H 1.08997 * 109.82399 * 169.41009 * 15 14 13 32 32 H 1.09001 * 109.82379 * 290.33799 * 15 14 13 33 33 H 1.07998 * 126.19310 * 179.97438 * 20 18 17 34 34 H 1.09003 * 109.75141 * 47.13511 * 22 13 2 35 35 H 1.09005 * 109.74949 * 167.81759 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.4933 -0.3860 1.4648 6 1 3.9793 0.3417 0.8316 7 6 4.2026 -1.0081 2.4701 8 7 3.6107 -1.8938 3.2414 9 14 6.0038 -0.5919 2.7377 10 1 6.4291 0.4275 1.7452 11 1 6.1893 -0.0550 4.1099 12 1 6.8252 -1.8177 2.5706 13 7 2.0196 -0.6925 -1.1995 14 6 1.3208 -0.2205 -2.4018 15 6 1.3724 1.3126 -2.4661 16 6 2.8063 1.7334 -2.2627 17 7 3.3697 2.8763 -2.5127 18 7 4.7251 2.7804 -2.1598 19 1 5.3863 3.4856 -2.2402 20 6 4.9471 1.5325 -1.6875 21 6 3.7818 0.8655 -1.7381 22 6 3.4806 -0.5551 -1.3290 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.4609 -0.4012 2.1154 27 1 1.9311 -1.7977 1.1171 28 1 4.1097 -2.3312 3.9489 29 1 1.8021 -0.6364 -3.2870 30 1 0.2813 -0.5467 -2.3678 31 1 1.0238 1.6536 -3.4410 32 1 0.7475 1.7368 -1.6802 33 1 5.8901 1.1428 -1.3338 34 1 3.9572 -0.7719 -0.3729 35 1 3.8495 -1.2440 -2.0889 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578073727.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:30 Heat of formation + Delta-G solvation = 83.795143 kcal Electronic energy + Delta-G solvation = -17487.389608 eV Core-core repulsion = 14908.143599 eV Total energy + Delta-G solvation = -2579.246009 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.17180 -38.04000 -33.54554 -31.99469 -31.56374 -30.01288 -28.53915 -27.16017 -24.08785 -23.65936 -22.02348 -20.57829 -19.67647 -17.86206 -17.10042 -16.48543 -15.30783 -14.95364 -14.50183 -14.18071 -13.80167 -13.59621 -12.85668 -12.43139 -12.12449 -11.97037 -11.66037 -11.52316 -11.31543 -11.12347 -10.92257 -10.77562 -10.58454 -10.45369 -10.07141 -9.92521 -9.07263 -8.96331 -8.89888 -8.35205 -7.88083 -7.45429 -5.99100 -3.96150 2.28270 3.16541 3.20266 3.28063 3.35822 3.37080 4.43922 4.73031 4.92644 5.18697 5.33713 5.46537 5.54639 5.81114 5.93628 5.99258 6.03496 6.09562 6.18961 6.29695 6.33425 6.39578 6.50350 6.66529 6.90046 7.02220 7.11929 7.31979 7.61937 7.65334 7.75002 7.95387 8.04330 8.08269 8.25124 8.48304 9.07696 9.61432 11.11918 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.022597 B = 0.011120 C = 0.008177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.784285 B = 2517.384230 C = 3423.261545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.084 3.916 3 H 0.034 0.966 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.065 0.935 7 C 0.059 3.941 8 N -0.889 5.889 9 Si 0.882 3.118 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.284 1.284 13 N -0.515 5.515 14 C 0.055 3.945 15 C -0.077 4.077 16 C 0.081 3.919 17 N -0.299 5.299 18 N -0.495 5.495 19 H 0.433 0.567 20 C 0.057 3.943 21 C -0.240 4.240 22 C 0.094 3.906 23 H 0.051 0.949 24 H 0.044 0.956 25 H 0.057 0.943 26 H 0.015 0.985 27 H 0.033 0.967 28 H 0.259 0.741 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.172 0.828 34 H 0.149 0.851 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.526 4.779 -10.225 11.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 H 0.052 0.948 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.083 0.917 7 C -0.143 4.143 8 N -0.528 5.528 9 Si 0.711 3.289 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.210 1.210 13 N -0.236 5.236 14 C -0.075 4.075 15 C -0.117 4.117 16 C -0.089 4.089 17 N -0.121 5.121 18 N -0.204 5.204 19 H 0.276 0.724 20 C -0.087 4.087 21 C -0.253 4.253 22 C -0.034 4.034 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.033 0.967 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.189 0.811 34 H 0.166 0.834 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.778 5.292 -10.431 11.722 hybrid contribution 1.876 0.824 0.434 2.094 sum 1.098 6.115 -9.997 11.770 Atomic orbital electron populations 1.22066 0.96844 1.01608 1.00277 1.21802 0.92538 0.96275 0.91751 0.94790 1.19174 0.95230 0.96723 0.89819 1.21378 0.96124 1.22856 1.14754 0.91679 1.25012 0.97872 0.95332 0.96075 1.69973 1.36157 1.27079 1.19575 0.86692 0.86013 0.78153 0.78077 1.19856 1.21218 1.20977 1.62274 1.04165 1.55800 1.01404 1.22257 1.00087 0.90541 0.94570 1.20872 0.89216 0.99186 1.02462 1.22195 0.97261 0.91238 0.98179 1.76752 0.89210 1.21947 1.24183 1.46278 1.08424 1.11848 1.53882 0.72447 1.21961 1.00461 0.85929 1.00383 1.21122 0.92473 1.01453 1.10269 1.21684 0.88767 0.87650 1.05265 0.92975 0.93689 0.92371 0.96715 0.94860 0.93121 0.91503 0.90243 0.90648 0.89522 0.81052 0.83414 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 8.19 37.15 0.30 -2.31 16 2 C 0.08 1.73 1.57 -67.71 -0.11 1.63 16 3 H 0.03 0.77 5.93 -51.93 -0.31 0.46 16 4 C 0.03 0.70 4.56 -27.88 -0.13 0.57 16 5 C -0.51 -13.57 6.49 -34.44 -0.22 -13.79 16 6 H 0.07 1.69 5.71 -52.48 -0.30 1.39 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 9 Si 0.88 20.68 29.54 -169.99 -5.02 15.66 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.51 -9.82 4.79 -227.31 -1.09 -10.91 16 14 C 0.05 0.85 5.26 -3.57 -0.02 0.83 16 15 C -0.08 -1.19 5.51 -27.55 -0.15 -1.34 16 16 C 0.08 1.46 6.43 -82.44 -0.53 0.93 16 17 N -0.30 -5.36 12.67 33.72 0.43 -4.93 16 18 N -0.50 -7.61 7.38 30.33 0.22 -7.39 16 19 H 0.43 4.97 8.96 -182.38 -1.63 3.34 16 20 C 0.06 0.94 11.96 -17.41 -0.21 0.73 16 21 C -0.24 -4.44 4.69 -104.98 -0.49 -4.93 16 22 C 0.09 1.83 5.65 -4.66 -0.03 1.81 16 23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.04 0.67 5.04 -51.93 -0.26 0.40 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.01 0.39 8.04 -51.93 -0.42 -0.02 16 27 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.07 0.98 8.06 -51.93 -0.42 0.56 16 30 H 0.08 1.11 6.77 -51.93 -0.35 0.76 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.09 1.37 5.75 -51.93 -0.30 1.07 16 33 H 0.17 2.39 8.06 -52.49 -0.42 1.97 16 34 H 0.15 3.32 3.94 -51.93 -0.20 3.12 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 270.04 15.07 4.07 4.07 Total: -1.00 -30.47 270.04 -8.20 -38.67 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -5.87 Total: 4.31 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: -1.68 Total: -14.36 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 0.30 Total: -48.34 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.47 -8.20 -38.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578073727.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.461 kcal (2) G-P(sol) polarization free energy of solvation -30.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds