Wall clock time and date at job start Sun Mar 29 2020 22:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47381 * 2 1 4 4 C 1.53000 * 109.47297 * 120.00159 * 2 1 3 5 5 C 1.50700 * 109.47368 * 196.27466 * 4 2 1 6 6 H 1.08004 * 120.00068 * 5.35887 * 5 4 2 7 7 C 1.37876 * 120.00321 * 185.36384 * 5 4 2 8 8 N 1.31516 * 119.99721 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00205 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47297 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47383 * 119.99717 * 9 7 5 12 12 H 1.48501 * 109.47016 * 239.99768 * 9 7 5 13 13 N 1.46905 * 109.46976 * 239.99950 * 2 1 3 14 14 C 1.46854 * 110.99967 * 47.44708 * 13 2 1 15 15 C 1.53529 * 109.83459 * 51.48076 * 14 13 2 16 16 C 1.50822 * 107.75092 * 49.94188 * 15 14 13 17 17 N 1.29847 * 129.20720 * 163.83811 * 16 15 14 18 18 N 1.40389 * 108.08437 * 180.23592 * 17 16 15 19 19 H 0.97001 * 125.99121 * 179.97438 * 18 17 16 20 20 C 1.35270 * 108.00921 * 359.95009 * 18 17 16 21 21 C 1.34357 * 107.60813 * 359.96648 * 20 18 17 22 22 C 1.47324 * 110.99819 * 172.31999 * 13 2 1 23 23 H 1.09001 * 109.47302 * 300.00248 * 1 2 3 24 24 H 1.09001 * 109.47307 * 59.99656 * 1 2 3 25 25 H 1.08999 * 109.47381 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47057 * 316.27221 * 4 2 1 27 27 H 1.08997 * 109.47198 * 76.26969 * 4 2 1 28 28 H 0.96997 * 119.99576 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.39788 * 171.57184 * 14 13 2 30 30 H 1.09002 * 109.39328 * 291.39295 * 14 13 2 31 31 H 1.08997 * 109.82399 * 169.41009 * 15 14 13 32 32 H 1.09001 * 109.82379 * 290.33799 * 15 14 13 33 33 H 1.07998 * 126.19310 * 179.97438 * 20 18 17 34 34 H 1.09003 * 109.75141 * 47.13511 * 22 13 2 35 35 H 1.09005 * 109.74949 * 167.81759 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.4933 -0.3860 1.4648 6 1 3.9793 0.3417 0.8316 7 6 4.2026 -1.0081 2.4701 8 7 3.6107 -1.8938 3.2414 9 14 6.0038 -0.5919 2.7377 10 1 6.4291 0.4275 1.7452 11 1 6.1893 -0.0550 4.1099 12 1 6.8252 -1.8177 2.5706 13 7 2.0196 -0.6925 -1.1995 14 6 1.3208 -0.2205 -2.4018 15 6 1.3724 1.3126 -2.4661 16 6 2.8063 1.7334 -2.2627 17 7 3.3697 2.8763 -2.5127 18 7 4.7251 2.7804 -2.1598 19 1 5.3863 3.4856 -2.2402 20 6 4.9471 1.5325 -1.6875 21 6 3.7818 0.8655 -1.7381 22 6 3.4806 -0.5551 -1.3290 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.4609 -0.4012 2.1154 27 1 1.9311 -1.7977 1.1171 28 1 4.1097 -2.3312 3.9489 29 1 1.8021 -0.6364 -3.2870 30 1 0.2813 -0.5467 -2.3678 31 1 1.0238 1.6536 -3.4410 32 1 0.7475 1.7368 -1.6802 33 1 5.8901 1.1428 -1.3338 34 1 3.9572 -0.7719 -0.3729 35 1 3.8495 -1.2440 -2.0889 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578073727.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:29 Heat of formation + Delta-G solvation = 62.342554 kcal Electronic energy + Delta-G solvation = -17488.319862 eV Core-core repulsion = 14908.143599 eV Total energy + Delta-G solvation = -2580.176263 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.48813 -39.49929 -35.36817 -33.65258 -32.98760 -31.48180 -29.89340 -28.94565 -25.50663 -25.32388 -23.69836 -21.89373 -21.16990 -19.24708 -18.57283 -18.37422 -16.80422 -16.54688 -16.13142 -15.66189 -15.15582 -15.05771 -14.25872 -14.14119 -13.68020 -13.37105 -13.21851 -13.02742 -12.96919 -12.80792 -12.56306 -12.37533 -12.20237 -12.08226 -11.67686 -11.36864 -10.90688 -10.79984 -10.44990 -10.29598 -9.24522 -8.94258 -8.08457 -6.11049 0.99020 1.42282 1.43472 1.54160 1.82996 2.02771 2.46856 3.21896 3.32032 3.65348 3.96526 4.23247 4.31739 4.45692 4.50578 4.64807 4.70712 4.72964 4.87938 4.93431 4.98003 5.07049 5.15176 5.17876 5.39794 5.42346 5.55846 5.67323 5.69756 5.81319 5.97572 6.34154 6.49246 6.53446 6.66720 6.76822 6.99656 7.49942 9.03654 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.022597 B = 0.011120 C = 0.008177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.784285 B = 2517.384230 C = 3423.261545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.099 3.901 3 H 0.017 0.983 4 C 0.034 3.966 5 C -0.511 4.511 6 H 0.071 0.929 7 C 0.001 3.999 8 N -0.933 5.933 9 Si 0.948 3.052 10 H -0.253 1.253 11 H -0.290 1.290 12 H -0.280 1.280 13 N -0.527 5.527 14 C 0.058 3.942 15 C -0.074 4.074 16 C 0.069 3.931 17 N -0.318 5.318 18 N -0.482 5.482 19 H 0.449 0.551 20 C 0.063 3.937 21 C -0.270 4.270 22 C 0.100 3.900 23 H 0.049 0.951 24 H 0.076 0.924 25 H 0.057 0.943 26 H -0.014 1.014 27 H 0.002 0.998 28 H 0.259 0.741 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.196 0.804 34 H 0.115 0.885 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.016 5.914 -11.911 13.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.009 4.009 3 H 0.035 0.965 4 C -0.004 4.004 5 C -0.549 4.549 6 H 0.089 0.911 7 C -0.196 4.196 8 N -0.574 5.574 9 Si 0.774 3.226 10 H -0.177 1.177 11 H -0.217 1.217 12 H -0.206 1.206 13 N -0.249 5.249 14 C -0.071 4.071 15 C -0.114 4.114 16 C -0.100 4.100 17 N -0.141 5.141 18 N -0.193 5.193 19 H 0.296 0.704 20 C -0.082 4.082 21 C -0.283 4.283 22 C -0.029 4.029 23 H 0.068 0.932 24 H 0.095 0.905 25 H 0.076 0.924 26 H 0.004 0.996 27 H 0.020 0.980 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.213 0.787 34 H 0.132 0.868 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.230 6.463 -12.150 13.764 hybrid contribution 1.716 0.473 0.922 2.005 sum 1.487 6.936 -11.228 13.281 Atomic orbital electron populations 1.22010 0.94310 1.02107 1.01797 1.21460 0.94477 0.94384 0.90610 0.96504 1.19046 0.94908 0.95147 0.91289 1.21666 0.96685 1.22262 1.14240 0.91079 1.25850 1.02448 0.95334 0.95964 1.70117 1.38029 1.28694 1.20530 0.85641 0.80618 0.78380 0.77966 1.17658 1.21674 1.20636 1.62187 1.04377 1.56130 1.02225 1.22352 1.00832 0.90808 0.93103 1.20919 0.88023 0.98778 1.03691 1.22559 0.98285 0.91084 0.98043 1.76701 0.90308 1.22141 1.24974 1.46302 1.08148 1.12081 1.52744 0.70449 1.22344 1.00891 0.85964 0.99037 1.21142 0.93698 1.01267 1.12184 1.21376 0.88897 0.88939 1.03653 0.93157 0.90509 0.92352 0.99573 0.97970 0.93247 0.90344 0.88201 0.88185 0.89815 0.78709 0.86798 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.85 8.19 71.98 0.59 -4.26 16 2 C 0.10 4.06 1.57 44.91 0.07 4.13 16 3 H 0.02 0.76 5.93 -2.39 -0.01 0.74 16 4 C 0.03 1.74 4.56 29.85 0.14 1.88 16 5 C -0.51 -27.44 6.49 25.60 0.17 -27.27 16 6 H 0.07 3.68 5.71 -2.91 -0.02 3.66 16 7 C 0.00 0.07 5.46 84.65 0.46 0.54 16 8 N -0.93 -55.85 13.29 21.45 0.28 -55.57 16 9 Si 0.95 42.57 29.54 68.60 2.03 44.60 16 10 H -0.25 -10.38 7.11 99.48 0.71 -9.67 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 13 N -0.53 -19.59 4.79 -873.08 -4.18 -23.78 16 14 C 0.06 1.64 5.26 86.49 0.45 2.09 16 15 C -0.07 -2.08 5.51 30.06 0.17 -1.91 16 16 C 0.07 2.35 6.43 43.50 0.28 2.63 16 17 N -0.32 -10.71 12.67 -47.22 -0.60 -11.31 16 18 N -0.48 -13.58 7.38 -57.97 -0.43 -14.01 16 19 H 0.45 9.07 8.96 -213.13 -1.91 7.16 16 20 C 0.06 1.94 11.96 83.28 1.00 2.93 16 21 C -0.27 -9.51 4.69 -20.09 -0.09 -9.60 16 22 C 0.10 3.80 5.65 85.53 0.48 4.28 16 23 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.08 2.07 5.04 -2.39 -0.01 2.06 16 25 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 26 H -0.01 -0.79 8.04 -2.39 -0.02 -0.81 16 27 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 28 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 29 H 0.08 2.07 8.06 -2.39 -0.02 2.05 16 30 H 0.10 2.44 6.77 -2.39 -0.02 2.42 16 31 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.08 2.42 5.75 -2.39 -0.01 2.41 16 33 H 0.20 4.86 8.06 -2.91 -0.02 4.83 16 34 H 0.11 5.13 3.94 -2.39 -0.01 5.12 16 35 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 Total: -1.00 -66.40 270.04 0.01 -66.39 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -0.80 Total: 18.25 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: 3.71 Total: -24.58 kcal Atomic # 7 Polarization: -99.74 SS G_CDS: -4.93 Total: -104.66 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -66.40 0.01 -66.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578073727.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.737 kcal (2) G-P(sol) polarization free energy of solvation -66.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds