Wall clock time and date at job start Sun Mar 29 2020 22:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47390 * 2 1 4 4 C 1.36940 * 119.99860 * 265.77491 * 3 2 1 5 5 H 1.07994 * 120.00249 * 146.20982 * 4 3 2 6 6 C 1.38812 * 119.99951 * 326.20473 * 4 3 2 7 7 N 1.31624 * 120.00053 * 337.69181 * 6 4 3 8 8 Si 1.86806 * 120.00075 * 157.69065 * 6 4 3 9 9 H 1.48496 * 109.46898 * 89.99976 * 8 6 4 10 10 H 1.48502 * 109.46863 * 210.00177 * 8 6 4 11 11 H 1.48498 * 109.46813 * 329.99864 * 8 6 4 12 12 C 1.46496 * 120.00273 * 85.77052 * 3 2 1 13 13 C 1.50692 * 109.47145 * 90.00304 * 12 3 2 14 14 C 1.39786 * 125.89953 * 95.00134 * 13 12 3 15 15 C 1.35530 * 107.89861 * 180.02562 * 14 13 12 16 16 N 1.34717 * 107.88379 * 359.87116 * 15 14 13 17 17 N 1.30709 * 125.89580 * 274.97933 * 13 12 3 18 18 C 1.47151 * 111.01023 * 180.22021 * 16 15 14 19 19 C 1.54372 * 105.64072 * 342.82173 * 18 16 15 20 20 C 1.51426 * 141.97551 * 179.73584 * 15 14 13 21 21 H 1.08999 * 109.47486 * 300.00539 * 1 2 3 22 22 H 1.09006 * 109.47026 * 60.00168 * 1 2 3 23 23 H 1.08993 * 109.47137 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47481 * 240.00010 * 2 1 3 25 25 H 1.08998 * 109.47127 * 119.99479 * 2 1 3 26 26 H 0.96997 * 120.00079 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.46865 * 330.00018 * 12 3 2 28 28 H 1.08996 * 109.47260 * 210.00388 * 12 3 2 29 29 H 1.08005 * 126.04675 * 0.04866 * 14 13 12 30 30 H 1.09007 * 110.22149 * 101.88820 * 18 16 15 31 31 H 1.09000 * 110.22745 * 223.74994 * 18 16 15 32 32 H 1.09003 * 110.97045 * 143.88729 * 19 18 16 33 33 H 1.09001 * 110.96654 * 267.64706 * 19 18 16 34 34 H 1.09002 * 110.48323 * 315.32656 * 20 15 14 35 35 H 1.08997 * 110.48875 * 77.96825 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3290 1.9976 -1.1827 5 1 2.1599 3.0577 -1.2999 6 6 2.8614 1.2597 -2.2310 7 7 3.4703 0.1180 -1.9896 8 14 2.7136 1.8870 -3.9844 9 1 3.8911 2.7317 -4.3087 10 1 2.6585 0.7345 -4.9194 11 1 1.4738 2.6932 -4.1188 12 6 2.1744 2.1030 1.2652 13 6 3.5637 1.8782 1.8038 14 6 4.6632 2.7199 1.6121 15 6 5.7245 2.1708 2.2516 16 7 5.3124 1.0257 2.8292 17 7 3.9487 0.8627 2.5311 18 6 6.4156 0.3718 3.5507 19 6 7.7086 1.0160 3.0062 20 6 7.1948 2.3976 2.5343 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 3.8420 -0.3978 -2.7222 27 1 1.4420 1.7372 1.9849 28 1 2.0178 3.1685 1.0973 29 1 4.6662 3.6444 1.0537 30 1 6.3258 0.5541 4.6217 31 1 6.4148 -0.6995 3.3499 32 1 8.4529 1.1239 3.7953 33 1 8.1086 0.4416 2.1707 34 1 7.7141 2.7079 1.6275 35 1 7.3217 3.1411 3.3211 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593008392.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:04 Heat of formation + Delta-G solvation = 107.535517 kcal Electronic energy + Delta-G solvation = -16807.268388 eV Core-core repulsion = 14229.051839 eV Total energy + Delta-G solvation = -2578.216549 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.90398 -36.42182 -35.17416 -31.49226 -30.52753 -29.77805 -28.41713 -26.59627 -25.32781 -23.29941 -21.49316 -20.46543 -19.38677 -18.56941 -16.44974 -16.24625 -15.29616 -14.73723 -14.04648 -13.81184 -13.55999 -13.21261 -13.03757 -12.87694 -12.22252 -12.04348 -12.04009 -11.44172 -11.30413 -11.18441 -10.96633 -10.83941 -10.74222 -10.50864 -9.97566 -9.92233 -9.56958 -9.47673 -8.41473 -8.27142 -7.67868 -6.56868 -5.70493 -3.23950 2.60403 3.01168 3.40136 3.47362 3.50270 3.70578 4.35604 4.56357 4.74294 4.82142 5.11536 5.39636 5.44462 5.56445 5.62922 5.72341 5.82716 5.92599 6.00571 6.20308 6.42588 6.45635 6.63668 6.68500 6.71320 6.84370 6.95689 7.04930 7.39413 7.56403 7.65099 7.84859 7.92535 8.57103 8.70704 9.25855 9.88697 10.45912 11.29755 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.025640 B = 0.007996 C = 0.006930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.789574 B = 3500.957084 C = 4039.536422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.137 3.863 3 N -0.568 5.568 4 C -0.255 4.255 5 H 0.065 0.935 6 C 0.009 3.991 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.287 1.287 10 H -0.290 1.290 11 H -0.277 1.277 12 C 0.216 3.784 13 C 0.088 3.912 14 C -0.233 4.233 15 C 0.038 3.962 16 N -0.407 5.407 17 N -0.279 5.279 18 C 0.135 3.865 19 C -0.132 4.132 20 C -0.061 4.061 21 H 0.033 0.967 22 H 0.048 0.952 23 H 0.034 0.966 24 H 0.097 0.903 25 H 0.024 0.976 26 H 0.252 0.748 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.135 0.865 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.192 2.623 9.295 11.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.011 3.989 3 N -0.287 5.287 4 C -0.385 4.385 5 H 0.083 0.917 6 C -0.191 4.191 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.214 1.214 10 H -0.216 1.216 11 H -0.203 1.203 12 C 0.086 3.914 13 C -0.081 4.081 14 C -0.263 4.263 15 C -0.090 4.090 16 N -0.190 5.190 17 N -0.100 5.100 18 C 0.013 3.987 19 C -0.171 4.171 20 C -0.100 4.100 21 H 0.052 0.948 22 H 0.068 0.932 23 H 0.053 0.947 24 H 0.115 0.885 25 H 0.043 0.957 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.153 0.847 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.872 1.188 9.852 11.531 hybrid contribution 0.495 0.836 -1.417 1.718 sum 6.367 2.025 8.436 10.761 Atomic orbital electron populations 1.22283 1.00742 0.98670 1.00375 1.20966 0.89702 0.86120 1.02067 1.44055 1.72417 1.12104 1.00159 1.19113 1.36077 0.94149 0.89120 0.91722 1.25134 0.96910 0.97894 0.99150 1.70040 1.36251 1.15753 1.30549 0.86403 0.78097 0.77902 0.85017 1.21395 1.21627 1.20263 1.19595 0.86310 0.97118 0.88332 1.23967 0.99872 0.90768 0.93539 1.20482 0.91394 1.04682 1.09749 1.21991 0.95563 0.91439 0.99968 1.50063 1.07742 1.19215 1.41986 1.77347 0.87121 1.23116 1.22441 1.22055 0.82711 0.98258 0.95654 1.22798 0.96085 0.96216 1.01971 1.20786 0.89666 0.97213 1.02310 0.94796 0.93249 0.94743 0.88547 0.95718 0.93767 0.93076 0.91570 0.84705 0.90487 0.89943 0.88823 0.89788 0.89401 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 10.24 37.16 0.38 -3.06 16 2 C 0.14 3.48 5.97 -4.04 -0.02 3.45 16 3 N -0.57 -14.74 2.44 -174.62 -0.43 -15.16 16 4 C -0.25 -7.06 9.49 -15.06 -0.14 -7.20 16 5 H 0.07 1.75 7.92 -52.49 -0.42 1.34 16 6 C 0.01 0.26 4.93 -17.43 -0.09 0.17 16 7 N -0.88 -26.36 11.32 55.49 0.63 -25.73 16 8 Si 0.90 21.88 29.61 -169.99 -5.03 16.85 16 9 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.22 4.91 6.24 -5.20 -0.03 4.88 16 13 C 0.09 2.06 6.79 -82.50 -0.56 1.50 16 14 C -0.23 -5.03 10.74 -39.97 -0.43 -5.46 16 15 C 0.04 0.72 7.49 -81.94 -0.61 0.10 16 16 N -0.41 -8.08 4.85 -55.71 -0.27 -8.35 16 17 N -0.28 -6.58 12.70 33.63 0.43 -6.15 16 18 C 0.14 1.86 7.77 -2.97 -0.02 1.83 16 19 C -0.13 -1.41 7.19 -25.08 -0.18 -1.59 16 20 C -0.06 -0.78 6.86 -26.59 -0.18 -0.97 16 21 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.10 2.74 5.32 -51.93 -0.28 2.47 16 25 H 0.02 0.63 8.10 -51.93 -0.42 0.21 16 26 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.05 1.08 8.07 -51.93 -0.42 0.67 16 28 H 0.07 1.39 8.04 -51.93 -0.42 0.97 16 29 H 0.14 2.73 8.06 -52.48 -0.42 2.30 16 30 H 0.08 0.89 8.14 -51.92 -0.42 0.46 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 293.06 15.07 4.42 4.42 Total: -1.00 -33.54 293.06 -7.46 -41.01 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -5.31 Total: -0.54 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -1.89 Total: -6.34 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.36 Total: -55.39 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.54 -7.46 -41.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593008392.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.541 kcal (2) G-P(sol) polarization free energy of solvation -33.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds